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1.
J Agric Food Chem ; 72(4): 1849-1854, 2024 Jan 31.
Article in English | MEDLINE | ID: mdl-38291983

ABSTRACT

Oenology, behind the more visible social and convivial aspects associated with the consumption of wine and spirits, has great complexity due to the coexistence of countless different styles of artisanal products, linked to the diversity of places grapes are grown and wine is produced, and its global distribution. Premium wine is not a commodity. To scientifically support such complexity requires an extremely rigorous and diversified scientific expertise, capable of supporting the continuous improvement of processes and products that are developed, evaluated, and offered on international markets. Rigorous chemical and sensory analyses are essential to this continuous process of improvement, and for several decades now have regularly brought together a large community of researchers from multidisciplinary backgrounds to share, discuss, and harmonize their knowledge and experience of wines. The 12th edition of In Vino Analytica Scientia 2022 was held in Neustadt, Germany, in July 2022. The conference was attended by over 240 delegates, from 23 nationalities, who shared different aspects of wine and spirits research, with 9 key note lectures; 37 full talks; 36 short communications, and over 200 posters. This special issue is a collection of full papers from a selection of contributed oral presentations and posters presented at the conference.


Subject(s)
Vitis , Wine , Wine/analysis , Germany
2.
Food Chem ; 402: 134160, 2023 Feb 15.
Article in English | MEDLINE | ID: mdl-36194944

ABSTRACT

Bottling regular wines following aromatized wines on the same filling lines bears the risk of unintentional aroma carryover, which has led to accusations of illegal aromatization. Obeying guidelines of good manufacturing practice, aroma carryover with no sensory relevance shall be considered as a technical unavoidable transfer having no legal consequences. To detect sensory relevance, odor activity values greater than one are proposed. Odor detection thresholds (OTs) were determined in water, model wine, and white wine for three lactones, α-ionone, ethyl 2-methylbutanoate, trans-cinnamaldehyde, and eugenol. Using different matrices OTs varied by factors of 2 for α-ionone and up to 23000 for ethyl 2-methylbutanoate. For α-ionone, being most prone for carryover, the three times higher OT of consumers did not trigger any preference for the aromatized wines, but rejection at 300 µg/L. Assessing α-ionone spiked wines by descriptive analysis, significant changes in sensory attributes only occurred at concentrations 10 times above OT.


Subject(s)
Volatile Organic Compounds , Wine , Eugenol/analysis , Gas Chromatography-Mass Spectrometry , Lactones/analysis , Odorants/analysis , Volatile Organic Compounds/analysis , Water/analysis , Wine/analysis
3.
Molecules ; 27(17)2022 Aug 23.
Article in English | MEDLINE | ID: mdl-36080146

ABSTRACT

High-performance countercurrent chromatography (HPCCC) was used for the target-guided isolation of precursors of 1,1,6-trimethyl-1,2-dihydronaphthalene (TDN) from Riesling wine. In separated HPCCC fractions of an Amberlite® XAD®-2 extract obtained from a German Riesling, TDN-generating fractions were identified by the acid-catalyzed hydrolysis of the progenitors at pH 3.0 and subsequent HS-GC-MS/MS analysis. The presence of multiple TDN-generating precursors in Riesling wine could be confirmed. From polar HPCCC fractions (11-13 and 14-16), 3,4-dihydroxy-7,8-dihydro-ß-ionone 3-O-rutinoside and 3,4-dihydroxy-7,8-dihydro-ß-ionone 3-O-ß-d-glucopyranoside were isolated as major TDN-precursors at a sufficient amount for structure elucidation by NMR spectroscopic studies. In the medium polar HPCCC factions (27-35), enzymatic hydrolysis liberated the aglycones 3-hydroxy-ß-ionone and 3-hydroxy-TDN in minor amounts. In further less polar TDN-generation fractions (36-44 and 45-50), glycosidic progenitors were absent; instead, a minor TDN formation most likely from non-conjugated constituents was observed.


