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1.
Dev Biol ; 426(2): 255-260, 2017 06 15.
Article in English | MEDLINE | ID: mdl-27256582

ABSTRACT

Large insert genomic DNA libraries are useful resources for genomic studies. Although the genome of Xenopus tropicalis stands as the amphibian reference genome because it benefitted from large-scale sequencing studies, physical mapping resources such as BAC libraries are lagging behind. Here we present the construction and characterization of a BAC library that covers the whole X. tropicalis genome. We prepared this BAC library from the genomic DNA of X. tropicalis females of the Adiopodoume strain. We characterized BAC clones by screening for specific loci, by chromosomal localization using FISH and by systematic BAC end sequencing. The median insert size is about 110kbp and the library coverage is around six genome equivalents. We obtained a total of 163,787 BAC end sequences with mate pairs for 77,711 BAC clones. We mapped all BAC end sequences to the reference X. tropicalis genome assembly to enable the identification of BAC clones covering specific loci. Overall, this BAC library resource complements the knowledge of the X. tropicalis genome and should further promote its use as a reference genome for developmental biology studies and amphibian comparative genomics.


Subject(s)
Chromosomes, Artificial, Bacterial/genetics , Gene Library , Genomics/methods , Xenopus Proteins/genetics , Xenopus/genetics , Animals , Chromosome Mapping , Female , In Situ Hybridization, Fluorescence , Liver/chemistry , Sequence Analysis, DNA
2.
Eur J Immunol ; 31(2): 403-11, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11180104

ABSTRACT

We have reported previously the presence of two T cell receptor beta-chain constant region (Cbeta) isotypes in the Mexican axolotl. Specific Dbeta and Jbeta segments were present at the Vbeta-Cbeta1 and Vbeta-Cbeta2 junctions and nine Vbeta families which associate with both isotypes were characterized. This report describes two new Cbeta isotypes, Cbeta3 and Cbeta4. About 70 % of the amino acids in Cbeta3 are identical to Cbeta1 and Cbeta2. A Dbeta3 and a single Jbeta3 were found at the Vbeta-Cbeta3 junctions. The Dbeta3 consensus core sequence (TACGTGGCTACGTGGG) differs to all the presently known Dbeta and the CDR3beta loops of the Vbeta-Cbeta3 junctions (mean: 11.1 amino acids) contain a majority of aromatic, small hydrophobic and basic residues. The CDR3beta loops of the other isotypes are shorter (mean: 8.5 amino acids), contain a majority of acidic residues and very few aromatic residues. The axolotl Cbeta4 sequence has about 46 % similarity to Cbeta1, Cbeta2 and Cbeta3. Dbeta4 is identical to Dbeta2 and six new Jbeta segments are used at the Vbeta-Cbeta4 junctions. Four new families of Vbeta segments (Vbeta10-Vbeta13) are preferentially associated to Cbeta4. A strong selective pressure must operate in most vertebrates to preserve the structural stability of the extracellular part of the Cbeta chain. The four axolotl Cbeta seem to have evolved more freely, perhaps to favor the early emergence of a large diversity of T cell receptors in an amphibian species which is not fully immunocompetent before the 5th month of development.


Subject(s)
Receptors, Antigen, T-Cell, alpha-beta/chemistry , Ambystoma , Amino Acid Sequence , Animals , Molecular Sequence Data , Protein Isoforms/chemistry , Receptors, Antigen, T-Cell, alpha-beta/genetics
3.
Immunogenetics ; 52(1-2): 137-44, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11132150

ABSTRACT

We report here the structure of cDNA clones encoding axolotl light chains of the lambda type. A single IGLC gene and eight different potential IGLV genes belonging to four different families were detected. The axolotl Cgamma domain has several residues or stretches of residues that are typically conserved in mammalian, avian, and Xenopus Cgamma, but the KATLVCL stretch, which is well conserved in the Cgamma and T-cell receptor Cbeta domains of many vertebrate species, is not well conserved. All axolotl Vgamma sequences closely match several human and Xenopus Vgamma-like sequences and, although the axolotl Cgamma and Vgamma sequences are very like their tetrapod homologues, they are not closely related to nontetrapod L chains. Southern blot experiments suggested the presence of a single IGLC gene and of a limited number of IGLV genes, and analysis of IGLV-J junctions clearly indicated that at least three of the IGLJ segments can associate with IGLV1, IGLV2, or IGLV3 subgroup genes. The overall diversity of the axolotl Vgamma CDR3 junctions seems to be of the same order as that of mammalian Vgamma chains. However, a single IGLV4 segment was found among the 45 cDNAs analyzed. This suggests that the axolotl IGL locus may have a canonical tandem structure, like the mammalian IGK or IGH loci. Immunofluorescence, immunoblotting, and microsequencing experiments strongly suggested that most, if not all L chains are of the gamma type. This may explain in part the poor humoral response of the axolotl.


