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1.
PLoS One ; 19(1): e0287119, 2024.
Article in English | MEDLINE | ID: mdl-38165909

ABSTRACT

BACKGROUND: Approximately 80% of infected women infected by Chlamydia trachomatis are asymptomatic, although this infection can lead to serious complications in the female reproductive tract. Few data on Chlamydia infection and genotypes are available in Amazonian communities. OBJECTIVES: To describe the prevalence of and associated factors and to identify the genotypes of sexual C. trachomatis infection in female university students in different urban centers (capital and interiors) in the Brazilian state of Pará, in the eastern Amazon region. METHODS: A cross-sectional study was performed among young women attending public universities in four different urban centers in the eastern Amazon region. They were invited to participate in the studt and cervical secretions were collected for molecular diagnosis of C. trachomatis. We utilized amplification of the ompA gene by nested PCR. Positive samples were genotyped by nucleotide sequencing. Study participants completed a questionnaire on social, epidemiological, and reproductive health variables. A Qui-square and Binominal regression test were used to evaluate the degree of association of these variables with the infection. RESULTS: A total of 686 female students was included in the study. The overall prevalence of C. trachomatis was 11.2% (77/686). The prevalence of this infection was higher in interiors (15.2% vs 9.5%/ p: 0.0443). Female university students who do not have a sexual partner (11.8%/p <0.008), who do not use a condom in their sexual relations (17.8%/p <0.0001) and who reported having suffered a miscarriage (32%/p <0.0001) have high chances of acquiring this sexual infection. The ompA gene was sequenced in only 33 (42.8%) samples, revealing the genotype J was the most frequent (27.2% [9/33]), followed by genotypes D (24.2% [8/33]), and then genotypes F (18.2% [6/33]), E (15.1% [5/33]) K (6.1% [2/33]), Ia (6.1% [2/33]), and G (3.1% [1/33]). CONCLUSIONS: The high prevalence of sexual infection by C. trachomatis in the female university students from the interior of the state of Pará, individuals with no fixed sexual partner, those that had had a miscarriage, the students that do not use condoms in their sexual relations. The genotype J of C. trachomatis genotypes was the most frequent. These data are important to help defining the epidemiological effects of chlamydial infections in Amazonian populations.


Subject(s)
Abortion, Spontaneous , Chlamydia Infections , Pregnancy , Humans , Female , Chlamydia trachomatis/genetics , Universities , Prevalence , Cities/epidemiology , Brazil/epidemiology , Cross-Sectional Studies , Chlamydia Infections/epidemiology , Chlamydia Infections/diagnosis , Genotype
2.
PLoS One ; 17(7): e0270874, 2022.
Article in English | MEDLINE | ID: mdl-35849577

ABSTRACT

BACKGROUND: The Human Papillomavirus (HPV) and Chlamydia trachomatis are the most prevalent Sexually Transmitted Infections (STIs) worldwide, and are associated cervical cancer and pelvic inflammatory disease, respectively. However, 80% of women testing positive are asymptomatic. In the Amazon region, young women, in particular, are widely exposed to the infections and their consequences. OBJECTIVES: Determine the prevalence of sexual infection by HPV and C. trachomatis in young, sexually-active women treated at a university health program in a large city of the Brazilian Amazon region. METHODS: We amplified the L1 gene of HPV. We amplified ompA gene of C. trachomatis by nested PCR, and the study participants filled in a questionnaire on their social, epidemiological, and reproductive health characteristics. The data were analyzed using the Odds Ratio, to evaluate the degree of association of these variables with the observed infections. RESULTS: The prevalence of infection by HPV was 15.5% (47/303). This infection was recorded in 32.2% of the women of less than 25 years of age (OR:3.02 [CI95%] = 1.32-6.92; p = 0.014), 17.9% of the single women (OR: 2.41 [CI95%] = 1.22-4.75; p = 0.014), 23.8% of the women that reported having first sexual intercourse at less than 15 years of age (OR: 2.22 [CI95%] = 1.16-4.23; p = 0.021), 20% of those that reported having had more than one sexual partner during their lifetime (OR: 3.83 [CI95%] = 1.56-9.37; p = 0.003), and in 28.3% that use oral contraceptives (CI95% = 1.33-5.43; p = 0.008). The prevalence of sexual infection by C. trachomatis was 4.6% (14/303), and this bacterium was present in 16.1% of the young women of less than 25 years of age (OR: 2.86 [CI95%] = 1.33-5.43; p = 0.008). CONCLUSIONS: We found a high prevalence of HPV in young, unmarried women who started their sex lives early, who had several sexual partners in their lives and who used oral contraceptives. The prevalence of C. trachomatis was high only in young women. Our data are in accordance with other studies in Brazil and in the world and may serve to base the formulation of diagnostic and screening measures for these infections in women in the Amazon.