Subject(s)
Wine , Countercurrent Distribution , Naphthalenes/analysis , Tandem Mass Spectrometry , Wine/analysis
4.
J Agric Food Chem ; 69(38): 11382-11394, 2021 Sep 29.
Article in English | MEDLINE | ID: mdl-34533305

ABSTRACT

Aromatized wines and regular table wines are often filled on the same bottling line. Sealing polymers in the filling line absorb volatiles from aromatized wines and may migrate due to insufficient cleaning into the subsequently bottled regular wine. Unintentional carryover of volatiles may lead to accusation of illegal aromatization of wine. Absorption, cleaning efficacy, and migration of volatiles into ethylene propylene diene monomer rubber were investigated in a model system. Direct thermal desorption-gas chromatography-mass spectrometry analysis of seven aroma compounds monitored variation in the polymer (µg/g). Absorption of volatiles was mostly driven by their octanol/water partition coefficients. Cleaning of polymers removed 11 to 62% of the absorbed volatiles. Subsequent immersion of cleaned polymers into model wine revealed migration of 20 to 57% of the remaining volatiles. Sensory tests suggested the impact of transferred volatiles into subsequent model wine. For α-ionone, an odor activity value of 1.03 indicated a potential sensory impact.


Subject(s)
Volatile Organic Compounds , Wine , Alkenes , Ethylenes , Odorants/analysis , Polymers , Rubber , Volatile Organic Compounds/analysis , Wine/analysis
5.
Rev Sci Instrum ; 92(6): 063307, 2021 Jun 01.
Article in English | MEDLINE | ID: mdl-34243568

ABSTRACT

To test the applicability of self-powered detectors (SPDs) for radiation monitoring in fusion reactor blankets, several irradiation tests have been undertaken with the ad hoc designed Cr-SPD, which presents the novelty of using chromium as the emitter material. This detector was exposed to an intense 60Co gamma-ray source, and to the 14 MeV neutrons produced by the D-T fusion reaction. Detailed analyses of the measured signals have been done here using a Monte Carlo modeling technique. We describe the simulations of the fusion neutron and gamma tests of the Cr-SPD, and compare their results with the experimental ones. Keeping in view the difficulty in computational reproduction of the sophisticated nuclear-electrical phenomena behind low-level SPD signals, our model is found to perform well, giving correct electrical polarities and orders of magnitude of the signals, as well as valuable insights into their different components. Our experience has highlighted the deficits and the needed improvements for the traditional SPD simulation techniques for prompt signal analyses.

6.
J Agric Food Chem ; 68(19): 5283-5295, 2020 May 13.
Article in English | MEDLINE | ID: mdl-32323983

ABSTRACT

Oak barrels form an integral part of wine production, especially that of high-quality wines where they are implemented as fermentation and aging vessels. Insufficient cleaning and sanitization of barrels can result in microbial spoilage which may have a detrimental impact on wine quality. To date, no review has been published on the various sanitization methods for wine barrels. The objective of this review is to provide an overview of the sanitization methods used in wineries from conventional techniques like the use of sulfur dioxide and steam to alternative and new approaches using ozone and high-power ultrasound. The methods' efficacies are outlined in terms of their ability to eradicate spoilage microorganisms such as Brettanomyces and acetic or lactic acid bacteria. Furthermore, their advantages and drawbacks are described together with their influence on physicochemical properties of the wood. Finally, limitations in existing knowledge are discussed and areas that merit further research are identified.


Subject(s)
Disinfection/methods , Food Handling/instrumentation , Quercus/microbiology , Wine/analysis , Bacteria/drug effects , Bacteria/genetics , Bacteria/growth & development , Bacteria/isolation & purification , Disinfectants/pharmacology , Disinfection/instrumentation , Humans , Quercus/chemistry , Taste , Wood/chemistry , Wood/microbiology
7.
J Agric Food Chem ; 68(12): 3834-3849, 2020 Mar 25.
Article in English | MEDLINE | ID: mdl-32031374