Subject(s)
Ambystoma mexicanum/genetics , Genetic Variation , Immunoglobulin lambda-Chains/genetics , Ambystoma mexicanum/immunology , Amino Acid Sequence , Animals , Base Sequence , Blotting, Southern/methods , DNA, Complementary , Humans , Molecular Sequence Data , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid
4.
Immunogenetics ; 51(8-9): 681-7, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10941839

ABSTRACT

The developmental expression of the RAG1 gene in the Mexican axolotl hematopoietic organs was studied. RAG1 mRNAs were first detected in trunk extracts from 6-week-old larvae, and in head and trunk extracts of 8- and 9-week-old larvae. RAG1 is expressed in the thymus at all stages of development, until its natural involution after 12 months of age. In contrast, although RAG1 transcripts were present in the spleen and liver of the young larvae, they were not detected in the liver after 4.5 months and in the spleen after 8 months. No RAG1 mRNA expression was observed in the spleens or livers of 24-month-old hyperimmunized axolotls. The developmental expression of the RAG2 protein was also analyzed in axolotl thymus, spleen, and liver extracts using specific anti-RAG2 antibodies. RAG2 was readily detected at 7 months, but not in hematopoietic organs of 12- and 24-month-old axolotls. The presence of RAG1 transcripts was limited to the sub-capsular area of the thymus lobes, as detected by in situ hybridization. Discrete clusters of labeled cells were observed in the spleen sections, and a relatively large number of labeled cells were located in the hepatic peripheral hematopoietic layer of 3-month-old axolotls. The first appearance of RAG1 gene products in the axolotl hematopoietic organs is thus well correlated with the first production of rearranged T-cell and B-cell receptor mRNAs, 40-60 days after fertilization.


Subject(s)
Ambystoma mexicanum/embryology , DNA-Binding Proteins/genetics , Homeodomain Proteins/genetics , Ambystoma mexicanum/genetics , Animals , Gene Expression , Hematopoiesis , In Situ Hybridization/methods , Larva , Liver/metabolism , Mexico , Spleen/metabolism , Thymus Gland/metabolism , Time Factors
5.
Immunogenetics ; 50(5-6): 336-43, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10630298

ABSTRACT

The Ikaros family of transcription factors plays an essential role in hematopoiesis. We report here the structure of cDNA clones encoding two Ikaros isoforms, Ikl and Ik2, in the Mexican axolotl. The Ik1 cDNA sequence is very similar to that of the rainbow trout, chicken, and mammalian Ik1 sequences. However, a 96 base pair region which encodes the first N-terminal zing finger (F1) is lacking from axolotl Ik1, both in clones from a cDNA library and clones isolated from direct polymerase chain reaction products. A region corresponding to exon 3 is completely absent from the axolotl Ik2 sequence and thus the Ik1 and Ik2 isoforms possess the same number of zinc finger motifs. The structure of these five CC-HH motifs is very well conserved in the axolotl, including the structural deviations from its amino acid consensus composition which are identical in all species analyzed to date. The axolotl Ik1 3' untranslated region sequence is very long (2538 bp) and contains two UA-rich motifs known as instability determinants and which could play a role in mRNA translational efficiency. Ikaros transcripts are first detected in the ventral blood island of stage 36 embryos, about 24 h before the first heartbeats (late tailbud stage), and then in the major lymphopoietic organs of the developing larvae. In situ hybridization demonstrates that Ikaros transcripts are abundant at the periphery of the thymus lobes, in the presumptive site of early thymocyte differentiation.


