MNAzymes and gold nanoparticles as isothermal signal amplification strategy for visual detection of miRNA.

MicroRNAs (miRNAs) represent a class of small noncoding RNAs that are considered a novel emerging class of disease biomarkers in a variety of afflictions. Sensitive detection of miRNA is typically achieved using hybridization-based methods coupled with genetic amplification techniques. Although their sensitivity has improved, amplification techniques often present erroneous results due to their complexity. In addition, the use of these techniques is usually linked to the application of protein enzymes, the activity of which is dependent on the temperature and pH of the medium. To address these drawbacks, an alternative genetic enzyme for the highly sensitive detection of miRNAs is proposed in this work. Multicomponent nucleic acid enzymes (MNAzymes), coupled with the use of DNA-functionalized gold nanoparticles (AuNPs), were used in this study to develop an isothermal signal amplification strategy for visual genetic detection. miR146a, a biomarker of bovine mastitis present in milk, was selected as a model analyte. The developed methodology is easily carried out in 80 min at 50 °C, generating a low visual limit of detection of 250 pM based on the observation of a color change. The methodology was successfully applied to the detection of miR146a in raw cow milk samples.

Gold Nanoparticle Smartphone Platform for Diagnosing Urinary Tract Infections.

Current urinary tract infection (UTI) diagnostic methods are slow or provide limited information, resulting in prescribing antibiotic therapy before bacterial pathogen identification. Here, we adapted a gold nanoparticle colorimetric approach and developed a smartphone platform for UTI detection. We show the parallel identification of five major UTI pathogens at clinically relevant concentrations of 105 bacteria/mL using bacteria-specific and universal probes. We validated the diagnostic technology using 115 positive and 19 negative samples from patients with Escherichia coli, Proteus mirabilis, and Klebsiella pneumoniae infections. The assay successfully identified the infecting pathogen (specificity: >98% and sensitivity: 51-73%) in 3 h. Our platform is faster than culturing and can wirelessly store and transmit results at the cost of $0.38 per assay.

Visual detection of microRNA146a by using RNA-functionalized gold nanoparticles.

Gold nanoparticles of different sizes have been synthesized and surface-functionalized with selected RNA probes in order to develop a rapid, low-cost and sensitive method for detection of microRNA146a (miR146a). The strategy is based on the change of colour that can be observed visually after aggregation of the RNA modified-gold nanoparticles (AuNPs) in presence of miR146a. Experimental conditions have been carefully selected in order to obtain a good sensitivity that allows to perform visual detection of microRNA at the nM level, achieving a detection limit of 5 nM. Good repeatability and selectivity versus other sequences that only differ from miR146a in 3 bases was achieved. miR146a has been described as one of the main microRNA involved in the immune response of bovine mastitis, being expressed in tissue, blood and milk samples. The method was successfully applied to the detection of miR146a in raw cow milk samples. The present scheme constitutes a rapid and low-cost alternative to perform highly sensitive detection of microRNA without the need of instrumentation and amplification steps for the early detection of bovine mastitis in the agrofood industry. Graphical abstract Schematic representation of the assay based on aggregation of RNA-modified gold nanoparticles (blue) in presence of microRNA146a generating a dark blue spot onto a solid support, versus a pink spot observed in absence of miR146a due to dispersed gold nanoparticles (red).

Quantum Dot Bioconjugates for Diagnostic Applications.

Quantum dots (QDs) are a special type of engineered nanomaterials with outstanding optoelectronic properties that make them as a very promising alternative to conventional luminescent dyes in biomedical applications, including biomolecule (BM) targeting, luminescence imaging and drug delivery. A key parameter to ensure successful biomedical applications of QDs is the appropriate surface modification, i.e. the surface of the nanomaterials should be modified with the appropriate functional groups to ensure stability in aqueous solutions and it should be conjugated with recognition elements capable of ensuring an efficient tagging of the BMs of interest. In this review we summarize the most relevant strategies used for surface modification of QDs and for their conjugation to BMs in preparation of their application in nanoplatforms for luminescent BM sensing and imaging-guided targeting. The applications of conjugations of photoluminescent QDs with different BMs in both in vitro and in vivo chemical sensing, immunoassays or luminescence imaging are reviewed. Recent progress in the application of functionalized QDs in ultrasensitive detection in bioanalysis, diagnostics and imaging strategies are reported. Finally, some key future research goals in the progress of bioconjugation of QDs for diagnosis are identified, including novel synthetic approaches, the need for exhaustive characterization of bioconjugates and the design of signal amplification schemes.