ABSTRACT

The C13-norisoprenoid aroma compounds 1,1,6-trimethyl-1,2-dihydronaphthalene (TDN) and biosynthetically related vitispirane (VS) are important contributors to the varietal aroma of Riesling wines and are released from glycosidically bound carotenoid breakdown products during bottle aging. TDN is appreciated by numerous winemakers, particularly in aged Riesling wines. Higher levels of TDN, however, are perceived as a "petrol" off-flavor, which is expected to increase due to ongoing climate change. Wines produced from the same Riesling clone, which was grafted on six different rootstocks, varied significantly throughout two vintages in respect to their concentrations of free and bound TDN and VS as well as other volatiles. Over three vintages, the same compounds differed significantly among wines made from eight Riesling clones grafted on the same rootstock. Genetically determined loose grape clusters favored the formation of TDN and yielded wines of stronger sensory petrol intensity. Berry size, however, had no relevant impact on TDN and VS formation.


Subject(s)
Fruit/chemistry , Naphthalenes/analysis , Vitis/chemistry , Wine/analysis , Odorants/analysis , Volatile Organic Compounds/analysis
8.
J Agric Food Chem ; 67(22): 6414-6422, 2019 Jun 05.
Article in English | MEDLINE | ID: mdl-31088051

ABSTRACT

The C13-norisoprenoid aroma compounds 1,1,6-trimethyl-1,2-dihydronaphthalene (TDN) and isomeric 2,10,10-trimethyl-6-methylene-1-oxaspiro[4.5]dec-7-enes, so-called vitispiranes, are considered to be biosynthetically related. They occur at higher concentrations in bottle-aged Riesling wines especially and are important contributors to the varietal aroma of Riesling wines. Because of the variation of the quantitative methods and data reported in the literature, a redetermination of concentration levels for both free and total TDN and isomeric vitispiranes, especially in German Riesling wines, was performed using a stable-isotope-dilution assay (SIDA). For this purpose, a novel six-step synthetic route to TDN and deuterium-labeled TDN was developed. A standardized sample preparation for TDN and vitispiranes and a rapid acid-hydrolysis method at genuine wine-pH conditions for the conversion of the precursors into TDN and vitispiranes were also developed. Automated HS-SPME was applied to 250 wine samples from two wine competitions, and analysis was performed by gas chromatography-mass spectrometry with selected-ion monitoring (GC-SIM-MS) as well as selected-reaction monitoring (GC-SRM-MS).


Subject(s)
Deuterium/chemistry , Naphthalenes/chemistry , Norisoprenoids/chemistry , Wine/analysis , Gas Chromatography-Mass Spectrometry , Indicator Dilution Techniques , Isomerism , Naphthalenes/chemical synthesis , Vitis/chemistry
9.
Front Microbiol ; 10: 697, 2019.
Article in English | MEDLINE | ID: mdl-31024486

ABSTRACT

Although there is an extensive tradition of research into the microbes that underlie the winemaking process, much remains to be learnt. We combined the high-throughput sequencing (HTS) tools of metabarcoding and metagenomics, to characterize how microbial communities of Riesling musts sampled at four different vineyards, and their subsequent spontaneously fermented derivatives, vary. We specifically explored community variation relating to three points: (i) how microbial communities vary by vineyard; (ii) how community biodiversity changes during alcoholic fermentation; and (iii) how microbial community varies between musts that successfully complete alcoholic fermentation and those that become 'stuck' in the process. Our metabarcoding data showed a general influence of microbial composition at the vineyard level. Two of the vineyards (4 and 5) had strikingly a change in the differential abundance of Metschnikowia. We therefore additionally performed shotgun metagenomic sequencing on a subset of the samples to provide preliminary insights into the potential relevance of this observation, and used the data to both investigate functional potential and reconstruct draft genomes (bins). At these two vineyards, we also observed an increase in non-Saccharomycetaceae fungal functions, and a decrease in bacterial functions during the early fermentation stage. The binning results yielded 11 coherent bins, with both vineyards sharing the yeast bins Hanseniaspora and Saccharomyces. Read recruitment and functional analysis of this data revealed that during fermentation, a high abundance of Metschnikowia might serve as a biocontrol agent against bacteria, via a putative iron depletion pathway, and this in turn could help Saccharomyces dominate the fermentation. During alcoholic fermentation, we observed a general decrease in biodiversity in both the metabarcoding and metagenomic data. Unexpected Micrococcus behavior was observed in vineyard 4 according to metagenomic analyses based on reference-based read mapping. Analysis of open reading frames using these data showed an increase of functions assigned to class Actinobacteria in the end of fermentation. Therefore, we hypothesize that bacteria might sit-and-wait until Saccharomyces activity slows down. Complementary approaches to annotation instead of relying a single database provide more coherent information true species. Lastly, our metabarcoding data enabled us to identify a relationship between stuck fermentations and Starmerella abundance. Given that robust chemical analysis indicated that although the stuck samples contained residual glucose, all fructose had been consumed, we hypothesize that this was because fructophilic Starmerella, rather than Saccharomyces, dominated these fermentations. Overall, our results showcase the different ways in which metagenomic analyses can improve our understanding of the wine alcoholic fermentation process.