Subject(s)
Ambystoma/genetics , DNA-Binding Proteins , Gene Expression Regulation, Developmental , Transcription Factors/biosynthesis , Transcription Factors/genetics , Ambystoma/embryology , Amino Acid Sequence , Animals , Base Sequence , DNA, Complementary/metabolism , Ikaros Transcription Factor , Lymphoid Tissue/metabolism , Molecular Sequence Data , Protein Isoforms , Sequence Homology, Amino Acid , Spleen/metabolism , Thymus Gland/metabolism , Time Factors , Tissue Distribution
6.
Immunol Rev ; 166: 87-102, 1998 Dec.
Article in English | MEDLINE | ID: mdl-9914905

ABSTRACT

The structure and expression of genes encoding molecules homologous to mammalian T-cell receptors (TCR) have been recently studied in ectothermic vertebrate species representative of chondrychthians, teleosts, and amphibians. The overall TCR chain structure is well conserved in phylogeny: TCR beta- and TCR alpha-like chains were detected in all the species analyzed; TCR gamma- and TCR delta-like chains were also present in a chondrychthian species. The diversity potential of the variable (V) and joining (J) segments is rather large and, as in mammals, conserved diversity (D) segments are associated to the TCR beta and TCR delta chains. An important level of junctional diversity occurred at the V-(D)-J junctions, with the potential addition of N- and P-nucleotides. Thus, the conservation of the structure and of the potential of diversity of TCR molecules have been under a permanent selective pressure during vertebrate evolution. The structure of MHC class I and class II molecules was also well conserved in jawed vertebrates. TCR and MHC molecules are strongly functionally linked and play a determinant role in the initiation and the regulation of the specific immune responses; thus, it is not surprising that their structures have been reciprocally frozen during evolution.


Subject(s)
Receptors, Antigen, T-Cell/genetics , Vertebrates/genetics , Amino Acid Sequence , Animals , Cloning, Molecular/methods , Humans , Immunoglobulin Variable Region/classification , Immunoglobulin Variable Region/genetics , Molecular Sequence Data , Phylogeny , Receptors, Antigen, T-Cell/classification , Vertebrates/immunology
7.
Immunogenetics ; 46(5): 402-9, 1997.
Article in English | MEDLINE | ID: mdl-9271630

ABSTRACT

The immune capacity of young and adult axolotls (Ambystoma mexicanum) was evaluated by examining the combinatorial and junctional diversity of the VH chain. A large number of VDJ rearrangements isolated from 2.5-, 3.5-, 10-, and 24-month-old animals were sequenced. Six JH segments were identified with the canonical structure of all known vertebrate JHs, including the conserved Trp103-Gly104-X-Gly106 motif. Four core DH-like sequences were used by most (80%) of the VDJ junctions. These G-rich sequences had structures reminiscent of the TCRB DB sequences, and were equally used in their three reading frames. About 25% of the Igh, VDJ junctions from 3.5-month-old axolotls were out of frame, but most rearrangements were in frame at 10 and 24 months, suggesting that there is active selection of the productively rearranged Igh chains in the developing animals. There was no significant difference between the size of CDR3 in young (3.5 months) and subadult (10 months) axolotls (mean: 8.5 amino acids). However, the CDR3 loop was 1 amino acid longer in 2-year-old adult animals (mean: 9.5 residues). Several pairs of identical VDJ/CDR3 sequences were shared between 3.5-month-old individually analyzed axolotls, or between groups of axolotl of different ages. These identical rearrangements might be provided by the selection of some B-cell clones important for species survival, although the probability that different 3.5-month-old axolotl larvae would produce identical junctions seems very low, considering their limited number of B cells (less than 10(5)). The high frequency of tyrosine residues and the paucity of charged residues in the axolotl CDR3 loops may explain the polyreactivity of natural antibodies, and also clarify why it is so difficult to raise specific antibodies against soluble antigens.


Subject(s)
Ambystoma/genetics , Gene Rearrangement , Immunoglobulin Heavy Chains/genetics , Immunoglobulin Joining Region/genetics , Immunoglobulin Variable Region/genetics , Ambystoma/growth & development , Ambystoma/immunology , Animals , Genetic Variation , Immunoglobulin mu-Chains/genetics , Immunoglobulins/genetics , Species Specificity
8.
Immunogenetics ; 45(4): 235-41, 1997.
Article in English | MEDLINE | ID: mdl-9002443