Functionalized phosphorescent nanoparticles in (bio)chemical sensing and imaging - A review.

Inorganic nanoparticles are a fascinating class of materials which promise great potential in numerous fields, including optical (bio)sensing. Many different kinds of such nanoparticles have been widely used for fluorescent sensing and imaging due to the different merits of fluorescent nanoparticles compared to molecular fluorophores. Progress made in the rational design of nanomaterials also allowed the synthesis of hybrid phosphorescent nanoparticles, that finds growing applications in sensing due to the combination of the interesting size- and shape-dependent properties of nanomaterials with a phosphorescence-type emission. In this review, we intend to highlight some of progress made in this active research area and update the database of various phosphorescent nanoparticles-based sensors on the basis of different sensing targets of interest in environmental, industrial and biomedical areas. Following an introduction and a discussion of merits of the synergy between nanomaterials and phosphorescence detection as compared to molecular luminophores the article assesses the kinds and specific features of nanomaterials often used in phosphorescence sensing. Specific examples on the use of phosphorescence nanoparticles in chemical sensing and bioimaging are given next. A final section intends to provide an overview of the prospects of such type of nanomaterials in the design of future devices for analytical chemistry.

Near-infrared fluorescent nanoprobes for highly sensitive cyanide quantification in natural waters.

Near infrared (NIR) emitting Ag2S quantum dots have been synthesized, characterized and evaluated for chemical sensing applications. After their optical characterization, it was observed that the Ag2S quantum dots present both, excitation and emission in the NIR region, and an excellent quantum yield of 33.2%. These features are of great value for many biological applications, since autofluorescence of biological tissues or cells is minimized, and also for environmental applications, where other fluorescent concomitant species with excitation and emission in the ultraviolet-visible region might be present. Different purification procedures were evaluated in order to obtain a stable and homogeneous population of nanoparticles, which is necessary to perform quantitative analysis (e.g.: mass spectrometry-based applications), as well as to obtain a narrow NIR emission spectrum for optical applications. Comprehensive characterization using X-ray diffraction, transmission electron microscopy, and asymmetric flow field flow fractionation coupled to inductively coupled plasma-mass spectrometry has been performed to obtain parameters not easily achieved and of great interest in different research areas, such as the nanoparticle concentration NIR-emitting nanoparticles, and the surface ligand density, which directly affects to the interactions of the nanoparticles with their close environment, including unspecific adsorptions, cellular uptake, macrophage interaction, etc. Finally, the capability for sensing analytes of environmental interest based on direct-interactions of a reactive compound with the surface of the nanoparticle has been also evaluated. Quenching of the NIR emission upon interaction of the Ag2S quantum dots with cyanide ions was observed. Hence, a rapid, selective and highly sensitive methodology was developed for the detection of cyanide in natural waters.

Green synthesis of fluorescent carbon dots from spices for in vitro imaging and tumour cell growth inhibition.

Carbon dots have demonstrated great potential as luminescent nanoparticles in bioapplications. Although such nanoparticles appear to exhibit low toxicity compared to other metal luminescent nanomaterials, today we know that the toxicity of carbon dots (C-dots) strongly depends on the protocol of fabrication. In this work, aqueous fluorescent C-dots have been synthesized from cinnamon, red chilli, turmeric and black pepper, by a one-pot green hydrothermal method. The synthesized C-dots were firstly characterized by means of UV-vis, fluorescence, Fourier transform infrared and Raman spectroscopy, dynamic light scattering and transmission electron microscopy. The optical performance showed an outstanding ability for imaging purposes, with quantum yields up to 43.6%. Thus, the cytotoxicity of the above mentioned spice-derived C-dots was evaluated in vitro in human glioblastoma cells (LN-229 cancer cell line) and in human kidney cells (HK-2 non-cancerous cell line). Bioimaging and viability studies were performed with different C-dot concentrations from 0.1 to 2 mg·mL-1, exhibiting a higher uptake of C-dots in the cancer cultures compared to the non-cancerous cells. Results showed that the spice-derived C-dots inhibited cell viability dose-dependently after a 24 h incubation period, displaying a higher toxicity in LN-229, than in HK-2 cells. As a control, C-dots synthesized from citric acid did not show any significant toxicity in either cancerous or non-cancerous cells, implying that the tumour cell growth inhibition properties observed in the spice-derived C-dots can be attributed to the starting material employed for their fabrication. These results evidence that functional groups in the surface of the C-dots might be responsible for the selective cytotoxicity, as suggested by the presence of piperine in the surface of black pepper C-dots analysed by ESI-QTOF-MS.