10.
Anal Chim Acta X ; 1: 100005, 2019 Mar.
Article in English | MEDLINE | ID: mdl-33117972

ABSTRACT

Non-targeted analysis is nowadays applied in many different domains of analytical chemistry such as metabolomics, environmental and food analysis. Conventional processing strategies for GC-MS data include baseline correction, feature detection, and retention time alignment before multivariate modeling. These techniques can be prone to errors and therefore time-consuming manual corrections are generally necessary. We introduce here a novel fully automated approach to non-targeted GC-MS data processing. This new approach avoids feature extraction and retention time alignment. Supervised machine learning on decomposed tensors of segmented chromatographic raw data signal is used to rank regions in the chromatograms contributing to differentiation between sample classes. The performance of this novel data analysis approach is demonstrated on three published datasets.

11.
Curr Opin Biotechnol ; 56: 172-178, 2019 04.
Article in English | MEDLINE | ID: mdl-30530242

ABSTRACT

The wine microbiome - that is the microbial communities associated with the fermentation of must, is one of the most important factors in transforming grapes to wine, including flavour and aroma. Recent developments in high throughput sequencing and other 'omics methodologies are rapidly changing the level and complexity of information that we are able to extract from the wine microbiome. This will significantly enhance not only our understanding of which microbes are present at the various stages of the grapevine growth and winemaking process, but also improve our understanding of the complex interactions between microbes, the substrate and environment, ultimately shaping wine production. In this perspective we describe the role and future potential of such techniques in wine production, and highlight the potential challenges that will be simultaneously faced.


Subject(s)
Genomics/methods , Wine , DNA Barcoding, Taxonomic , Microbiota
12.
Homeopatia Méx ; 86(707): 17-23, 2017. tab
Article in Spanish | LILACS, HomeoIndex Homeopathy, MOSAICO - Integrative health | ID: biblio-880105

ABSTRACT

Se presenta un caso de Encephalomyelitis disseminata a la toma y el análisis del caso de acuerdo con la metodología de Clemens von Boenninghausen, considerando también las particularidades de los síntomas "genio", de las polaridades de los síntomas y los avances hechos por Boenninghausen en el tratamiento de los miasmas crónicos.


Subject(s)
Humans , Homeopathic Anamnesis , Repertory, Boenninghausen , Encephalomyelitis
13.
J Agric Food Chem ; 64(36): 6879-87, 2016 Sep 14.
Article in English | MEDLINE | ID: mdl-27571332

ABSTRACT

The aim of this study was to identify the source of haze formation in red wine after the addition of carboxymethyl cellulose (CMC) and to characterize the dynamics of precipitation. Ninety commercial wines representing eight grape varieties were collected, tested with two commercial CMC products, and analyzed for susceptibility to haze formation. Seventy-four of these wines showed a precipitation within 14 days independent of the CMC product used. The precipitates of four representative samples were further analyzed for elemental composition (CHNS analysis) and solubility under different conditions to determine the nature of the solids. All of the precipitates were composed of approximately 50% proteins and 50% CMC and polyphenols. It was determined that the interactions between CMC and bovine serum albumin are pH dependent in wine-like model solution. Furthermore, it was found that the color loss associated with CMC additions required the presence of proteins and cannot be observed with CMC and anthocyanins alone.


