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1.
J Biol Chem ; 273(21): 13264-72, 1998 May 22.
Article in English | MEDLINE | ID: mdl-9582371

ABSTRACT

An enzyme having the same L-cysteine desulfurization activity previously described for the NifS protein was purified from a strain of Azotobacter vinelandii deleted for the nifS gene. This protein was designated IscS to indicate its proposed role in iron-sulfur cluster assembly. Like NifS, IscS is a pyridoxal-phosphate containing homodimer. Information gained from microsequencing of oligopeptides obtained by tryptic digestion of purified IscS was used to design a strategy for isolation and DNA sequence analysis of a 7,886-base pair A. vinelandii genomic segment that includes the iscS gene. The iscS gene is contained within a gene cluster that includes homologs to nifU and another gene contained within the major nif cluster of A. vinelandii previously designated orf6. These genes have been designated iscU and iscA, respectively. Information available from complete genome sequences of Escherichia coli and Hemophilus influenzae reveals that they also encode iscSUA gene clusters. A wide conservation of iscSUA genes in nature and evidence that NifU and NifS participate in the mobilization of iron and sulfur for nitrogenase-specific iron-sulfur cluster formation suggest that the products of the iscSUA genes could play a general role in the formation or repair of iron-sulfur clusters. The proposal that IscS is involved in mobilization of sulfur for iron-sulfur cluster formation in A. vinelandii is supported by the presence of a cysE-like homolog in another gene cluster located immediately upstream from the one containing the iscSUA genes. O-Acetylserine synthase is the product of the cysE gene, and it catalyzes the rate-limiting step in cysteine biosynthesis. A similar cysE-like gene is also located within the nif gene cluster of A. vinelandii. The likely role of such cysE-like gene products is to increase the cysteine pool needed for iron-sulfur cluster formation. Another feature of the iscSUA gene cluster region from A. vinelandii is that E. coli genes previously designated as hscB, hscA, and fdx are located immediately downstream from, and are probably co-transcribed with, the iscSUA genes. The hscB, hscA, and fdx genes are also located adjacent to the iscSUA genes in both E. coli and H. influenzae. The E. coli hscA and hscB gene products have previously been shown to bear primary sequence identity when respectively compared with the dnaK and dnaJ gene products and have been proposed to be members of a heat-shock-cognate molecular chaperone system of unknown function. The close proximity and apparent co-expression of iscSUA and hscBA in A. vinelandii indicate that the proposed chaperone function of the hscBA gene products could be related to the maturation of iron-sulfur cluster-containing proteins. Attempts to place non-polar insertion mutations within either A. vinelandii iscS or hscA revealed that such mutations could not be stably maintained in the absence of the corresponding wild-type allele. These results reveal a very strong selective pressure against the maintenance of A. vinelandii iscS or hscA knock-out mutations and suggest that such mutations are either lethal or highly deleterious. In contrast to iscS or hscA, a strain having a polar insertion mutation within the cysE-like gene was readily isolated and could be stably maintained. These results show that the cysE-like gene located upstream from iscS is not essential for cell growth and that the cysE-like gene and the iscSUA-hscBA-fdx genes are contained within separate transcription units.


Subject(s)
Azotobacter vinelandii/genetics , Bacterial Proteins/genetics , Carbon-Sulfur Lyases/genetics , Escherichia coli Proteins , Ferredoxins/genetics , HSP70 Heat-Shock Proteins/genetics , Iron-Sulfur Proteins/genetics , Multigene Family , Amino Acid Sequence , Bacterial Proteins/isolation & purification , Carbon-Sulfur Lyases/chemistry , Escherichia coli/genetics , Genes, Bacterial , Molecular Sequence Data , Open Reading Frames , Sequence Homology, Amino Acid
2.
Biochemistry ; 36(39): 11811-20, 1997 Sep 30.
Article in English | MEDLINE | ID: mdl-9305972