ABSTRACT

Polymerase chain reaction was used to isolate cDNA clones encoding putative T-cell receptor (TCR) alpha chains in an amphibian, the Mexican axolotl (Ambystoma mexicanum). Five TCRalpha-V chain-encoding segments were identified, each belonging to a separate family. The best identity scores for these axolotl TCRalpha-V segments were all provided by sequences belonging to the human TCRalpha-V1 family and the mouse TCRalpha-V3 and TCRalpha-V8 families. A total of 14 different TCRA-J segments were identified from 44 TCRA-V/TCRA-J regions sequenced, suggesting that a large repertoire of TCRA-J segments is a characteristic of most vertebrates. The structure of the axolotl CDR3 alpha chain loop is in good agreement with that of mammals, including a majority of small hydrophobic residues at position 92 and of charged, hydrophilic, or polar residues at positions 93 and 94, which are highly variable and correspond to the TCRA-V/J junction. This suggests that some positions of the axolotl CDR3 alpha chain loop are positively selected during T-cell differentiation, particularly around residue 93 that could be selected for its ability to makes contacts with major histocompatibility complex-associated antigenic peptides, as in mammals. The axolotl Calpha domain had the typical structure of mammalian and avian Calpha domains, including the charged residues in the TM segment that are thought to interact with other proteins in the membrane, as well as most of the residues forming the conserved antigen receptor transmembrane motif.


Subject(s)
Genetic Variation , Receptors, Antigen, T-Cell, alpha-beta/chemistry , Receptors, Antigen, T-Cell, alpha-beta/genetics , Ambystoma , Amino Acid Sequence , Animals , Consensus Sequence , Humans , Molecular Sequence Data , Polymerase Chain Reaction , Sequence Alignment
9.
J Immunol ; 157(1): 207-12, 1996 Jul 01.
Article in English | MEDLINE | ID: mdl-8683116

ABSTRACT

T cell receptor beta-chain genes are well characterized in representatives of most vertebrate phyla, from sharks to mammals, but the molecular structure of complete TCR alpha-chains has not yet been established in cold-blooded vertebrates. We used a PCR approach to isolate cDNAs encoding putative teleost fish (Oncorhynchus mykiss, rainbow trout) TCR alpha-chains. Eight V alpha segments were identified, belonging to six different families, and the best amino acid sequence identity scores for these trout V alpha were all provided by mammalian V alpha or V delta sequences. Twenty-four (60.1 %) of the 39 analyzed V alpha segments belong to the V alpha 2 family, which has limited homology with mammalian V alpha/delta sequences and with the human V pre-B sequence. A total of 32 different J alpha segments were identified from 40 J alpha regions sequenced, suggesting that a large repertoire of J alpha segments is a characteristic of most vertebrates. The structural properties of the TCR alpha-chain complementarity-determining region 3 loop are well conserved between trout and mammals, suggesting that this region has been under continuous selective pressure in jawed vertebrate evolution. The trout C alpha segment has conserved N-terminal and transmembrane domains, but the C alpha intercysteine distance contains only 40 residues, significantly smaller as compared with mammals (49-56 residues). The conserved features of teleost fish TCR beta- and alpha-chains with their mammalian equivalents suggest that TCR-alpha beta receptors were still present in the common Devonian ancestors of modern teleost fish and mammals, about 450 million years ago.


Subject(s)
Oncorhynchus mykiss/immunology , Receptors, Antigen, T-Cell, alpha-beta/chemistry , Receptors, Antigen, T-Cell, alpha-beta/genetics , Amino Acid Sequence , Animals , Base Sequence , Lymphoid Tissue/chemistry , Molecular Sequence Data , Multigene Family/immunology , Oncorhynchus mykiss/genetics , Organ Specificity/genetics , Organ Specificity/immunology , RNA, Messenger/isolation & purification , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Structure-Activity Relationship
10.
Immunogenetics ; 44(4): 275-85, 1996.
Article in English | MEDLINE | ID: mdl-8753858

ABSTRACT

We sequenced a total of 189 independent rearrangements in which the VB7.1 element is associated with CB1 (99 clones) or CB2 (90 clones) isotypes of the T-cell receptor (TCR) beta chain in the Mexican axolotl. Three stages of development were analyzed: 2.5 months, 10 months, and 25 months. Three JB1 segments were associated with the VB-CB1 rearrangements and six JB2 segments with VB-CB2. As in other vertebrates, some amino acid positions were conserved in all Jbetas (e. g., Phe-108, Gly-109, Gly-111, Thr-112, and Val-116). Two 11 nucleotides DB-like sequences, differed by one (A or T) central residue and could be productively read in the three putative reading frames. Most of the DB1 and JB1 segments were in the VB-CB1 clones, and most of the DB2 and JB2 segments were in the VB-CB2 clones, suggesting that the TCRB locus is organized into independent DB-JB-CB clusters that used the same collection of VB segments. About 40% of the beta-chain VDJ junctions in 2.5-month-old larvae had N nucleotides, compared with about 73% in 10 - 25-month old animals. The beta-chain VDJ junctions had about 30% of defective rearrangements at all stages of development, which could be due to the slow rate of cell division in the axolotl lymphoid organs, and the large genome in this urodele. Many of the axolotl CDRbeta3 sequences deduced for in frame VDJ rearrangements are the same in animals of different origins. Such redundancy could be a statistical effect due to the small number of thymocytes in the developing axolotl, rather than to some bias due to junctional preferences.