Subject(s)
Anthocyanins/chemistry , Carboxymethylcellulose Sodium/chemistry , Food Analysis , Polyphenols/chemistry , Wine/analysis , Chemical Precipitation , Chromatography, High Pressure Liquid , Serum Albumin, Bovine/chemistry , Vitis/chemistry
14.
Anal Bioanal Chem ; 408(10): 2425-39, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26897381

ABSTRACT

Native concentrations and enantiomeric distribution of 1,2-propanediol in various wines were studied in order to evaluate its merits as a potential marker for aroma adulteration in wine. Heart-cut multidimensional gas chromatography coupled to mass spectrometry was applied to analyze 1,2-propanediol after salting-out of the polar phase, derivatization with phenyl boronic acid, and extraction with cyclohexane. The enantiomeric separation of the derivative was achieved with heptakis-(6-O-tert. butyl dimethylsilyl-2,3-di-O-acetyl)-ß-cyclodextrin as the chiral selector. In all authentic wines studied, 1,2-propanediol showed a high enantiomeric ratio in favor of the (R)-enantiomer, proving its potential as a marker for the adulteration with flavor extracts based on industrial 1,2-propandiol as solvent. Usually, concentrations varied between 15 and 100 mg/L. Higher values (up to 170 mg/L) were found in wines made with high amounts of dry berries. However, despite the higher concentrations of 1,2-propanediol in such wines, no apparent influence on the enantiomeric distribution could be detected. Graphical Abstract Detection of fraudulent aromatization of wines by enantiodifferentiation of 1,2-propanediol as its phenylboronate ester.


Subject(s)
Boronic Acids/chemistry , Gas Chromatography-Mass Spectrometry/methods , Propylene Glycol/analysis , Wine/analysis , Esters , Stereoisomerism
15.
Int J Syst Evol Microbiol ; 65(9): 2980-2985, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26025943

ABSTRACT

A novel purple sulfur bacterium, strain AX1YPE(T), was isolated from marine sediments sampled at 47 m depth in Callao Bay, Perú. Strain AX1YPE grew anaerobically, synthesizing bacteriochlorophyll a and carotenoid pigments of the spirilloxanthin series. Cells were Gram-stain-negative rods and actively motile by a polar flagellum. Strain AX1YPE was able to grow photolithoautotrophically with sulfide and thiosulfate as electron donors. This new phototrophic organism utilized ammonium salt, N2, urea and glutamate as nitrogen sources. Strain AX1YPE had a DNA base composition of 63.9 mol% G+C. Analysis of the 16S rRNA gene sequence indicated that strain AX1YPE clusters in a separate branch within the genus Allochromatium of the family Chromatiaceae. Strain AX1YPE showed 16S rRNA gene sequence similarities of 98.2% with Allochromatium vinosum DSM 180(T) and Allochromatium minutissimum DSM 1376(T), 98.1% with Allochromatium phaeobacterium JA144(T), 97.3% with Allochromatium renukae DSM 18713(T) and 96.8% with Allochromatium warmingiiDSM 173(T). DNA-DNA hybridization values to the type strains of its closest relatives, A. vinosum and A. minutissimum, were 59 and 64%, respectively. The predominant fatty acid of strain AX1YPE(T) was C18 : 1ω;7c and it notably possessed C20 : 1 as a minor component. PCR-based molecular typing (Box A1R and randomly amplified polymorphic DNA) produced a unique banding pattern for strain AX1YPE(T) in comparison with the type strains of A. vinosum and A. minutissimum. Based on data from this polyphasic taxonomic study, which also includes average nucleotide identity comparison of five concatenated housekeeping genes, strain AX1YPE(T) is considered to represent a novel species of the genus Allochromatium for which the name Allochromatiumhumboldtianum sp. nov. is proposed. The type strain is AX1YPE(T) ( = DSM 21881(T) = KCTC 15448(T)).


