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1.
PLoS One ; 19(1): e0296717, 2024.
Article in English | MEDLINE | ID: mdl-38261570

ABSTRACT

Laboratory automation can boost precision and reproducibility of science workflows. However, current laboratory automation systems are difficult to modify for custom applications. Automating new experiment workflows therefore requires development of one-off research platforms, a process which requires significant time, resources, and experience. In this work, we investigate systems to lower the threshold to automation for plant biologists. Our approach establishes a direct connection with a generic motion platform to support experiment development and execution from a computational notebook environment. Specifically, we investigate the use of the open-source tool-changing motion platform Jubilee controlled using Jupyter notebooks. We present the Duckbot, a machine customized for automating laboratory research workflows with duckweed, a common multicellular plant. The Duckbot comprises (1) a set of end-effectors relevant for plant biology, (2) software modules which provide flexible control of these tools, and (3) computational notebooks which make use of these tools to automate duckweed experiments. We demonstrate the Duckbot's functionality by automating a particular laboratory research workflow, namely, duckweed growth assays. The Duckbot supports setting up sample plates with duckweed and growth media, gathering image data, and conducting relevant data analysis. We discuss the opportunities and limitations for developing custom laboratory automation with this platform and provide instructions on usage and customization.


Subject(s)
Araceae , Reproducibility of Results , Automation, Laboratory , Biological Assay , Bone Plates
2.
Nano Lett ; 24(3): 920-928, 2024 Jan 24.
Article in English | MEDLINE | ID: mdl-38207109

ABSTRACT

Organic nanoparticles are used in nanomedicine, including for cancer treatment and some types of COVID-19 vaccines. Here, we demonstrate the scalable, rapid, reproducible, and cost-effective synthesis of three model organic nanoparticle formulations relevant to nanomedicine applications. We employed a custom-made, low-cost fluid mixer device constructed from a commercially available three-dimensional printer. We investigated how systematically changing aqueous and organic volumetric flow rate ratios determined liposome, polymer nanoparticle, and solid lipid nanoparticle sizes, size distributions, and payload encapsulation efficiencies. By manipulating inlet volumes, we synthesized organic nanoparticles with encapsulation efficiencies approaching 100% for RNA-based payloads. The synthesized organic nanoparticles were safe and effective at the cell culture level, as demonstrated by various assays. Such cost-effective synthesis approaches could potentially increase the accessibility to clinically relevant organic nanoparticle formulations for personalized nanomedicine applications at the point of care, especially in nonhospital and low-resource settings.


Subject(s)
Drug Delivery Systems , Nanoparticles , Humans , Drug Delivery Systems/methods , Nanomedicine/methods , Point-of-Care Systems , COVID-19 Vaccines , Cost-Benefit Analysis , Liposomes
3.
Onco Ther ; 9(2): 43-55, 2022.
Article in English | MEDLINE | ID: mdl-37309487

ABSTRACT

A class of plant polysaccharides, pectin is known to display several medicinal properties including in cancer. There is some evidence that pectin from some fruits can reduce the severity of colorectal cancer (CRC) due to its antiproliferative, anti-inflammatory, antimetastatic and pro-apoptotic properties. Pectin fermentation in the colon induces antiproliferative activity via butyrate. Research also showed that pectin acts as a potent inducer of programmed cell death and cell-cycle arrest, thereby selectively targeting cancer cells. Pectin can limit oxidative stress to maintain cellular homeostasis while increasing reactive oxygen species damage to activate cancer cell death. Pectin regulates various signaling cascades, e.g., signal transduction and transcriptional activator and mitogen-activated protein kinase signaling, that contribute to its anticancer activity. By curbing inflammation-activated signaling and bolstering immune-protective mechanisms pectin can eradicate CRC. Due to its chemical structure, pectin can also inhibit galectin-3 and suppress tumor growth and metastasis. Prior reports also suggested that pectin is beneficial to use alongside the CRC standard care. Pectin can increase sensitivity to conventional CRC drugs, alleviate unwanted side effects and reduce drug resistance. Although some preclinical studies are promising, early clinical trials are showing some evidence for pectin's efficacy in tumor growth inhibition and preventing metastasis in some cancers; however, the clinical use of pectin in CRC therapy is not yet well established. Further studies are needed to confirm the efficacy of pectin treatment as a valid clinical therapy for CRC in humans.

4.
PLoS One ; 12(9): e0182210, 2017.
Article in English | MEDLINE | ID: mdl-28877176

ABSTRACT

Creativity can be considered one of the key competencies for the twenty-first century. It provides us with the capacity to deal with the opportunities and challenges that are part of our complex and fast-changing world. The question as to what facilitates creative cognition-the ability to come up with creative ideas, problem solutions and products-is as old as the human sciences, and various means to enhance creative cognition have been studied. Despite earlier scientific studies demonstrating a beneficial effect of music on cognition, the effect of music listening on creative cognition has remained largely unexplored. The current study experimentally tests whether listening to specific types of music (four classical music excerpts systematically varying on valance and arousal), as compared to a silence control condition, facilitates divergent and convergent creativity. Creativity was higher for participants who listened to 'happy music' (i.e., classical music high on arousal and positive mood) while performing the divergent creativity task, than for participants who performed the task in silence. No effect of music was found for convergent creativity. In addition to the scientific contribution, the current findings may have important practical implications. Music listening can be easily integrated into daily life and may provide an innovative means to facilitate creative cognition in an efficient way in various scientific, educational and organizational settings when creative thinking is needed.


Subject(s)
Creativity , Happiness , Music , Thinking , Acoustic Stimulation , Affect , Arousal , Female , Humans , Male , Surveys and Questionnaires
5.
J Voice ; 27(4): 523.e35-48, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23769004

ABSTRACT

A 3-year longitudinal study was conducted to investigate changes in vocal quality as a result of singing training at a tertiary level conservatorium in Australia. Singers performed a messa di voce (MDV) at intervals of 6 months over the 3-year period of training. The study investigated the evolving acoustic features of the singers' voices exhibited during the MDV, including sound pressure level (SPL), short-term energy ratio (STER), duration, and vibrato parameters of the fundamental frequency (F0), SPL, and STER. The maximum SPL exhibited a marginal systematic increase over the training period, but the maximum STER did not systematically change. F0 vibrato extent increased significantly, whereas the extent of SPL and STER vibrato did not change significantly.


Subject(s)
Phonation , Singing , Voice Quality , Voice Training , Acoustics , Adolescent , Analysis of Variance , Auditory Perception , Australia , Biomechanical Phenomena , Female , Humans , Judgment , Longitudinal Studies , Male , Pressure , Signal Processing, Computer-Assisted , Sound Spectrography , Time Factors , Vibration , Young Adult
6.
J Voice ; 24(1): 39-46, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19185455

ABSTRACT

The male classical singing voice is a musical instrument that is very important in western culture. It has many acoustic features which should change and improve over the period in which the singer trains. In this study we compare nine singers in different stages of training, from university level students through to international soloists. Typically, Energy Ratio (ER; a measure of mean spectral slope) and mean sound pressure level (SPL) may be calculated to summarize an entire singing sample. We investigate an alternative approach, by calculating the time-varying ER and SPL. The inspection of the distribution of these descriptors over an aria's time period yields a more detailed picture of the strategies for high-frequency energy production used by singers with different levels of training.


Subject(s)
Music , Practice, Psychological , Pressure , Speech Acoustics , Voice , Adult , Humans , Male , Middle Aged , Regression Analysis , Sound Spectrography , Time Factors , Young Adult
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