ABSTRACT

The type and properties of the Fe-S cluster in recombinant Escherichia coli biotin synthase have been investigated in as-prepared and dithionite-reduced samples using the combination of UV-visible absorption and variable-temperature magnetic circular dichroism (VTMCD), EPR, and resonance Raman spectroscopies. The results confirm the presence of one S = 0 [2Fe-2S]2+ cluster in each subunit of the homodimer in aerobically purified samples, and the Fe-S stretching frequencies suggest incomplete cysteinyl-S coordination. However, absorption and resonance Raman studies show that anaerobic reduction with dithionite in the presence of 60% (v/v) ethylene glycol or glycerol results in near-stoichiometric conversion of two [2Fe-2S]2+ clusters to form one S = 0 [4Fe-4S]2+ cluster with complete cysteinyl-S coordination. The stoichiometry and ability to effect reductive cluster conversion without the addition of iron or sulfide suggest that the [4Fe-4S]2+ cluster is formed at the subunit interface via reductive dimerization of [2Fe-2S]2+ clusters. EPR and VTMCD studies indicate that more than 50% of the Fe is present as [4Fe-4S]+ clusters in samples treated with 60% (v/v) glycerol after prolonged dithionite reduction. The [4Fe-4S]+ cluster exists as a mixed spin system with S = 1/2 (g = 2. 044, 1.944, 1.914) and S = 3/2 (g = 5.6 resonance) ground states. Subunit-bridging [4Fe-4S]2+,+ clusters, that can undergo oxidative degradation to [2Fe-2S]2+ clusters during purification, are proposed to be a common feature of Fe-S enzymes that require S-adenosylmethionine and function by radical mechanisms involving the homolytic cleavage of C-H or C-C bonds, i.e., biotin synthase, anaerobic ribonucleotide reductase, pyruvate formate lyase, lysine 2, 3-aminomutase, and lipoic acid synthase. The most likely role for the [4Fe-4S]2+,+ cluster lies in initiating the radical mechanism by directly or indirectly facilitating reductive one-electron cleavage of S-adenosylmethionine to form methionine and the 5'-deoxyadenosyl radical. It is further suggested that oxidative cluster conversion to [2Fe-2S]2+ clusters may play a physiological role in these radical enzymes, by providing a method of regulating enzyme activity in response to oxidative stress, without irreversible cluster degradation.


Subject(s)
Escherichia coli/enzymology , Iron-Sulfur Proteins/chemistry , Sulfurtransferases/chemistry , Dithionite/metabolism , Electron Spin Resonance Spectroscopy , Iron-Sulfur Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Spectrophotometry, Ultraviolet , Spectrum Analysis, Raman , Sulfurtransferases/metabolism
4.
J Biol Chem ; 271(27): 16068-74, 1996 Jul 05.
Article in English | MEDLINE | ID: mdl-8663056

ABSTRACT

In this paper, I report the purification of a protein from Escherichia coli that is very similar in sequence, molecular weight, and the reactions it can catalyze to the protein encoded by the Azotobacter vinelandii nifS gene. This E. coli protein contains pyridoxal phosphate as a cofactor and catalyzes the removal of sulfur from cysteine to form alanine and S0. When dithiothreitol is present along with cysteine, the S0 formed is reduced to S2-. This protein has a reactive sulfhydryl group that is essential for activity. As isolated, this sulfhydryl group appears to be in a disulfide linkage with the sulfhydryl group from the phosphopantetheine moiety of the acyl carrier protein. The purified E. coli protein can mobilize the sulfur from cysteine and contribute it to the formation of a [4Fe-4S] cluster on the apoprotein of E. coli dihydroxy-acid dehydratase. A mechanism is proposed for the early stages of the synthesis of Fe-S clusters using this protein and sulfur in the S0 oxidation state.