Subject(s)
Chromatiaceae/classification , Geologic Sediments/microbiology , Phylogeny , Bacterial Typing Techniques , Bacteriochlorophyll A/metabolism , Base Composition , Carotenoids/metabolism , Chromatiaceae/genetics , Chromatiaceae/isolation & purification , DNA, Bacterial/genetics , Fatty Acids/chemistry , Molecular Sequence Data , Nucleic Acid Hybridization , Peru , RNA, Ribosomal, 16S/genetics , Seawater/microbiology , Sequence Analysis, DNA
16.
Beilstein J Nanotechnol ; 5: 1441-9, 2014.
Article in English | MEDLINE | ID: mdl-25247126

ABSTRACT

A general concept for parallel near-field photochemical and radiation-induced chemical processes for the fabrication of nanopatterns of a self-assembled monolayer (SAM) of (3-aminopropyl)triethoxysilane (APTES) is explored with three different processes: 1) a near-field photochemical process by photochemical bleaching of a monomolecular layer of dye molecules chemically bound to an APTES SAM, 2) a chemical process induced by oxygen plasma etching as well as 3) a combined near-field UV-photochemical and ozone-induced chemical process, which is applied directly to an APTES SAM. All approaches employ a sandwich configuration of the surface-supported SAM, and a lithographic mask in form of gold nanostructures fabricated through colloidal sphere lithography (CL), which is either exposed to visible light, oxygen plasma or an UV-ozone atmosphere. The gold mask has the function to inhibit the photochemical reactions by highly localized near-field interactions between metal mask and SAM and to inhibit the radiation-induced chemical reactions by casting a highly localized shadow. The removal of the gold mask reveals the SAM nanopattern.

17.
Anal Chim Acta ; 732: 46-52, 2012 Jun 30.
Article in English | MEDLINE | ID: mdl-22688033

ABSTRACT

Bitterness in wine, especially in white wine, is a complex and sensitive topic as it is a persistent sensation with negative connotation by consumers. However, the molecular base for bitter taste in white wines is still widely unknown yet. At the same time studies dealing with bitterness have to cope with the temporal dynamics of bitter perception. The most common method to describe bitter taste is the static measurement amongst other attributes during a descriptive analysis. A less frequently applied method, the time-intensity analysis, evaluates the temporal gustatory changes focusing on bitterness alone. The most recently developed multidimensional approach of the temporal dominance of sensations method reveals the temporal dominance of bitter taste in relation to other attributes. In order to compare the results comprised with these different sensory methodologies, 13 commercial white wines were evaluated by the same panel. To facilitate a statistical comparison, parameters were extracted from bitterness curves obtained from time-intensity and temporal dominance of sensations analysis and were compared to bitter intensity as well as bitter persistency based on descriptive analysis. Analysis of variance differentiated significantly the wines regarding all measured bitterness parameters obtained from the three sensory techniques. Comparing the information of all sensory parameters by multiple factor analysis and correlation, each technique provided additional valuable information regarding the complex bitter perception in white wine.


Subject(s)
Taste , Wine/analysis , Adult , Ethanol/chemistry , Female , Fructose/chemistry , Humans , Male , Middle Aged , Perception , Taste Threshold
18.
Nanoscale ; 4(3): 885-9, 2012 Feb 07.
Article in English | MEDLINE | ID: mdl-22215242

ABSTRACT

This article considers the possibility to use tips, which are functionalised by Raman active molecules, as new Raman probes for near-field optics in such a way that the Raman spectrum can be recorded of such a tip. If the Raman spectrum of the probe molecules is sensitive to their immediate environment, the probe can be used to map a surface by its local influence on the Raman spectrum of the probe. This new concept may be very promising for the investigation of specific interactions at the nanoscale by an optical response. Examples of the sensitivity of such a probe to the local environment are presented as a basis for further development of such a probe.