Subject(s)
Receptors, Antigen, T-Cell, alpha-beta/genetics , Aging , Ambystoma mexicanum , Amino Acid Sequence , Animals , Base Sequence , Molecular Sequence Data , Multigene Family , Nucleic Acid Conformation , Protein Structure, Secondary , RNA/analysis , Recombination, Genetic , Spleen , Thymus Gland
11.
Dev Comp Immunol ; 19(5): 417-23, 1995.
Article in English | MEDLINE | ID: mdl-8654668

ABSTRACT

We have identified and analyzed cDNA clones encoding a major 26 kDa protein of the HMG1-2 family which is abundant in the cytoplasm and nucleus of axolotl hydrocortisone-sensitive thymocytes. The axolotl HMG2 protein is very similar to proteins belonging to the HMG1-2 family, from teleost fish to mammals. All the molecular features of the HMG1-2 proteins are conserved, including the high proportion of basic and aromatic residues, and the characteristic acidic C-terminus tail. The 3'-untranslated region of the HMG2 axolotl cDNA is also similar to the avian and mammalian HMG2 3'-UT sequences, suggesting that some selective events have acted at the DNA level to conserve this region, which could be important in the differential expression of the HMG1 and HMG2 genes. The axolotl HMG2 protein contains the two well conserved HMG boxes which are thought to be the DNA-binding domains of the molecule. Axolotl thymocytes and spleen cells contain almost identical amounts of HMG2 mRNAs but HMG2 polypeptide is undetectable in spleen cells using anti-26 kDa antibodies. The reason for the accumulation of HMG1-2 molecules in vertebrate hydrocortisone-sensitive thymocytes is discussed, as well as their possible role in apoptosis.


Subject(s)
Ambystoma mexicanum/metabolism , High Mobility Group Proteins/genetics , T-Lymphocytes/chemistry , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , DNA, Complementary/isolation & purification , Gene Library , High Mobility Group Proteins/chemistry , Molecular Sequence Data , Polymerase Chain Reaction , Sequence Homology
12.
J Immunol ; 155(2): 699-706, 1995 Jul 15.
Article in English | MEDLINE | ID: mdl-7608547

ABSTRACT

Cell-mediated immunity (e.g., allograft rejection) is found in all vertebrates, and these reactions are known to depend on thymus-derived cells in amphibian, avian, and mammalian species. The participation of peripheral T cell-like lymphocytes subpopulations to fish immunity is now well documented, but the developmental origin, migration, and peripheral tissue distribution of these cells remain practically unknown. This is mainly due to the difficulty of efficiently thymectomizing fish at an early stage of development and to the lack of Ab strictly specific for thymocytes and T cell surface Ag. One strategy for analyzing T cell biology in fish would be to characterize the genes encoding polypeptides homologous to the TCR molecules. This report describes cDNA clones from the rainbow trout (Oncorhynchus mykiss) that have sequences very similar to amphibian, avian, and mammalian TCR beta-chains. Three complete trout V beta segments belonging to different families were analyzed; one of them had limited amino acid sequence similarity to the human V beta 20 family. The 10 trout beta-chain-joining segments all retain the invariant mammalian J beta residues, and comparison of 66 V beta-J beta junctions led to the identification of a D beta-like sequence (GGACAGGG) that is shorter than but very similar to the chicken D beta and mammalian D beta 1 sequences. There is considerable diversity at the V beta-D beta and D beta-J beta junctions, suggesting the presence of N-nucleotides. The trout C beta extracellular domain is shorter than mammalian C beta, and the hinge region has no cysteine residue. The transmembrane C beta domain contains a lysine residue that in mammals is thought to be involved in charged interactions with members of the CD3 complex.