Subject(s)
Azotobacter vinelandii/genetics , Azotobacter vinelandii/metabolism , Bacterial Proteins/metabolism , Escherichia coli/metabolism , Hydro-Lyases/metabolism , Iron-Sulfur Proteins/biosynthesis , Alanine/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Chromatography, Gel , Chromatography, Ion Exchange , Cysteine/metabolism , Disulfides , Genes, Bacterial , Haemophilus influenzae/metabolism , Kinetics , Macromolecular Substances , Molecular Sequence Data , Naphthalenesulfonates/pharmacology , Pantetheine/analogs & derivatives , Pantetheine/metabolism , Peptide Fragments/chemistry , Peptide Fragments/isolation & purification , Pyridoxal Phosphate/analysis , Pyridoxal Phosphate/metabolism , Sequence Homology, Amino Acid , Sulfhydryl Reagents/pharmacology
5.
J Biol Chem ; 271(27): 16053-67, 1996 Jul 05.
Article in English | MEDLINE | ID: mdl-8663055

ABSTRACT

The apoprotein of Escherichia coli dihydroxy-acid dehydratase, which contains a catalytically essential [4Fe-4S] cluster in its active form, has been used as a substrate to investigate Fe-S cluster synthesis. The inactive apoprotein could be reactivated in vitro by factors present in the crude extract of E. coli and to a much smaller extent in the presence of Fe3+, S2-, and dithiothreitol. This reactivation occurs as a result of Fe-S cluster synthesis. It is anticipated that the Fe-S cluster synthesis observed in crude extracts in vitro may involve some of the components that participate in Fe-S cluster synthesis in vivo. The origin of the sulfur used to form Fe-S clusters was investigated. Four enzymatic activities in the crude extract of E. coli were found that can provide sulfur for Fe-S cluster synthesis in vitro by mobilizing the sulfur from cysteine. The purification of the proteins responsible for three of these activities is reported in this paper. The three proteins have been identified as O-acetylserine sulfhydrylase A, O-acetylserine sulfhydrylase B, and beta-cystathionase. The rate and extent of sulfide mobilization from cysteine in the reaction catalyzed by O-acetylserine sulfhydrylases A and B depend on the presence of nucleophiles that can add to the aminoacrylate formed on the enzyme following the removal of sulfide from cysteine. A new amino acid is formed when the nucleophiles add to the aminoacrylate. Sulfur mobilization by beta-cystathionase does not require a nucleophile, and the reaction is a minor variation on the cleavage of beta-cystathionine, with pyruvate, ammonia, and sulfide being the products. Once sulfur is mobilized by these enzymes, its efficient use in Fe-S cluster synthesis seems to be affected by the presence of yet unidentified factors present in crude extract. In crude extract and partially purified preparations from E. coli where these factors are present, the rapidity with which Fe-S clusters are formed and the efficiency with which sulfur is used imply an orderly controlled formation of Fe-S clusters that is generally typified by enzymatic reactions.


Subject(s)
Cysteine Synthase/isolation & purification , Cysteine Synthase/metabolism , Escherichia coli/enzymology , Hydro-Lyases/biosynthesis , Iron-Sulfur Proteins/biosynthesis , Lyases/isolation & purification , Lyases/metabolism , Amino Acid Sequence , Apoenzymes/biosynthesis , Chromatography, Gel , Chromatography, Ion Exchange , Cysteine/metabolism , Cysteine Synthase/chemistry , Iron/metabolism , Isoenzymes/chemistry , Isoenzymes/isolation & purification , Isoenzymes/metabolism , Kinetics , Molecular Sequence Data , Molecular Weight , Radioisotope Dilution Technique , Sequence Homology, Amino Acid , Spectrophotometry , Substrate Specificity , Sulfur Radioisotopes
6.
Arch Biochem Biophys ; 326(1): 48-56, 1996 Feb 01.
Article in English | MEDLINE | ID: mdl-8579371