19.
Int J Syst Evol Microbiol ; 62(Pt 3): 675-682, 2012 Mar.
Article in English | MEDLINE | ID: mdl-21551331

ABSTRACT

A Gram-staining-negative, aerobic to microaerophilic, rod-shaped, red-coloured bacterium, strain T4(T), was isolated from a freshwater pipe on Tenerife island. A polyphasic taxonomic study was performed in order to characterize the strain in detail. The isolate is surrounded by a slime capsule, occurs singly, in the form of short chains, or in aggregates, and exhibits catalase and oxidase activities. Growth was observed at 15-42 °C. Optimum growth occurred at pH 8 with mono- and disaccharides, followed by polysaccharides and deoxysaccharides, but the bacterium utilized only a restricted spectrum of alcohols, alditols, amides, amines, carboxylic acids and amino acids. Strain T4(T) tolerated concentrations of 0-4% (w/v) NaCl and contained MK-7 as predominant isoprenoid quinone as well as carotenoids, but lacked pigments of the flexirubin type. The predominant fatty acids were iso-C(15:0) (32.2%), summed feature 3 (C(16:1)ω6c and/or C(16:1)ω7c; 22.5%), and iso-C(17:0) 3-OH (7.9%). Major polar lipids were phosphatidylethanolamine, phospholipids, aminophospholipids and other lipids of unknown character. The DNA G+C content was approximately 41.8 mol%. The sequence of the 16S-rRNA gene assigned strain T4(T) to the CFB group, forming a coherent cluster with species of the genus Algoriphagus with the highest similarity of 98.8% to Algoriphagus aquatilis A8-7(T). DNA-DNA hybridization revealed 37.5% relatedness to strain A8-7(T). Based on morphological, physiological and molecular properties as well as on phylogenetic distinctiveness, strain T4(T) should be placed into the genus Algoriphagus as a novel species, for which the name Algoriphagus aquaeductus sp. nov. (type strain T4(T) =DSM 19759(T) =LMG 24398(T) =NCIMB 14399(T)) is proposed.


Subject(s)
Bacteroidetes/classification , Bacteroidetes/isolation & purification , Drinking Water/microbiology , Aerobiosis , Bacterial Capsules/metabolism , Bacterial Typing Techniques , Bacteroidetes/genetics , Bacteroidetes/physiology , Base Composition , Benzoquinones/analysis , Carbon/metabolism , Carotenoids/analysis , Catalase/metabolism , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Energy Metabolism , Fatty Acids/analysis , Hydrogen-Ion Concentration , Molecular Sequence Data , Nucleic Acid Hybridization , Oxidoreductases/metabolism , Phospholipids/analysis , Phylogeny , Pigments, Biological/metabolism , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sodium Chloride/metabolism , Temperature
20.
Syst Appl Microbiol ; 34(8): 590-4, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21885227

ABSTRACT

In this study, the taxonomic status of anoxygenic photosynthetic bacteria belonging to the genus Allochromatium is revisited. The inter- and intraspecies relationship of seven Allochromatium strains, including a set of well described type strains, were examined by DNA-DNA hybridization (DDH) and multilocus sequence analysis (MLSA) using segments of seven protein-coding genes. The re-sequencing of the 16S rRNA, the internal transcriber spacer (ITS), multi-gene analysis and DDH comparison indicated that both type strains Allochromatium vinosum DSM 180(T) and Allochromatium minutissimum DSM 1376(T) are closely related to each other forming an independent cluster together with the strains A. vinosum DSM 183 and DSM 1686. The internal comparison of members of this A. vinosum phylogroup showed values of DDH relatedness above 80% and concatenated sequence similarities (4744bp) above 98%. In contrast, the MLSA scheme has identified A. vinosum strain BH-2 as a separate lineage. Strain BH-2 was first classified as a member of the species A. vinosum based on DDH comparison. However, this strain showed the lowest similarity values of the 16S rRNA gene and concatenated sequences, as well as amino acid identity (AAI) when compared to other Allochromatium strains, suggesting that strain BH-2 may represent a new species.


Subject(s)
Bacterial Typing Techniques/methods , Chromatiaceae/classification , Chromatiaceae/genetics , Multilocus Sequence Typing/methods , Nucleic Acid Hybridization/methods , Bacterial Proteins/genetics , DNA, Bacterial/analysis , DNA, Bacterial/genetics , DNA, Bacterial/isolation & purification , DNA, Ribosomal Spacer/genetics , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics
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