Subject(s)
Alphapapillomavirus , Chlamydia Infections , Papillomavirus Infections , Brazil/epidemiology , Chlamydia Infections/epidemiology , Chlamydia trachomatis , Contraceptives, Oral , Female , Humans , Papillomaviridae/genetics , Papillomavirus Infections/epidemiology , Prevalence , Risk Factors , Sexual Behavior
3.
Evolution (N Y) ; 15(1): 10, 2022.
Article in English | MEDLINE | ID: mdl-35789576

ABSTRACT

Intelligent Personal Assistants (IPAs), such as Amazon's Alexa, are now widely used for an ample variety of tasks, ranging from personal management to education. These tools have shown considerable promise for student-educator interactions, especially at a distance, a potential that has come to the forefront during the ongoing COVID-19 pandemic. Even so, this potential is still underexploited, even in the current scenario. Alexa's apps are known as skills, which include all the different commands that Alexa is capable of executing. It is important to note, however, that the use of such technology is work-intensive and can be relatively complex. Given this, to facilitate the development of new skills in Alexa, we have developed an online tool that permits the creation of questions and answers, as well as honing the interaction between Alexa and the user. We have named this tool ForAlexa, which has two types of forms, Question-And-Answer (Q&A) and Random-Quote. Both these forms allow the user to build intents (an activity that is invoked by a spoken request from the user), but with slightly different functions. The Q&A form is used to compile answers that Alexa will offer in response to an utterance (question), while the Random-Quote extends the interaction between Alexa and the user, based on the questions asked in the first form. ForAlexa also has a help assistant, as well as a manual, which explains all the steps necessary for the design of an intent. This tool allows educators to develop apps quickly and easily for their classes and this type of app could be an alternative to be used for students with special needs, such as the visually-impaired. Supplementary Information: The online version contains supplementary material available at 10.1186/s12052-022-00169-z.

4.
Am J Primatol ; 84(6): e23341, 2022 06.
Article in English | MEDLINE | ID: mdl-34662461

ABSTRACT

Primates are affected by fluctuations in ambient temperatures, mostly through thermoregulatory costs and changes in the availability of food. In the present study, we investigate whether the ambient temperature and proxies of food availability affect the activity period of marmosets (Callithrix spp.). We predicted that: (i) at colder sites, marmosets would spend more time at sleeping sites; (ii) midday resting bouts would be longer at hotter sites; (iii) the onset/cessation of activity and resting behavior at midday would be more closely related to temperature than food availability, and (iv) highly exudativorous groups would have higher total levels of resting. We compiled data on the onset and cessation of activity and the time spent resting at midday from seven marmoset studies from sites with a wide range of temperatures. We used generalized linear mixed models to verify the relationship between the dependent variables (lag between dawn and the onset of activities, lag between cessation of activities and dusk, and proportion of resting during midday) and the minimum and maximum temperatures at the respective study sites, together with proxies of food availability (exudativory rates, the amount of habitat available per individual, and net primary productivity) using each sample month as a sampling unit and the identity of the study as a categorical random factor. At colder sites and during colder months, the marmosets left sleeping trees later in the morning and ceased their activities earlier, while at hotter sites and during hotter months, they spent more time resting during midday. More exudativorous groups become active later in the morning, but also ceased their activities later. The abundance of food did not affect the timing of activities. We provide evidence that both low and high temperatures affect marmosets' activities, and that their activity period appears to be more influenced by the thermal environment than food availability.


Subject(s)
Callithrix , Ecosystem , Animals , Temperature , Trees
5.
Acta sci., Biol. sci ; Acta sci., Biol. sci;42: e49958, fev. 2020. map, tab, ilus, graf
Article in English | LILACS, VETINDEX | ID: biblio-1460952

ABSTRACT

Less than 10% of the original Atlantic Forest cover now remains standing in the Brazilian state of Sergipe, although few scientific studies have focused on its mammalian diversity. The present study describes the diversity of non-volant mammals found in the Ibura National Forest (INF), based on live trapping, and direct and indirect observations. We sampled the IBF on six days per month between June 2012 and August 2013, using live-traps (Sherman-type) positioned in pairs (ground and understory). We equally sampled semideciduous forest and an abandoned Eucalyptusplantation with dense understory (over 30 years). We also used non-systematics methods (direct observations, vestiges, camera-trap, and opportunistic captures). We recorded 18 species, from 12 families and 7 orders considering all the applied methods. Among recorded species, Bradypus torquatusand Lontra longicaudisare considered threatened of extinction. Considering only the live-trapping (totaling 3,240 trapping nights), we captured 125 individuals (3.85% success) from four species, Marmosa demerarae(52%), Didelphis albiventris(19.2%), Cerradomys vivoi(15.2%), and M. murina(13.6%). Estimated and observed richness was the same, suggesting a satisfactory effort. Didelphis albiventrisand M. demeraraeshowed significantly higher captures in the dry seasons. Didelphis albiventrisand C.vivoishowed significantly higher captures in the substratum, and M. demeraraehigher in the understory. Cerradomysvivoishowed significantly higher captures in the Eucalyptusphytophysiognomy. Non-Metric Multidimensional Scaling and the ANOSIM showed a significant difference in the captured species among semidecidual forest and Eucalyptus. Despite the small area (144 ha), the INF still houses a relatively high mammalian diversity. Further investigations may help to understand the role of habitat reduction in the diversity and habitat partitioning among mammal species in the Atlantic Forest of Northeastern Brazil.