Subject(s)
DNA, Complementary/genetics , Oncorhynchus mykiss/genetics , RNA, Messenger/genetics , Receptors, Antigen, T-Cell, alpha-beta/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Southern , DNA, Complementary/analysis , Molecular Sequence Data , Molecular Structure , Polymerase Chain Reaction/methods , RNA, Messenger/analysis , Receptors, Antigen, T-Cell, alpha-beta/analysis , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid
13.
J Immunol ; 153(10): 4539-45, 1994 Nov 15.
Article in English | MEDLINE | ID: mdl-7963525

ABSTRACT

We have cloned 36 different rearranged variable regions (V beta) genes encoding the beta-chain of the T cell receptor in an amphibian species, Ambystoma mexicanum (the Mexican axolotl). Eleven different V beta segments were identified, which can be classified into 9 families on the basis of a minimum of 75% nucleotide identity. All the cloned V beta segments have the canonical features of known mammalian and avian V beta, including conserved residues Cys23, Trp34, Arg69, Tyr90, and Cys92. There seems to be a greater genetic distance between the axolotl V beta families than between the different V beta families of any mammalian species examined to date: most of the axolotl V beta s have fewer than 35% identical nucleotides and the less related families (V beta 4 and V beta 8) have no more than 23.2% identity (13.5% at the amino acid level). Despite their great mutual divergence, several axolotl V beta are sequence-related to some mammalian V beta genes, like the human V beta 13 and V beta 20 segments and their murine V beta 8 and V beta 14 homologues. However, the axolotl V beta 8 and V beta 9 families are not significantly related to any other V beta sequence at the nucleotide level and show limited amino acid similarity to mammalian V alpha, V kappa III, or VH sequences. The detection of nine V beta families among 35 randomly cloned V beta segments suggests that the V beta gene repertoire in the axolotl is probably larger than presently estimated.


Subject(s)
Ambystoma mexicanum/genetics , Phylogeny , Receptors, Antigen, T-Cell, alpha-beta/genetics , Ambystoma mexicanum/immunology , Amino Acid Sequence , Animals , Base Sequence , Humans , Molecular Sequence Data , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid
14.
C R Acad Sci III ; 317(8): 765-70, 1994 Aug.
Article in French | MEDLINE | ID: mdl-7882160

ABSTRACT

Using a two-step PCR strategy, we have cloned several cDNA segments encoding the T-cell receptor beta chain in a Teleost fish, the rainbow trout (Oncorhynchus mykiss). The nine clones analyzed encode identical N-terminal-truncated V beta regions which present limited sequence similarities with several mammalian TcR V beta chains, from residue Tyr-35 to residue Ser-95. These V beta regions are followed by V beta-D beta-J beta-like regions which are different in all the sequenced clones, and by identical C beta regions. The trout C beta domain (156 amino acids) is most related to the chicken and to amphibian (axolotl) C beta domains but no cysteine residue appears in the hinge region. Like in other vertebrate C beta s, the TM region carries a positively charged lysine residue (Lys-271). The intracytoplasmic domain is virtually absent. The possibility to analyze the structure, expression and diversity of a T-cell receptor chain in a Teleost fish model will be important for our future understanding of the evolution of specific immune recognition in vertebrates.


Subject(s)
DNA, Complementary/chemistry , Oncorhynchus mykiss/genetics , Receptors, Antigen, T-Cell, alpha-beta/genetics , Animals , Base Sequence , Cloning, Molecular , Molecular Sequence Data , Polymerase Chain Reaction
16.
Proc Natl Acad Sci U S A ; 90(14): 6811-4, 1993 Jul 15.
Article in English | MEDLINE | ID: mdl-8341702

ABSTRACT

All jawed vertebrates possess well-differentiated thymuses and elicit T-cell-like cell-mediated responses; however, no surface T-cell receptor (TCR) molecules or TCR genes have been identified in ectothermic vertebrate species. Here we describe cDNA clones from an amphibian species, Ambystoma mexicanum (the Mexican axolotl), that have sequences highly homologous to the avian and mammalian TCR beta chains. The cloned amphibian beta chain variable region (V beta) shares most of the structural characteristics with the more evolved vertebrate V beta and presents approximately 56% amino acid identities with the murine V beta 14 and human V beta 18 families. The two different cloned axolotl beta chain joining regions (J beta) were found to have conserved all the invariant mammalian J beta residues, and in addition, the presence of a conserved glycine at the V beta-J beta junction suggests the existence of diversity elements. The extracellular domains of the two axolotl beta chain constant region isotypes C beta 1 and C beta 2 show an impressively high degree of identity, thus suggesting that a very efficient mechanism of gene correction has been in operation to preserve this structure at least from the early tetrapod evolution. The transmembrane axolotl C beta domains have been less well conserved when compared to the mammalian C beta but they do maintain the lysine residue that is thought to be involved in the charged interaction between the TCR alpha beta heterodimer and the CD3 complex.


