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2.
Genet Mol Res ; 16(2)2017 May 25.
Article in English | MEDLINE | ID: mdl-28549205

ABSTRACT

We assessed the impact of genetic divergence and the ability to combine corn hybrids used for the production of silage on the agronomic and bromatological traits of silage quality. We evaluated 18 corn hybrids used as genitors in a circulant diallel scheme in which each genitor hybrid participated in 9 hybrid combinations, and evaluated 100 treatments [18 genitor hybrids, 81 diallelic hybrids, and a commercial check hybrid (DKB330)] in a triple lattice 10 x 10 experimental design in two environments in Brazil. Genetic variability was adequate among the corn silage hybrids, and we can recommend the use of genitors 2B688 and P30B39 for the formation of a base population for intrapopulational breeding. The P30P34 hybrid is the best for intrapopulational breeding when aiming for silage with high protein content, low fiber content, and higher in vitro digestibility. Interpopulational breeding directed at improving silage digestibility can use a combination of genitors P30P34 and AS1572, but AS1572 and P30K64 are the most recommended. Hybrids 2B688, P30P34, and SG6015 are considered the most genetically distant of the others hybrids, and have desirable combining potential; therefore, they are important genitors for the formation of new segregated populations for improving corn silage.


Subject(s)
Genetic Variation , Hybridization, Genetic , Silage/standards , Zea mays/genetics , Plant Breeding/methods , Quantitative Trait, Heritable
3.
Genet Mol Res ; 15(2)2016 May 13.
Article in English | MEDLINE | ID: mdl-27323023

ABSTRACT

Heterosis is a highly relevant phenomenon in plant breeding. This condition is usually established in hybrids derived from crosses of highly divergent parents. The success of a breeder in obtaining heterosis is directly related to the correct identification of genetically contrasting parents. Currently, the diallel cross is the most commonly used methodology to detect contrasting parents; however, it is a time- and cost-consuming procedure. Therefore, new tools capable of performing this task quickly and accurately are required. Thus, the purpose of this study was to estimate the genetic divergence in industrial tomato lines, based on agronomic traits, and to compare with estimates obtained using inter-simple sequence repeat (ISSR) molecular markers. The genetic divergence among 10 industrial tomato lines, based on nine morphological characters and 12 ISSR primers was analyzed. For data analysis, Pearson and Spearman correlation coefficients were calculated between the genetic dissimilarity measures estimated by Mahalanobis distance and Jaccard's coefficient of genetic dissimilarity from the heterosis estimates, combining ability, and means of important traits of industrial tomato. The ISSR markers efficiently detected contrasting parents for hybrid production in tomato. Parent RVTD-08 was indicated as the most divergent, both by molecular and morphological markers, that positively contributed to increased heterosis and by the specific combining ability in the crosses in which it participated. The genetic dissimilarity estimated by ISSR molecular markers aided the identification of the best hybrids of the experiment in terms of total fruit yield, pulp yield, and soluble solids content.


Subject(s)
Plant Breeding/methods , Solanum lycopersicum/genetics , Crops, Agricultural/genetics , Crosses, Genetic , Fruit/genetics , Genetic Markers/genetics , Genetic Variation , Hybrid Vigor , Hybridization, Genetic , Microsatellite Repeats , Phenotype , Random Amplified Polymorphic DNA Technique
4.
J Comp Pathol ; 149(2-3): 298-302, 2013.
Article in English | MEDLINE | ID: mdl-23664426

ABSTRACT

Thrombopoietin (THPO) is the major cytokine that regulates megakaryopoiesis and platelet production. Several human and murine studies have demonstrated that THPO is primarily synthesized in the liver, but the kidney, spleen and bone marrow are also sites of expression. The aim of this study was to determine THPO mRNA levels in a range of canine tissues by reverse transcriptase quantitative polymerase chain reaction (RT-qPCR). Samples of bone marrow (n = 5), liver (n = 10), lung (n = 10), renal cortex (n = 10), renal medulla (n = 5) and spleen (n = 10) were obtained from 10 healthy, hound-cross dogs aged 6-8 months. The highest THPO mRNA levels were found in the liver, followed by the bone marrow, spleen, lung and kidney. There was a 13-fold difference in expression between liver and kidney. The bone marrow showed high levels of THPO mRNA in the absence of disease. The liver and bone marrow are likely to be the major sites of THPO production in the dog.