Subject(s)
Animals , Biodiversity , Ecosystem , Mammals/anatomy & histology , Protected Areas/analysis
6.
Primates ; 60(6): 559-563, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31440864

ABSTRACT

Fur rubbing or anointing is a well known behavior in capuchin monkeys (Cebus and Sapajus), and may have medicinal and/or social functions. Observations of anointing in capuchins have recorded the application of substances derived from both plants (orange, onion, garlic, citronella, and lemongrass) and animals (ants and millipedes). The present study reports on anointing behavior in free-ranging white-headed capuchins, Cebus capucinus, which involved a commercial insect repellent. After looting a bottle of repellent from the bag of a visitor to the Manuel Antonio National Park in Costa Rica, an adult male bit open the bottle and rubbed the leaking liquid over its entire body, focusing mainly on its belly. Other members of the group rubbed themselves against the male's body and were eventually able to retrieve the bottle of repellent and anoint themselves. The repellent is composed mainly of extracts of eucalyptus and citronella. The capuchins may have been attracted by the strong citric scent of the citronella, which is known to stimulate fur-rubbing behavior in these monkeys. This is reinforced by the fact that the sequence of events was quite distinct from that associated with an earlier event, in which a juvenile male looted, tasted, and then discarded a stick of lip gloss and a tube of sunblock. Overall, the observations indicate that the citric scent of the repellent was attractive to the capuchins, especially in comparison with other man-made substances. As the animals partially ingested all the substances, there is clearly a need for more effective regulation of the contact between animals and visitors in the park.


Subject(s)
Cebus capucinus/physiology , Insect Repellents , Social Behavior , Animals , Costa Rica , Grooming , Parks, Recreational
7.
Neotrop. ichthyol ; 17(2): e180038, 2019. tab, graf
Article in English | VETINDEX, LILACS | ID: biblio-1012720

ABSTRACT

The Brazilian North coast is one of the world's most important shrimp fishery grounds, with a total area of approximately 223,000 km2. However, the available data on the diversity of fish caught by the region's industrial trawler fleet are limited to the commercially-valuable species. This lacuna in the data on the region's marine fish fauna is worrying, both for the management of stocks and the conservation of the local biodiversity. The present study was based on a comprehensive inventory of the teleost fishes captured by the industrial outrigger trawling operations off the North coast of Brazil. This inventory recorded 201 species belonging to 64 families and 20 orders, and revealed a unique fauna, characterized by 17 endemic species, and a mixture of estuarine-dependent and marine species, mainly associated with coral reefs. The Kernel density analysis indicated that the industrial trawling fleet operates within an important ecotone, which encompasses the transition zones of different fish communities found off the Brazilian North coast.(AU)


A costa Norte do Brasil é um dos pesqueiros de camarão mais importantes do mundo, com uma área total de aproximadamente 223.000 km2. No entanto, dados disponíveis sobre a diversidade de peixes capturados pela frota industrial de arrasto de portas na região são limitados às espécies com valor comercial. Essa lacuna no conhecimento sobre a fauna de peixes marinhos da região é preocupante, tanto para o manejo dos estoques quanto para a conservação da biodiversidade local. O presente estudo é baseado num inventário abrangente dos peixes teleósteos capturados por operações de arrasto de portas da frota industrial que opera na costa Norte do Brasil. Este inventário registrou 201 espécies pertencentes a 64 famílias e 20 ordens, e revelou uma fauna única, caracterizada por 17 espécies endêmicas, e uma mistura de espécies estuarino-dependentes e espécies marinhas, principalmente associadas a recifes de corais. A análise da densidade Kernel indicou que a frota industrial de arrasto de portas opera dentro de um importante ecótono, que abrange uma zona de transição de diferentes comunidades de peixes encontrados na costa Norte do Brasil.(AU)


Subject(s)
Animals , Biodiversity , Fishes/classification
8.
Neotrop. ichthyol ; 17(2): e180038, 2019. tab, graf
Article in English | VETINDEX | ID: vti-22133

ABSTRACT

The Brazilian North coast is one of the world's most important shrimp fishery grounds, with a total area of approximately 223,000 km2. However, the available data on the diversity of fish caught by the region's industrial trawler fleet are limited to the commercially-valuable species. This lacuna in the data on the region's marine fish fauna is worrying, both for the management of stocks and the conservation of the local biodiversity. The present study was based on a comprehensive inventory of the teleost fishes captured by the industrial outrigger trawling operations off the North coast of Brazil. This inventory recorded 201 species belonging to 64 families and 20 orders, and revealed a unique fauna, characterized by 17 endemic species, and a mixture of estuarine-dependent and marine species, mainly associated with coral reefs. The Kernel density analysis indicated that the industrial trawling fleet operates within an important ecotone, which encompasses the transition zones of different fish communities found off the Brazilian North coast.(AU)