ABSTRACT

Biotin synthase catalyzes the chemically difficult final step in the biotin biosynthetic pathway and is encoded by the bioB gene in Escherichia coli. In the present work, we extend our characterization of this enzymatic reaction and the extensive set of factors required by it. A defined mixture of components that supports the biotin synthase reaction has been found. The mixture contains biotin synthase, flavodoxin, flavodoxin reductase, NADPH, Ado-Met, Fe, fructose-1,6-bisphosphate, cysteine, and dithiothreitol. Even though this defined mixture supports the biotin synthase reaction, and in that regard is an important step forward in the study of this enzyme, it is unlikely that it contains all the physiologically significant factors involved in the biotin synthase reaction since it supports as an upper limit the synthesis of only 2 mol of biotin per mole of biotin synthase monomer. Progress in our efforts to identify additional physiologically significant factors is also reported. First, we describe evidence that the fructose 1,6-bisphosphate in the defined reaction mixture is substituting for an unknown factor of considerably higher potency present in crude extracts. Second, we have found that a labile low-molecular-weight product of the 7,8-diaminopelargonic acid aminotransferase reaction stimulates the rate of biotin formation in the defined biotin synthase reaction mixture and can increase the final amount of biotin formed by threefold. This product seems to be derived from Ado-Met, which 7,8-diaminopelargonic acid aminotransferase uses as its amino donor. However, 5'-deoxy-5'-methylthioadenosine, the postulated breakdown product from the action of 7,8-diaminopelargonic acid aminotransferase on Ado-Met, cannot be the active material since it has no stimulatory effect when added to the biotin synthase reaction mixture. Third, with a defined reaction mixture in hand, [35S]cysteine and [35S]Ado-Met, two potential sulfur donors present in the defined reaction mixture, were tested separately as sulfur donors. No 35S was incorporated into newly formed biotin when either [35S]cysteine or [35S]Ado-Met was added to the defined biotin synthase reaction mixture.


Subject(s)
Escherichia coli/enzymology , Sulfur/metabolism , Sulfurtransferases/metabolism , Enzyme Activation , Flavodoxin/metabolism , Phosphorylation
7.
Arch Biochem Biophys ; 311(2): 509-16, 1994 Jun.
Article in English | MEDLINE | ID: mdl-8203917

ABSTRACT

The protein encoded by the fumA gene in Escherichia coli is shown herein to be a highly efficient and specific catalyst of the fumarase reaction. In an investigation of 21 substrate analogs, this protein only had substantial activity as a hydro-lyase on fumarate, malate, acetylene dicarboxylate, fluorofumarate, and 2(S),3(S)-tartrate. The kcat and kcat/Km for the hydration of fumarate by this protein are 3100 s-1 and 5 x 10(6) mol-1 s-1, respectively. It is likely that one physiological role of this protein is a catalyst of the fumarase reaction; therefore, it is appropriate to name it fumarase A. Fumarase A specifically removes the 3-pro-R in the dehydration of (2S)-malate. The product of the action of fumarase A on acetylene dicarboxylate, fluorofumarate and 2(S),3(S)-tartrate is oxalacetate. The nitronate form of 2-hydroxy-3-nitro-propionate is a potent inhibitor of fumarase A, implying that the enzyme forms an intermediate with an anion at C-3. No kinetic isotope effect was found with (2S,3R)-3-[2H]malate. The effects of pH on the kcat and kcat/Km for fumarate as a substrate show that the pKas of the groups involved in catalysis differ markedly from porcine fumarase. The possible roles of the proteins encoded by the three fumarase genes in E. coli are briefly discussed.


Subject(s)
Escherichia coli/enzymology , Intramolecular Oxidoreductases , Isomerases/metabolism , Animals , Escherichia coli/genetics , Fumarates/metabolism , Genes, Bacterial , Hydrogen-Ion Concentration , Isomerases/genetics , Isomerases/isolation & purification , Kinetics , Malates/metabolism , Molecular Structure , Substrate Specificity , Swine
8.
Biochemistry ; 33(12): 3625-31, 1994 Mar 29.
Article in English | MEDLINE | ID: mdl-8142361