Subject(s)
RNA, Messenger/analysis , Thrombopoietin/biosynthesis , Thrombopoietin/genetics , Transcriptome , Animals , Bone Marrow/metabolism , Dogs , Liver/metabolism , Reverse Transcriptase Polymerase Chain Reaction
5.
Genet Mol Res ; 12(1): 270-81, 2013 Feb 04.
Article in English | MEDLINE | ID: mdl-23408414

ABSTRACT

Outside its centers of origin, garlic propagates only asexually. Since asexual reproduction leads to the absence of meiotic recombination, the main garlic cultivars available for cultivation have arisen from the accumulation of somatic mutations in early cultivars. Thus, it is common for a single clone to have different names in different regions. This study aimed to evaluate the genetic diversity of 20 garlic cultivars by using morphological characters and amplified fragment length polymorphism (AFLP) markers to identify possible duplicate cultivars. We assessed 28 morphological characters related to the leaves, bulbs, and bulbils of the garlic plant and divided them into two categories: quantitative and qualitative (14 characters each). For molecular marker-based analysis, we used three AFLP primer combinations. Genetic divergence was calculated using the Jaccard coefficient; the cultivars were grouped using unweighted pair-group mean analysis. The average genetic divergence detected using the morphological characters was 2.30 (range, 0.45-4.70). Plant height and coat adhesion exhibited the highest divergence among the cultivars. The average genetic diversity based on AFLP data was 43% (range, 0-79%). Dendrograms derived from both techniques divided the cultivars into two groups: noble and semi-noble. Together with the divergence within groups, the correlation between morphological and molecular data suggested that the cultivars in the noble group had greater phenotypic stability than those in the semi-noble group. Analysis of Jonas and Quitéria cultivars using these two techniques revealed only slight differences, suggesting that these cultivars may be clones or have a high degree of kinship.


Subject(s)
Garlic/genetics , Amplified Fragment Length Polymorphism Analysis/methods , Biomarkers , Brazil , Genetic Variation , Phenotype , Phylogeny , Polymorphism, Genetic
6.
Vet Immunol Immunopathol ; 156(3-4): 229-34, 2013 Dec 15.
Article in English | MEDLINE | ID: mdl-24422229

ABSTRACT

Cyclosporine is an immunosuppressive agent that inhibits T-cell function by decreasing production of cytokines such as interleukin-2 (IL-2) and interferon-γ(IFN-γ). In dogs, there is currently no reliable analytical method for determining effective cyclosporine dosages in individual patients. Our laboratory has developed a quantitative reverse transcriptase polymerase chain reaction (RT-qPCR) assay that measures IL-2 and IFN-γ gene expression, with the goal of quantifying immunosuppression in dogs treated with cyclosporine. This study focuses on analytical validation of our assay, and on the effects of sample storage conditions on cyclosporine-exposed samples. Heparinized whole blood collected from healthy adult dogs was exposed to a typical post-treatment blood concentration for cyclosporine(500 ng/mL) for 1 h, and then stored for 0, 24, and 48 h at both room temperature and 4 ◦C.The study was then repeated using a cyclosporine concentration of 75 ng/mL, with sample storage for 0, 24, and 48 h at 4 ◦C. Cytokine gene expression was measured using RT-qPCR,and assay efficiency and inter- and intra-assay variability were determined. Storage for upto 24 h at room temperature, and up to 48 h at 4 ◦C, did not significantly alter results compared to samples that were processed immediately. Validation studies showed our assay to be highly efficient and reproducible and robust enough to be feasible under standard practice submission conditions.


Subject(s)
Immunosuppressive Agents/pharmacology , Interferon-gamma/genetics , Interleukin-2/genetics , Reverse Transcriptase Polymerase Chain Reaction/methods , T-Lymphocytes/immunology , Animals , Dogs
7.
J Appl Microbiol ; 107(5): 1669-80, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19457040

ABSTRACT

AIMS: The aim of this work was to evaluate the antiviral activities of Baccharis dracunculifolia (extract and essential oil), propolis and some isolated compounds (caffeic and cinnamic acids) against poliovirus type 1 (PV1) replication in HEp-2 cells. METHOD: Three different protocols (pre-, simultaneous and post-treatments) were used to verify the effect of addition time of the variables on PV1 replication by crystal violet method and relative viral RNA quantification by real-time PCR for analysing in which step of virus replication the variables could interfere. CONCLUSIONS: Data revealed that the B. dracunculifolia showed the best antiviral activity percentage in the simultaneous treatment, as well as lower relative viral quantification by real-time PCR. Variables might block partially the viral entry within cells, affect the steps of viral cycle replication into cells, or lead to RNA degradation before the virus entry into cells or after their release to the supernatant. SIGNIFICANCE AND IMPACT OF THE STUDY: Baccharis dracunculifolia is the most important botanical source of the south-eastern Brazilian propolis, and its potential for the development of new phytotherapeutic medicines has been investigated. Propolis is commonly used for its antimicrobial and immunomodulatory activities. Nevertheless, B. dracunculifolia and propolis effects on PV1 have not been investigated yet.


Subject(s)
Antiviral Agents/pharmacology , Baccharis/chemistry , Poliovirus/drug effects , Poliovirus/growth & development , Propolis/pharmacology , Baccharis/physiology , Cell Line, Tumor/virology , Cell Survival , Gentian Violet , Humans , Plant Extracts/pharmacology , Plant Oils/pharmacology , Polymerase Chain Reaction/methods , RNA, Viral/analysis
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