A costa Norte do Brasil é um dos pesqueiros de camarão mais importantes do mundo, com uma área total de aproximadamente 223.000 km2. No entanto, dados disponíveis sobre a diversidade de peixes capturados pela frota industrial de arrasto de portas na região são limitados às espécies com valor comercial. Essa lacuna no conhecimento sobre a fauna de peixes marinhos da região é preocupante, tanto para o manejo dos estoques quanto para a conservação da biodiversidade local. O presente estudo é baseado num inventário abrangente dos peixes teleósteos capturados por operações de arrasto de portas da frota industrial que opera na costa Norte do Brasil. Este inventário registrou 201 espécies pertencentes a 64 famílias e 20 ordens, e revelou uma fauna única, caracterizada por 17 espécies endêmicas, e uma mistura de espécies estuarino-dependentes e espécies marinhas, principalmente associadas a recifes de corais. A análise da densidade Kernel indicou que a frota industrial de arrasto de portas opera dentro de um importante ecótono, que abrange uma zona de transição de diferentes comunidades de peixes encontrados na costa Norte do Brasil.(AU)


Subject(s)
Animals , Biodiversity , Fishes/classification
9.
PLoS One ; 13(11): e0207853, 2018.
Article in English | MEDLINE | ID: mdl-30496244

ABSTRACT

BACKGROUND: Chlamydia trachomatis is the most prevalent bacterial sexually transmitted infection (STI) in the world. Approximately 80% of infected women are asymptomatic, although this infection can lead to serious complications in the female reproductive tract. Few data on Chlamydia infection are available in rural Amazonian communities. OBJECTIVES: To evaluate the prevalence of sexual C. trachomatis infection in women from Marajó Archipelago communities in the Amazon region of Brazil and to identify associated factors and genotypes. METHODS: We utilized amplification of the ompA gene by nested PCR. Positive samples were genotyped by sequencing. Study participants completed a questionnaire on social, epidemiological, and reproductive health variables. A Poisson regression was used to evaluate the degree of association of these variables with the infection. RESULTS: The sexual infection by C. trachomatis was observed in 4% (16/393) of the subjects, and was more often found in women aged ≤25 (14.3%; 95% CI = 2.83-35.47; p <0.001), and in women with a household income of less than one Brazilian monthly minimum wage (5.2%; 95% CI = 1.33-11.37; p = 0.014). The ompA gene was sequenced in 13 samples, revealing F genotypes (38.4%, n = 5), D (23%, n = 3), E (15.3%, n = 2), Ia (7.6%, N = 1), J (7.6%, n = 1) and B (7.6%, n = 1). CONCLUSIONS: We recorded a high prevalence of sexual infection by C. trachomatis in young and poor women from the interior of the Brazilian Amazon. This high prevalence and the frequencies of the main genotypes were similar to those found in major Brazilian urban centers. Our results reinforce the importance of the screening of this neglected infection, and the prevention of later sequelae in young women from rural and urban areas of Brazil.


Subject(s)
Chlamydia Infections/epidemiology , Chlamydia trachomatis/physiology , Islands/epidemiology , Adolescent , Adult , Aged , Brazil/epidemiology , Chlamydia trachomatis/genetics , Female , Humans , Middle Aged , Prevalence , Reproductive Health , Risk Factors , Sexual Behavior , Young Adult
10.
Genet Mol Biol ; 41(3): 699-712, 2018.
Article in English | MEDLINE | ID: mdl-30235394

ABSTRACT

Capuchin monkeys are currently represented by four species of Cebus and eight of Sapajus. This group is taxonomically complex and several questions still need to be clarified. In the current study, using mtDNA markers and a larger sample representation than in previous studies, we seek to understand the phylogenetic relationships among the capuchin lineages and their historical biogeography. All 12 species of capuchins were analyzed for the mitochondrial Control Region and Cytochrome b to test two biogeographical hypotheses: "Reinvasion of the Amazon (ROA)" and "Sympatric Evolution (SEV)". The phylogenetic relationships among distinct lineages within genera is consistent with an evolutionary diversification pattern probably resulting from an explosive process of diversification and dispersal between 2.0 Ma and 3.0 Ma. Also, the analyses show that the ancestral capuchins were distributed in a wide area encompassing the Amazon and Atlantic Forest. Our results support the SEV hypothesis, showing that the current syntopic distribution of Cebus and Sapajus can be explained by a sympatric speciation event in the Amazon. We also indicate that the recently proposed species taxonomy of Cebus is not supported, and that S. cay and S. macrocephalus are a junior synonym of S. apella.