Detection of Sulfide Using Mercapto Tetrazine-Protected Fluorescent Gold Nanodots: Preparation of Paper-Based Testing Kit for On-Site Monitoring.

This work demonstrates the development of a highly sensitive method to detect and quantify sulfide ions (S2-) in water samples. First, we synthesized 6-mercapto-s-triazolo(4,3-b)-s-tetrazine (MTT) by the reaction between formaldehyde and 4-amino-3-hydrazino-5-mercapto-1,2,4-triazole at room temperature. The synthetic MTT was used as a capping ligand for the synthesis of gold nanodots (AuNDs) via a one-pot green method at room temperature with only a 10 min reaction time. Transmission electron microscopy images exhibited that the MTT-AuNDs have an average particle size of 1.9 nm and an emission maximum at 672 nm upon excitation at 360 nm. The synthesized highly red emissive MTT-AuNDs are used as specific fluorescent probes for the detection of S2-. The fluorescence of MTT-AuNDs was significantly and dose-dependently quenched by the addition of S2-. The observed fluorescence quenching was ascribed to the formation of an Au2S complex, which was determined by Raman and mass spectroscopy. A good linearity was achieved for the increasing concentration of S2- from 870 nM to 16 µM, and the detection limit was found to be 2 nM (S/N = 3). The S2- detection system that is described in this study was validated and agreed well with the standard methylene blue method. Furthermore, the present sensor was examined for its use in quantifying S2- in real water samples obtained from lakes and rivers. In addition, the specificity was checked against the most likely ion interferences in real water. Moreover, a cost-effective and viable paper-based S2- sensor was fabricated for environmental monitoring based on the use of MTT-AuNDs. The developed system would be an environmentally friendly and easy-to-use detection device for S2- in water.

Sensitive prostate specific antigen quantification using dihydrolipoic acid surface-functionalized phosphorescent quantum dots.

Herein, high-quality Mn-doped ZnS quantum dots (QDs) have been synthesized using a facile approach directly in aqueous media. The surface of the obtained QDs was further modified by cap-exchange of the native cysteine shell with dihydrolipoic acid (DHLA) ligands resulting in nanocrystals with high water-stability having an intense phosphorescent signal. Covalent bioconjugation of the DHLA-coated nanoparticles with an anti-IgG antibody was then carried out. Interestingly the QD immunoprobe (QD-labelled antibodies) maintained an intense phosphorescence emission, without any significant spectral-shift (as compared to the free QDs). Coupling of an asymmetric flow field flow fractionation technique to an elemental mass spectrometry detection enabled the accurate determination of the efficiency of the bioconjugation reaction. The obtained nanoparticle-antibody bioconjugate was then applied to develop a quantitative sandwich-type phosphorescent immunoassay for Prostate Specific Antigen (PSA), and a limit of detection (LOD) of 17 pg mL-1 of PSA was achieved and allow to quantify such biomarker in samples within clinically relevant levels. Finally, the assay was validated for the quantification of PSA in the cellular media of prostate cancer cells. Obtained results proved the robustness of the proposed immunoassay based on long-lived phosphorescence measurements against eventual photoluminescent interferences significantly affecting the conventional short-lived fluorescence detection.

Quantum dot-based array for sensitive detection of Escherichia coli.

A fluorescent quantum dot-based antibody array, used in sandwich format, has been developed to detect Escherichia coli O157:H7. Numerous parameters such as solid support, optimal concentration of immunoreagents, blocking reagents, and assay time were optimized for array construction. Quantum dot-conjugated anti-IgG was used as the detecting system. The array allows the detection of E. coli O157:H7 at concentrations below 10 CFU mL(-1) without sample enrichment, exhibiting an increase of three orders of magnitude in the limit of detection compared to ELISA. The interference caused by Gram (+) and Gram (-) bacteria was negligible at low concentrations of bacteria.

Nanoparticles as fluorescent labels for optical imaging and sensing in genomics and proteomics.