ABSTRACT

We report here the first purification of the protein encoded by the Escherichia coli bioB gene. One species of this protein runs on native gels with an electrophoretic mobility typical of a protein with m = 82 kDa, suggesting the protein is a dimer (gene sequence predicts m = 38.7 kDa). There are two iron- and two acid-labile sulfur atoms per protein monomer. Solutions containing the protein are red and have an absorbance spectrum characteristic of proteins with [2Fe-2S] clusters. In its oxidized native state, the protein is EPR-silent. Upon addition of dithionite, the protein's UV-visible absorbance spectrum is very slowly bleached, and an EPR active species is produced that displays a signal at gavg = 1.95. All these results are consistent with this protein containing one [2Fe-2S] cluster per monomer. The EPR spin quantitation is only 5-10% of expected. Since this protein loses iron upon reduction with dithionite, the low-spin quantitation is probably due to cluster instability in the reduced state. Another species of the bioB gene products has also been purified which runs on native gels with an electrophoretic mobility typical of a protein with m = 104 kDa. This species appears to be a dimer with one [2Fe-2S] cluster per dimer. The 104-kDa protein can be converted to the 82-kDa protein upon incubation with Fe3+ and S2-. The bioB gene product we have isolated is active in the conversion of dethiobiotin to biotin in vitro in the presence of NADPH, AdoMet, Fe3+ or Fe2+, and additional unidentified factors from the crude extracts of E. coli. The Km for dethiobiotin in this reaction has been found to be 2 microM.


Subject(s)
Escherichia coli/genetics , Genes, Bacterial , Iron-Sulfur Proteins/chemistry , Sulfurtransferases/isolation & purification , Amino Acid Sequence , Biotin/analogs & derivatives , Biotin/metabolism , Dithionite/pharmacology , Electron Spin Resonance Spectroscopy , Escherichia coli/enzymology , Macromolecular Substances , Molecular Sequence Data , Molecular Weight , NADP/pharmacology , Oxidation-Reduction , Potassium Chloride/pharmacology , Spectrophotometry , Sulfurtransferases/chemistry , Sulfurtransferases/genetics
9.
Arch Biochem Biophys ; 309(1): 29-35, 1994 Feb 15.
Article in English | MEDLINE | ID: mdl-8117110

ABSTRACT

Biotin synthase catalyzes the insertion of a sulfur atom between two carbon atoms of dethiobiotin to form biotin in the last step of the biotin biosynthesis pathway. In Escherichia coli, biotin synthase is coded for by bioB gene. We report here cloning, sequencing, and initial functional characterization of the yeast gene for biotin synthase in Saccharomyces cerevisiae. We have named this gene BIO2. It consists of a 355-codon open reading frame near the ZUO1 gene. Analysis of the yeast protein encoded by the BIO2 gene reveals that it shares extensive homology with biotin synthases of E. coli and Bacillus sphaericus. The yeast and the two bacterial biotin synthase proteins have similar molecular weights, amino acid compositions, and hydropathies. The plasmid pUCBIO2 containing the yeast BIO2 gene completely complements E. coli bioB- and delta bio mutants and enables these mutants to grow on dethiobiotin. Although BIO2 is physically linked to ZUO1, which encodes the putative left-handed Z-DNA binding protein zuotin, it appears to be regulated independently from it. The yeast BIO2 and ZUO1 genes reside near ADE3 gene on chromosome VII. BIO2 is the first eukaryotic gene reported from the biotin biosynthetic pathway.


Subject(s)
Cloning, Molecular , Escherichia coli/enzymology , Saccharomyces cerevisiae/enzymology , Sequence Analysis , Sulfurtransferases/genetics , Amino Acid Sequence , Bacillus/enzymology , Base Sequence , Biotin/metabolism , Codon , Escherichia coli/genetics , Gene Transfer Techniques , Molecular Sequence Data , Molecular Weight , Open Reading Frames , Saccharomyces cerevisiae/genetics , Sequence Homology , Sulfurtransferases/chemistry
10.
J Biol Chem ; 268(34): 25547-52, 1993 Dec 05.
Article in English | MEDLINE | ID: mdl-8244991

