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BMC Bioinformatics ; 19(1): 303, 2018 Aug 22.
Article in English | MEDLINE | ID: mdl-30134911

ABSTRACT

BACKGROUND: Computational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information which is obfuscated by the data structure complexity. RESULTS: bioSyntax ( https://biosyntax.org/ ) is a freely available suite of biological syntax highlighting packages for vim, gedit, Sublime, VSCode, and less. bioSyntax improves the legibility of low-level biological data in the bioinformatics workspace. CONCLUSION: bioSyntax supports computational scientists in parsing and comprehending their data efficiently and thus can accelerate research output.


Subject(s)
Computational Biology , Software , Information Storage and Retrieval , Nucleotides/genetics , Sequence Alignment
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