11.
Virol J ; 15(1): 80, 2018 05 02.
Article in English | MEDLINE | ID: mdl-29716616

ABSTRACT

BACKGROUND: The human T-lymphotropic virus type 1 (HTLV-1) affects 2-5 million people worldwide, and is associated with a number of degenerative and infectious diseases. The Envelope glycoproteins (gp) are highly conserved among the different HTLV-1 isolates, although nucleotide substitutions in the region that codifies these proteins may influence both the infectivity and the replication of the virus. The gp46 gene has functional domains which have been associated with the inhibition of the formation of the syncytium, cell-cell transmission, and the production of antibodies. The present study investigated the genetic stability of the gp46 gene of HTLV-1 in an endemic region of Brazilian Amazonia. METHODS: Index case (IC - a sample of a given family group) carriers of HTLV-1 were investigated in the metropolitan region of Belém (Pará, Brazil) between January 2010 (registered retrospectively) and December 2015. The sequences that codify the gp46 were amplified by PCR, purified and sequenced (MF084788-MF084825). The gene was characterized using bioinformatics and Bayesian Inference. RESULTS: The 40 patients analyzed had a mean age of 45.2 years and 70% presented some type of symptom, with a predominance of pain and sensitivity, dysautonomia, and motor disorders. All patients presented the aA (Transcontinental Cosmopolitan) genotype, with an extremely low mutation rate, which is characteristic of the codifying region (aA - 1.83 × 10-4 mutations per site per year). The gp46 gene had a nucleotide diversity of between 0.00% and 2.0%. Amino acid mutations were present in 66.6% of the samples of individuals with signs/symptoms or diseases associated with HTLV-1 (p = 0.0091). Of the three most frequent mutations, the previously undescribed N93D mutant was invariably associated with symptomatic cases. CONCLUSIONS: The aA HTLV-1 subtype is predominant in the metropolitan region of Belém and presented a high degree of genetic stability in the codifying region. The rare N93D amino acid mutation may be associated with the clinical manifestations of this viral infection. IMPORTANCE: Little is known of the phylogeny of HTLV-1 in the endemic region of Brazilian Amazonia, and few complete gene sequences are available for the gp46 glycoprotein from the local population. The nucleotide sequences of the viral gp46 gene recorded in the present study confirmed the genetic stability of the region, and pointed to a homogeneous viral group, with local geographic characteristics. Further research will be necessary to more fully understand the molecular diversity of this protein, given the potential of this codifying region as a model for an effective HTLV-1 vaccine. The identification of a rare mutation (N93D), present only in symptomatic patients, should also be investigated further as a potential clinical marker. TRIAL REGISTRATION: ISRCTN 12345678, registered 28 September 2014.


Subject(s)
Endemic Diseases , Gene Products, env/genetics , HTLV-I Infections/epidemiology , Human T-lymphotropic virus 1/genetics , Mutation , Pain/epidemiology , Primary Dysautonomias/epidemiology , Retroviridae Proteins, Oncogenic/genetics , Adult , Amino Acid Substitution , Base Sequence , Bayes Theorem , Brazil/epidemiology , Computational Biology , Female , Gene Expression , Genotype , HTLV-I Infections/diagnosis , HTLV-I Infections/physiopathology , HTLV-I Infections/virology , Heterozygote , Human T-lymphotropic virus 1/isolation & purification , Human T-lymphotropic virus 1/pathogenicity , Humans , Male , Middle Aged , Pain/diagnosis , Pain/physiopathology , Pain/virology , Primary Dysautonomias/diagnosis , Primary Dysautonomias/physiopathology , Primary Dysautonomias/virology , Protein Domains , Retrospective Studies , Sequence Analysis, DNA
12.
Mol Phylogenet Evol ; 124: 10-15, 2018 07.
Article in English | MEDLINE | ID: mdl-29505826

ABSTRACT

The titi monkeys belong to a genus of New World primates endemic to South America, which were recently reclassified in three genera (Cheracebus, Plecturocebus and Callicebus). The genus Callicebus, which currently includes five species, is endemic to eastern Brazil, occurring in the Caatinga, Savanna, and Atlantic Forest biomes. In the present study, we investigated the validity of these species and inferred their phylogenetic relationships, divergence times, and biogeographic patterns based on the molecular analysis of a concatenated sequence of 11 mitochondrial and nuclear DNA markers, derived from 13 specimens. We ran Maximum Likelihood (ML) and Bayesian Inference (BI) analyses, and estimated genetic distances, divergence times. Ancestral areas were estimated on BioGeoBears. Our results suggest that at about twelve million years ago, the ancestor of all titi monkeys inhabited a wide area that extended from the Amazon forest to the South of the Atlantic forest. A first vicariant event originated Cheracebus in the West of the Amazon and the ancestor of Callicebus and Plectorocebus which, later were separated by a second one. The diversification of Callicebus occurred during the Plio-Pleistocene (beginning at 5 Ma) probably influenced by climatic fluctuations and geological events. Therefore, the results of the present work confirmed the existence of five species that currently inhabit forested areas under increasing threat from human activities. Thus, a reliable diagnosis of the taxonomic status of species living in endangered environments is extremely important for the development of conservation measures.