ABSTRACT

The enzyme dihydroxy-acid dehydratase previously has been shown to be inactivated in vivo in Escherichia coli within minutes of exposure to hyperbaric O2. In this paper, we show its inactivation is due to the destruction of its catalytically active [4Fe-4S] cluster. The inactivation is not followed by an appreciable decrease in the amount of dihydroxy-acid dehydratase protein as determined by Western blots. Thus, the protein from the inactivated enzyme remains unproteolyzed in the cells. Dihydroxy-acid dehydratase activity recovers after the cells treated with hyperbaric O2 are returned to ambient oxygen. Since this recovery in activity is not accompanied by a significant increase in dihydroxy-acid dehydratase protein and is not prevented by chloramphenicol, it appears primarily to be due to reactivation of the previously inactivated enzyme. The reactivation occurs by reconstitution of the enzyme's Fe-S cluster. These results demonstrate that this enzyme can cycle between forms in which the Fe-S cluster is either present or absent. The facile ability to cycle between these two forms would be compatible with a regulatory role in addition to a catalytic role for this enzyme.


Subject(s)
Escherichia coli/enzymology , Hydro-Lyases/metabolism , Iron-Sulfur Proteins/metabolism , Oxygen/pharmacology , Chloramphenicol/toxicity , Chromatography, Ion Exchange , Escherichia coli/drug effects , Escherichia coli/growth & development , Hydro-Lyases/antagonists & inhibitors , Hydro-Lyases/isolation & purification , Hyperbaric Oxygenation , Iron/analysis , Iron-Sulfur Proteins/antagonists & inhibitors , Iron-Sulfur Proteins/isolation & purification , Kinetics , Pressure
11.
J Biol Chem ; 268(30): 22369-76, 1993 Oct 25.
Article in English | MEDLINE | ID: mdl-8226748

ABSTRACT

We report in this paper that highly purified Escherichia coli dihydroxy-acid dehydratase, fumarase A, fumarase B, and mammalian aconitase are inactivated by O2- with second order rate constants in the range of 10(6) to 10(7) M-1 s-1. Each of these enzymes belongs to the hydro-lyase class and contains catalytically active [4Fe-4S] clusters. Simultaneous with inactivation by O2- is the release of iron from their clusters. Our working hypothesis is O2- inactivates these enzymes by oxidizing their clusters to an unstable oxidation state, and cluster degradation follows. Consistent with this hypothesis is our observation that spinach dihydroxy-acid dehydratase, a member of the hydro-lyase class that has a catalytically active [2Fe-2S] cluster, is not inactivated and does not lose iron in the presence of O2-. Porcine fumarase, a member of the hydro-lyase class that does not contain an Fe-S cluster, is also not inactivated by O2-. We also report the rate constants for the inactivation of E. coli dihydroxy-acid dehydratase, fumarase A, fumarase B, and mammalian aconitase by O2 are close to 2 x 10(2) M-1 s-1, and the rate constants for the inactivation of E. coli dihydroxy-acid dehydratase and mammalian aconitase by H2O2 are about 10(3) M-1 s-1. E. coli dihydroxy-acid dehydratase has been reported previously to be inactivated in vivo when cells are grown in hyperbaric O2, presumably due to the increased O2- generated under these conditions. We report here that E. coli fumarase A, fumarase B, and aconitase are also inactivated in vivo by hyperbaric O2. Thermodynamic parameters for the oxidation of the cluster of aconitase by O2- and O2 are calculated.


Subject(s)
Aconitate Hydratase/antagonists & inhibitors , Fumarate Hydratase/antagonists & inhibitors , Hydro-Lyases/antagonists & inhibitors , Iron-Sulfur Proteins/antagonists & inhibitors , Superoxides/pharmacology , Animals , Escherichia coli/enzymology , Iron/metabolism , Isoenzymes/antagonists & inhibitors , Kinetics , Mammals , Mathematics , Mitochondria/enzymology , Models, Theoretical , Vegetables/enzymology
12.
J Biol Chem ; 268(20): 14732-42, 1993 Jul 15.
Article in English | MEDLINE | ID: mdl-8325851