Subject(s)
Ambystoma/genetics , Conserved Sequence , Receptors, Antigen, T-Cell, alpha-beta/genetics , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , Lymphoid Tissue/chemistry , Models, Molecular , Molecular Sequence Data , Protein Structure, Secondary , RNA, Messenger/analysis , RNA, Messenger/genetics , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid
17.
Immunogenetics ; 38(5): 311-7, 1993.
Article in English | MEDLINE | ID: mdl-8344718

ABSTRACT

An RNA polymerase chain reaction strategy was used to amplify and clone a cDNA segment encoding for the complete constant part of the axolotl IgY heavy (C upsilon) chain. C upsilon is 433 amino acids long and organized into four domains (C upsilon 1-C upsilon 4); each has the typical internal disulfide bond and invariant tryptophane residues. Axolotl C upsilon is most closely related to Xenopus C upsilon (40% identical amino acid residues) and C upsilon 1 shares 46.4% amino acid residues among these species. The presence of additional cysteines in C upsilon 1 and C upsilon 2 domains is consistent with an additional intradomain S-S bond similar to that suggested for Xenopus C upsilon and C chi, and for the avian C upsilon and the human C epsilon. C upsilon 4 ends with the Gly-Lys dipeptide characteristic of secreted mammalian C gamma 3, human C epsilon 4, and avian and anuran C upsilon 4, and contains the consensus [G/GT(AA)] nucleotide splice signal sequence for joining C upsilon 4 to the transmembrane region. These results are consistent with the hypothesis of an ancestral structural relationship between amphibian, avian upsilon chains, and mammalian epsilon chains. However, these molecules have different biological properties: axolotl IgY is secretory Ig, anuran and avian IgY behave like mammalian IgG, and mammalian IgE is implicated in anaphylactic reactions.


Subject(s)
Immunoglobulin Constant Regions/chemistry , Immunoglobulin Heavy Chains/chemistry , Immunoglobulin Isotypes/chemistry , Ambystoma mexicanum , Amino Acid Sequence , Animals , Base Sequence , DNA/chemistry , Humans , Immunoglobulin Constant Regions/genetics , Immunoglobulin Heavy Chains/genetics , Immunoglobulin Isotypes/genetics , Molecular Sequence Data , Phylogeny
18.
Eur J Immunol ; 22(10): 2595-601, 1992 Oct.
Article in English | MEDLINE | ID: mdl-1382992

ABSTRACT

cDNA clones coding for the constant region of the Mexican axolotl (Ambystoma mexicanum) mu heavy immunoglobulin chain were selected from total spleen RNA, using a cDNA polymerase chain reaction technique. The specific 5'-end primer was an oligonucleotide homologous to the JH segment of Xenopus laevis mu chain. One of the clones, JHA/3, corresponded to the complete constant region of the axolotl mu chain, consisting of a 1362-nucleotide sequence coding for a polypeptide of 454 amino acids followed in 3' direction by a 179-nucleotide untranslated region and a polyA+ tail. The axolotl C mu is divided into four typical domains (C mu 1-C mu 4) and can be aligned with the Xenopus C mu with an overall identity of 56% at the nucleotide level. Percent identities were particularly high between C mu 1 (59%) and C mu 4 (71%). The C-terminal 20-amino acid segment which constitutes the secretory part of the mu chain is strongly homologous to the equivalent sequences of chondrichthyans and of other tetrapods, including a conserved N-linked oligosaccharide, the penultimate cysteine and the C-terminal lysine. The four C mu domains of 13 vertebrate species ranging from chondrichthyans to mammals were aligned and compared at the amino acid level. The significant number of mu-specific residues which are conserved into each of the four C mu domains argues for a continuous line of evolution of the vertebrate mu chain. This notion was confirmed by the ability to reconstitute a consistent vertebrate evolution tree based on the phylogenic parsimony analysis of the C mu 4 sequences.