Subject(s)
Phylogeny , Phylogeography , Pitheciidae/classification , Animals , Bayes Theorem , Brazil , Humans , Likelihood Functions , Species Specificity , Time Factors
13.
PLoS One ; 13(3): e0194184, 2018.
Article in English | MEDLINE | ID: mdl-29558516

ABSTRACT

The Human T-cell Lymphotropic Virus (HTLV-1) is a Deltaretrovírus that was first isolated in the 1970s, and associated with Adult T-cell Leucemia-Lymphoma (ATLL), and subsequently to Tropical Spastic Paraparesis-Myelopathy (TSP/HAM). The genetic diversity of the virus varies among geographic regions, although its mutation rate is very low (approximately 1% per thousand years) in comparison with other viruses. The present study determined the genetic diversity of HTLV-1 in the metropolitan region of Belém, in northern Brazil. Blood samples were obtained from patients at the UFPA Tropical Medicine Nucleus between January 2010 and December 2013. The DNA was extracted and the PX region of the HTLV was amplified using nested PCR. The positive samples were then digested using the Taq1 enzyme for the identification and differentiation of the HTLV-1 and HTLV-2. The 5'LTR region of the positive HTLV-1 samples were amplified by nested PCR, and then sequenced genetically. The phylogenetic analysis of the samples was based on the maximum likelihood method and the evolutionary profile was analyzed by the Bayesian approach. Overall, 78 samples tested positive for HTLV-1, and 44 were analyzed here. The aA (cosmopolitan-transcontinental) subtype was recorded in all the samples. The following evolutionary rates were recorded for the different subtypes-a: 2.10-3, b: 2.69. 10-2, c: 6.23. 10-2, d: 3.08. 10-2, e: 6. 10-2, f: 1.78. 10-3, g: 2.2. 10-2 mutations per site per year. The positive HTLV-1 samples tested in the present study were characterized by their low genetic diversity and high degree of stability.


Subject(s)
Genetic Variation , Human T-lymphotropic virus 1/genetics , Leukemia-Lymphoma, Adult T-Cell/genetics , Terminal Repeat Sequences , Adult , Brazil/epidemiology , Female , Humans , Leukemia-Lymphoma, Adult T-Cell/enzymology , Male
14.
Primates ; 58(2): 343-352, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28168329

ABSTRACT

Identifying the factors that determine local extinction of populations is crucial to ensure species conservation. Forest-dwelling primates are especially vulnerable to habitat fragmentation, although few studies have provided systematic evidence of local extinctions. Over an 11-year period, approximately 100 remnant populations of the endangered Coimbra Filho's titi monkey (Callicebus coimbrai) have been found within the geographic range of the species in Bahia and Sergipe, Northeast Brazil. During the present study, extinction of 13 of these populations was recorded through intensive surveys. These extinctions were detected from evidence of intensive logging and clear-cutting, interviews with local residents and systematic searches of the sites where occurrence of the species had been confirmed in previous surveys. These local extinctions represent approximately 10 % of the known populations of C. coimbrai and up to 28.3 % of the area occupied by the species. Comparison of the vegetation structure in fragments where extinction was recorded and where the species still occurs indicated that sparser understorey may be a correlate of extinction, combined with the fact that extinctions occurred within fragments characterised by relatively high levels of anthropogenic disturbance. These findings reinforce the Endangered status of the species and the urgent need for intensification of conservation measures within the most impacted areas of the geographic distribution of C. coimbrai.


Subject(s)
Extinction, Biological , Pitheciidae/physiology , Animals , Brazil , Conservation of Natural Resources , Population Density
15.
Am J Primatol ; 79(5)2017 05.
Article in English | MEDLINE | ID: mdl-28103408

ABSTRACT

Conservation practices in the tropics often rely on the data available for a few, better-known species and the adoption of an appropriate spatial scale. By defining a set of landscape units that account for critical aspects of the focal species, the information available on these conservation targets can support regional conservation policies. Here, we define and classify adjacent landscapes, termed planning units, to orientate management decisions within and among these landscapes, which are occupied by an endangered flagship primate species (Coimbra-Filho's titi monkey, Callicebus coimbrai) from eastern Brazil. We use landscape boundaries (highways and river systems), and a high-resolution map of forest remnants to identify continuous and manageable landscapes. We employed functional landscape metrics based on the species' dispersal ability and home range size to characterize and classify these landscapes. We classified planning units by scoring them according to a suite of selected metrics through a Principal Component Analysis. We propose 31 planning units, containing one to six C. coimbrai populations, most with low values of habitat availability, functional connectivity and carrying capacity, and a high degree of degradation. Due to this poor landscape configuration, basic management practices are recommendable. However, additional aspects of the landscapes and the populations they contain (e.g., matrix type and genetic variability) should improve the scheme, which will require a closer integration of research aims with socio-political strategies. Even so, our scheme should prove useful for the combination of information on conservation targets (i.e., focal species) with management strategies on an administrative scale.