ABSTRACT

Dihydroxy-acid dehydratase has been purified from Escherichia coli and characterized as a homodimer with a subunit molecular weight of 66,000. The combination of UV visible absorption, EPR, magnetic circular dichroism, and resonance Raman spectroscopies indicates that the native enzyme contains a [4Fe-4S]2+,+ cluster, in contrast to spinach dihydroxy-acid dehydratase which contains a [2Fe-2S]2+,+ cluster (Flint, D. H., and Emptage, M. H. (1988) J. Biol. Chem. 263, 3558-3564). In frozen solution, the reduced [4Fe-4S]+ cluster has a S = 3/2 ground state with minor contributions from forms with S = 1/2 and possibly S = 5/2 ground states. Resonance Raman studies of the [4Fe-4S]2+ cluster in E. coli dihydroxy-acid dehydratase indicate non-cysteinyl coordination of a specific iron, which suggests that it is likely to be directly involved in catalysis as is the case with aconitase (Emptage, M. H., Kent, T. A., Kennedy, M. C., Beinert, H., and Münck, E. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 4674-4678). Dihydroxy-acid dehydratase from E. coli is inactivated by O2 in vitro and in vivo as a result of oxidative degradation of the [4Fe-4S]cluster. Compared to aconitase, the oxidized cluster of E. coli dihydroxy-acid dehydratase appears to be less stable as either a cubic or linear [3Fe-4S] cluster or a [2Fe-2S] cluster. Oxidative degradation appears to lead to a complete breakdown of the Fe-S cluster, and the resulting protein cannot be reactivated with Fe2+ and thiol reducing agents.


Subject(s)
Escherichia coli/enzymology , Hydro-Lyases/chemistry , Iron-Sulfur Proteins/metabolism , Amino Acid Sequence , Enzyme Activation , Hydro-Lyases/antagonists & inhibitors , Hydro-Lyases/isolation & purification , Hydro-Lyases/metabolism , Iron-Sulfur Proteins/analysis , Molecular Sequence Data , Oxidation-Reduction , Spectrum Analysis
13.
Free Radic Biol Med ; 14(6): 609-13, 1993 Jun.
Article in English | MEDLINE | ID: mdl-8392020

ABSTRACT

The effects of near ultraviolet (NUV) light on a NUV chromophore-containing oxidant-sensitive enzyme, dihydroxyacid dehydratase (DHAD), were measured in seven strains of Escherichia coli. The strains differed in production of the oxidant-defense enzymes, superoxide dismutases (Fe-SOD and Mn-SOD), and catalases HPI and HPII. With the stress of aerobic growth but without NUV exposure, the strains lacking either Fe or Mn SOD or both SODs had 57%, 25%, and 12%, respectively, of the DHAD-specific activity of the parent (K12) strain. Under the same conditions, the catalase strains that were wild type, overproducing, and deficient had comparable DHAD-specific activities. When aerobic cultures were exposed for 30 min to NUV with a fluence of 216 J/m2/s at 310-400 nm, the percentage decreases in DHAD-specific activities were similar (ranging from 75% to 89%) in strains with none, either, or both SODs missing, and in the catalase-overproducing strain. However, the decreases were only 58% and 52% in the strain with catalase missing and in its parent, respectively. The NUV-induced loss of DHAD enzyme activity was not accompanied by any detectable loss of the DHAD protein as measured by polyclonal antibody to DHAD.