Subject(s)
Ambystoma/immunology , Biological Evolution , DNA/chemistry , Immunoglobulin Constant Regions/chemistry , Immunoglobulin M/chemistry , Immunoglobulin mu-Chains/chemistry , Ambystoma/genetics , Amino Acid Sequence , Animals , Base Sequence , Conserved Sequence , Epitopes , Immunoglobulin M/genetics , Molecular Sequence Data , Polymerase Chain Reaction , RNA, Messenger/analysis , Xenopus/immunology
19.
Dev Immunol ; 2(3): 181-90, 1992.
Article in English | MEDLINE | ID: mdl-1627950

ABSTRACT

We previously reported that a primitive vertebrate, the Mexican axolotl (Amphibian, Urodela) synthesizes two classes of immunoglobulins. IgM are present in serum early in the development, and represent the bulk of specific antibody synthesis after an antigenic challenge. IgY occur in the serum later during the development, and are relatively insensitive to immunization. We demonstrate in the present work, using immunofluorescence with specific Mabs, that IgY are expressed in the gut epithelium, as secretory molecules. Secretory IgY are well expressed in the stomach and intestinal mucosae of young animals from 1 month after hatching to the seventh month. Thereafter, IgY progressively disappear from the gut and become readily detectable in the serum of 9-month-old preadult immunologically mature animals. Axolotl IgY are closely associated in the gut to secretory component-like (SC) molecules that are well-recognized by antisera to the SC of different mammalian species. This is the first description, in a primitive tetrapode, of an immunoglobulin class that could be the physiological counterpart of mammalian IgA.


Subject(s)
Ambystoma mexicanum/immunology , Immunoglobulins/biosynthesis , Secretory Component/biosynthesis , Ambystoma mexicanum/growth & development , Animals , Immunoglobulins/blood , Immunohistochemistry , Intestinal Mucosa/growth & development , Intestinal Mucosa/immunology , Secretory Component/analysis
20.
Development ; 107(2): 253-63, 1989 Oct.
Article in English | MEDLINE | ID: mdl-2698798

ABSTRACT

The ontogeny of immunoglobulin (Ig) synthesis was followed at both cellular and serological levels in the Mexican axolotl (Ambystoma mexicanum) using polyclonal antibodies recognizing all Ig molecules and a set of monoclonal antibodies (Mabs) specific for the C mu and Cv heavy Ig chain isotypes and for the light chain constituents shared by IgM and IgY molecules. Clusters of IgM- and of IgY-synthesizing lymphocytes, often located in separate sites, are first present in spleen sections of 7-week-old 25 mm larvae, about one month after differentiation of the spleen anlage (stage 39-40). In 12-week-old 30-35 mm larvae, the relative proportion of IgM- and IgY-synthesizing cells in the spleen is the same as that in adult animals. However, a marked enhancement of the spleen B cell compartment occurs from 5 to 9 months when Ig-positive cells represent about 88% of the lymphocytes population compared to 60% in adults. No structures equivalent to B cell germinal centers were observed at any stage of the spleen differentiation and cells, although often clustered in small groups, remain dispersed in the entire organ. The relative proportions of IgM and IgY B cells throughout the spleen remain constant during development (about 1 IgY+ cell for 5-6 IgM+ cells) and IgM molecules are first detected in the serum of 2.5-month-old larvae. The enhancement of the serum IgM level correlates well with the absolute number of IgM+ cells in the growing spleen. IgY molecules cannot be detected in the serum before the 7th month but their level quickly increases to reach about 60% of the adult value at 10 months. Thyroxine-induced metamorphosis or hyperimmunization of 4- to 6-month-old larvae had no effect upon the temporal expression of the Ig classes in serum.


Subject(s)
Ambystoma mexicanum/growth & development , Ambystoma/growth & development , Gene Expression , Immunoglobulins/biosynthesis , Age Factors , Ambystoma mexicanum/genetics , Ambystoma mexicanum/immunology , Animals , Blotting, Western , Enzyme-Linked Immunosorbent Assay , Fluorescent Antibody Technique , Gastric Mucosa/metabolism , Intestinal Mucosa/metabolism , Liver/metabolism , Lymphocytes/cytology , Lymphocytes/immunology , Mesonephros/metabolism , Microscopy, Phase-Contrast , Spleen/embryology , Spleen/immunology
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