Subject(s)
Conservation of Natural Resources , Endangered Species , Pitheciidae , Animals , Brazil , Decision Making , Geographic Mapping
16.
Revista Brasileira de Zoociências (Online) ; 18(1): 53-66, jan. 2017. map, tab, graf
Article in English | VETINDEX | ID: biblio-1494663

ABSTRACT

The RPPN Carnijó (08° 07’ 07” S, 35° 05’ 32” N) is a 25 hectare fragment of Atlantic Forest located in the municipality of Moreno, Pernambuco. Bats were sampled at this site during a total of 19 months between 2006 and 2008. Four mist-nets were set for six hours each night along trails, the forest edge, natural clearings, and over watercourses, while roosts were located during daytime searches. A total of 518 specimens were captured during 43 nights, representing 20 species in 16 genera. Total species richness was estimated to be 25.7 ± 2.0, and diversity was H’ = 2.07. The family Phyllostomidae predominated, with 98% (N = 509) of the specimens captured. The species recorded represent 28% of the known chiropteran fauna of the state of Pernambuco. The results indicate that the reserve may play a fundamentally important role in the maintenance of local biodiversity by acting as a “stepping stone” linking the larger fragments within the local landscape.


A RPPN Carnijó (08° 07’ 07” S, 35° 05’ 32” N) é um fragmento de Mata Atlântica de 25 hectares localizado no município de Moreno, Pernambuco. Os morcegos foram amostrados durante 19 meses, entre 2006 e 2008. Quatro redes de neblina foram armadas por seis horas em cada noite em trilhas no interior da área florestada, na borda, em clareiras naturais e próximas a córregos e alagados. Buscas por abrigos foram realizadas durante o dia. Um total de 518 espécimes foram capturados em 43 noites de amostragem, representando 20 espécies de 16 gêneros. A riqueza foi estimada em 25,7 ± 2,0 e a diversidade foi H’ = 2,07. A família Phyllostomidae predominou com 98% (N = 509) das espécies capturadas. As espécies registradas no presente estudo representam 28% da quiropterofauna conhecida para o estado de Pernambuco. Os resultados indicam que a RPPN Carnijó pode desempenhar um importante papel na manutenção da biodiversidade local atuando como “trampolim ecológico” na paisagem local.


Subject(s)
Animals , Biota , Chiroptera , Biodiversity , Forests , Animal Population Groups
17.
R. bras. Zoo. ; 18(1): 53-66, jan. 2017. mapas, tab, graf
Article in English | VETINDEX | ID: vti-16371

ABSTRACT

The RPPN Carnijó (08° 07 07” S, 35° 05 32” N) is a 25 hectare fragment of Atlantic Forest located in the municipality of Moreno, Pernambuco. Bats were sampled at this site during a total of 19 months between 2006 and 2008. Four mist-nets were set for six hours each night along trails, the forest edge, natural clearings, and over watercourses, while roosts were located during daytime searches. A total of 518 specimens were captured during 43 nights, representing 20 species in 16 genera. Total species richness was estimated to be 25.7 ± 2.0, and diversity was H = 2.07. The family Phyllostomidae predominated, with 98% (N = 509) of the specimens captured. The species recorded represent 28% of the known chiropteran fauna of the state of Pernambuco. The results indicate that the reserve may play a fundamentally important role in the maintenance of local biodiversity by acting as a “stepping stone” linking the larger fragments within the local landscape.(AU)


A RPPN Carnijó (08° 07 07” S, 35° 05 32” N) é um fragmento de Mata Atlântica de 25 hectares localizado no município de Moreno, Pernambuco. Os morcegos foram amostrados durante 19 meses, entre 2006 e 2008. Quatro redes de neblina foram armadas por seis horas em cada noite em trilhas no interior da área florestada, na borda, em clareiras naturais e próximas a córregos e alagados. Buscas por abrigos foram realizadas durante o dia. Um total de 518 espécimes foram capturados em 43 noites de amostragem, representando 20 espécies de 16 gêneros. A riqueza foi estimada em 25,7 ± 2,0 e a diversidade foi H = 2,07. A família Phyllostomidae predominou com 98% (N = 509) das espécies capturadas. As espécies registradas no presente estudo representam 28% da quiropterofauna conhecida para o estado de Pernambuco. Os resultados indicam que a RPPN Carnijó pode desempenhar um importante papel na manutenção da biodiversidade local atuando como “trampolim ecológico” na paisagem local.(AU)


Subject(s)
Animals , Chiroptera , Biota , Biodiversity , Animal Population Groups , Forests
18.
ScientificWorldJournal ; 2017: 8064126, 2017.
Article in English | MEDLINE | ID: mdl-29359177