Optical labelling reagents (dyes and fluorophores) are an essential component of probe-based biomolecule detection, an approach widely employed in a variety of areas including environmental analysis, disease diagnostics, pharmaceutical screening, and proteomic and genomic studies. Recently, functional nanomaterials, as a new generation of high-value optical labels, have been applied to molecular detection. The great potential of such recent optical labels has paved the way for the development of new biomolecule assays with unprecedented analytical performance characteristics, related to sensitivity, multiplexing capability, sample throughput, cost-effectiveness and ease of use. This review aims to provide an overview of recent advances using different nanoparticles (such as quantum dots, rare earth doped nanoparticles or gold nanoparticles) for analytical genomics and proteomics, with particular emphasis on the outlook for different strategies of using nanoparticles for bioimaging and quantitative bioanalytical applications, as well as possibilities and limitations of nanoparticles in such a growing field.

Synthesis and characterization of polymer-coated quantum dots with integrated acceptor dyes as FRET-based nanoprobes.

A fluorescence resonance energy transfer pair consisting of a colloidal quantum dot donor and multiple organic fluorophores as acceptors is reported and the photophysics of the system is characterized. Most nanoparticle-based biosensors reported so far use the detection of specific changes of the donor/acceptor distance under the influence of analyte binding. Our nanoparticle design on the other hand leads to sensors that detect spectral changes of the acceptor (under the influence of analyte binding) at fixed donor/acceptor distance by the introduction of the acceptor into the polymer coating. This approach allows for short acceptor-donor separation and thus for high-energy transfer efficiencies. Advantageously, the binding properties of the hydrophilic polymer coating further allows for addition of poly(ethylene glycol) shells for improved colloidal stability.

Flow-through optosensing of 1-naphthaleneacetic acid in water and apples by heavy atom induced-room temperature phosphorescence measurements.

A sensitive and selective phosphorimetric method for the determination of 1-naphthaleneacetic acid (1-NAA) based on a flow-injection system connected to a flow cell packed with a solid support and placed in the sample compartment of a conventional luminescence spectrometer is described. A non-ionic solid polymeric resin Amberlite XAD-7 is used for the packing. After injection of the sample, 1-NAA is on-line retained in the packed resin and measurements of the heavy atom induced (HAI)-room temperature phosphorescence (RTP) emission (lambda(ex)/lambda(em)=292/490nm) from this native luminescent compound are taken. The optimum experimental conditions were investigated by injecting 2ml samples of an aqueous solution of 1-NAA in the flow system. A concentration 0.15moll(-1) of thallium(I) ions, as heavy atom, both in the samples and the carrier flow, was finally selected. Also, a concentration of 6mmoll(-1) of sulphite was optimal for ensuring the necessary deoxygenation of the system at the selected flow rate of 0.8mlmin(-1). After measurement, the solid support was efficiently regenerated by injecting 1ml of a mixture water:acetone in a ratio 1:1 (v/v) into the flow. The detection limit (3sigma criterion) was 1.2ngml(-1) of 1-NAA. The repeatability (R.S.D.) for five replicates of a sample containing 50ngml(-1) of analyte turned out to be +/-3% and the calibration graphs proved to be linear up to 500ngml(-1) of 1-NAA (maximum concentration assayed). The effect of potential interferences from other organic species which can be also used as plant growth regulators, as well as from various inorganic cations and anions, has been investigated as well. The method was successfully applied to the determination of low levels of this plant growth regulator in natural waters (river and fountain waters) and apples.

Flow injection determination of nitrite by fluorescence quenching.

A simple, sensitive and selective fluorimetric method for the determination of nitrite ion in waters using a merging zones flow injection system is described. The fluorimetric determination is based on the measurement of the quenching effect produced by nitrite on proflavine (3,6-diaminoacridine) fluorescence (lambda(ex)/lambda(em)=290/519nm). The optimum experimental conditions were investigated by merging 0.5ml of the sample and 0.5ml of a solution of 5mgl(-1) of proflavine (in 0.1M HCl) in a flow injection system, on-line connected to a flow-cell placed in the conventional sample compartment of a spectrofluorimeter. The selected carrier solution and final flow rate were 0.1M HCl and 0.5mlmin(-1), respectively. A reaction coil of 2ml was used. As a result of the simplicity of this system, a sample throughput of about 50 samplesh(-1) can be achieved with the proposed methodology. The detection limit was 1.1ngml(-1) (3sigma criterion) of nitrite. The repeatability for five sample injections containing 100ngml(-1) of nitrite was +/-0.3% and the observed linear range extended up to 400ngml(-1). Also, the effect of interferences from various metals and anions commonly present in waters was also studied. The method was successfully applied to the determination of low levels of nitrite in different water samples (river, fountain, tap and commercial drinking waters).