ABSTRACT

The exploitation of resources by closely related species with similar niches may be mediated by differences in activity patterns, which may vary in nycthemeral scale and seasonal scale. Piranhas Serrasalmus gibbus and Serrasalmus rhombeus are Neotropical predators that occur sympatrically in many environments of the Amazon basin. To evaluate the strategies adopted by these two species in a restricted environment (a reservoir), nycthemeral and seasonal samples were made, identifying the composition of the diet and their activity patterns. A total of 402 specimens were collected: 341 S. gibbus and 61 S. rhombeus. Both species fed themselves primarily on fish, with some seasonal variation being found in S. gibbus during the flood season, when plant material was consumed. There was considerable temporal overlap in the foraging behavior of the two species, although S. rhombeus presented a bimodal pattern of abundance over the 24-hour cycle. S. rhombeus was more active during the nighttime, between dusk and early morning, whereas S. gibbus was active throughout the nycthemeral cycle. These findings indicate low levels of competition between the two species, which allowed for a considerable overlap in nighttime foraging, following distinct nycthemeral patterns of foraging activity and allowing their coexistence.


Subject(s)
Characiformes/physiology , Feeding Behavior , Activity Cycles , Animals , Characiformes/classification , Ecosystem , Predatory Behavior
19.
Pap. avulsos zool ; 56(6): 63-68, Jan.-Dec.2016. tab
Article in English | VETINDEX | ID: biblio-1486970

ABSTRACT

This study reports the occurrence of bat species and their ectoparasites to a mangrove area of the State of Pernambuco. The bats were captured for seven consecutive months in four mangrove areas. Sampling occurred for 12 consecutive hours each night collection where mist-nets were used. Eighty-three bats of 14 species were captured. Of these, only 53 Phyllostomidae family bats found themselves parasited. We identified seven species of flies of the family Streblidae parasitizing bats. The diversity of bats is H = 2.19 for all areas sampled and the prevalence of streblid ranged from 8.3 to 66,6. The mean intensity ranged from one and five. It is reported for the first time the occurrence of Lophostoma brasiliense to the mangrove ecosystem, besides two species of streblid to Pernambuco.


O presente artigo reporta a ocorrência de espécies de morcegos e seus ectoparasitos associados em uma área de manguezal do Estado de Pernambuco. Os morcegos foram capturados por sete meses consecutivos em quatro áreas. As capturas ocorreram por 12 horas em cada noite com auxílio de redes de neblinas. Foram capturados 83 espécimes de morcegos de 14 espécies. Destes, 53 indivíduos da família Phyllostomidae estavam parasitados. Nós identificamos sete espécies de moscas da família Streblidae parasitando morcegos. A diversidade de morcegos foi H’ = 2.19 para todas as áreas amostradas e a prevalência de estrebídeos variou de 8.3 a 66.6. A intensidade média variou de um a cinco ectoparasitos. É reportada pela primeira vez a ocorrência de Lophostoma brasiliense para o ecossistema manguezal, além de duas espécies de estrebídeos para Pernambuco.


Subject(s)
Animals , Diptera , Ectoparasitic Infestations , Chiroptera , Wetlands , Brazil
20.
Pap. avulsos zool ; 56(6)Jan.-Dec.2016.
Article in English | LILACS-Express | VETINDEX | ID: biblio-1486971

ABSTRACT

ABSTRACT This study reports the occurrence of bat species and their ectoparasites to a mangrove area of the State of Pernambuco. The bats were captured for seven consecutive months in four mangrove areas. Sampling occurred for 12 consecutive hours each night collection where mist-nets were used. Eighty-three bats of 14 species were captured. Of these, only 53 Phyllostomidae family bats found themselves parasited. We identified seven species of flies of the family Streblidae parasitizing bats. The diversity of bats is H = 2.19 for all areas sampled and the prevalence of streblid ranged from 8.3 to 66,6. The mean intensity ranged from one and five. It is reported for the first time the occurrence of Lophostoma brasiliense to the mangrove ecosystem, besides two species of streblid to Pernambuco.


RESUMO O presente artigo reporta a ocorrência de espécies de morcegos e seus ectoparasitos associados em uma área de manguezal do Estado de Pernambuco. Os morcegos foram capturados por sete meses consecutivos em quatro áreas. As capturas ocorreram por 12 horas em cada noite com auxílio de redes de neblinas. Foram capturados 83 espécimes de morcegos de 14 espécies. Destes, 53 indivíduos da família Phyllostomidae estavam parasitados. Nós identificamos sete espécies de moscas da família Streblidae parasitando morcegos. A diversidade de morcegos foi H = 2.19 para todas as áreas amostradas e a prevalência de estrebídeos variou de 8.3 a 66.6. A intensidade média variou de um a cinco ectoparasitos. É reportada pela primeira vez a ocorrência de Lophostoma brasiliense para o ecossistema manguezal, além de duas espécies de estrebídeos para Pernambuco.

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