Subject(s)
Escherichia coli/enzymology , Hydro-Lyases/antagonists & inhibitors , Hydro-Lyases/radiation effects , Catalase/metabolism , Escherichia coli/metabolism , Escherichia coli/radiation effects , Free Radicals/metabolism , Hydrogen Peroxide/metabolism , Oxidation-Reduction , Superoxide Dismutase/metabolism , Superoxides/metabolism , Ultraviolet Rays
14.
Biochemistry ; 32(3): 799-805, 1993 Jan 26.
Article in English | MEDLINE | ID: mdl-8422384

ABSTRACT

Fumarase A, a product of the fumA gene of Escherichia coli, has been found to catalyze the isomerization of enol to keto oxalacetic acid (OAA) in addition to catalyzing the fumarase reaction. The kcat/Km for the isomerization is almost identical to that for the fumarase reaction. The isomerization reaction apparently takes place at the same active site as the fumarase reaction since both reactions show a similar sensitivity to inactivation by O2, both reactions are strongly inhibited by 2-hydroxy-3-nitropropionate, and the isomerization reaction is inhibited by fumarate and malate. The isomerization requires the presence of a [4Fe-4S] or [3Fe-4S] cluster, perhaps for structural rather than catalytic reasons. Hydration of enol OAA to the gem diol has been ruled out as a possible mechanism of isomerization on the basis of the preservation of the oxygen on carbon 2 and the position of protonation on carbon 3. The isomerization is not stereospecific in the position of protonation at carbon 3 but appears to be stereoselective, with protonation preferentially occurring in the 3-pro-S position. Porcine fumarase, isopropyl malate isomerase, and dihydroxyacid dehydratase do not catalyze this isomerization. Fumarase A and aconitase, two enzymes with 4Fe-4S clusters that bind a linear 4-carbon dicarboxylic acid moiety in the trans conformation during their normal hydro-lyase reaction, do catalyze this isomerization.


Subject(s)
Bacterial Proteins/metabolism , Escherichia coli/enzymology , Fumarate Hydratase/metabolism , Intramolecular Oxidoreductases , Isomerases/metabolism , Oxaloacetates/metabolism , Aconitate Hydratase/metabolism , Binding Sites , Iron-Sulfur Proteins/metabolism , Isomerism , Kinetics , Malates/metabolism , Models, Chemical
15.
Biochemistry ; 31(42): 10331-7, 1992 Oct 27.
Article in English | MEDLINE | ID: mdl-1329945

ABSTRACT

It has been shown previously that Escherichia coli contains three fumarase genes designated fumA, fumB, and fumC. The gene products fumarases A, B, and C have been divided into two classes. Class I contains fumarases A and B, which have amino acid sequences that are 90% identical to each other, but have almost no similarity to the sequence of porcine fumarase. Class II contains fumarase C and porcine fumarase, which have amino acid sequences 60% identical to each other [Woods, S.A., Schwartzbach, S.D., & Guest, J.R. (1988) Biochim. Biophys. Acta 954, 14-26]. In this work it is shown that purified fumarase A contains a [4Fe-4S] cluster. This conclusion is based on the following observations. Fumarase A contains 4 Fe and 4 S2- per mole of protein monomer. (The mobility of fumarase A in native polyacrylamide gel electrophoresis and the elution volume on a gel permeation column indicate that it is a homodimer.) Its visible and circular dichroism spectra are characteristic of proteins containing an Fe-S cluster. Fumarase A can be reduced to an EPR active-state exhibiting a spectrum consisting of a rhombic spectrum at high fields (g-values = 2.03, 1.94, and 1.88) and a broad peak at g = 5.4. Upon addition of substrate, the high field signal shifts upfield (g-values = 2.035, 1.92, and 1.815) and increases in total spins by 8-fold, while the g = 5.4 signal disappears.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Escherichia coli/enzymology , Fumarate Hydratase/chemistry , Fumarate Hydratase/metabolism , Iron-Sulfur Proteins/chemistry , Iron-Sulfur Proteins/metabolism , Isoenzymes/chemistry , Isoenzymes/metabolism , Chromatography, Gel , Chromatography, Ion Exchange , Circular Dichroism , Electron Spin Resonance Spectroscopy , Escherichia coli/genetics , Ferricyanides/pharmacology , Fumarate Hydratase/isolation & purification , Genes, Bacterial , Iron-Sulfur Proteins/isolation & purification , Isoenzymes/isolation & purification , Kinetics , Multigene Family , Oxidation-Reduction , Plasmids , Protein Conformation , Spectrophotometry
16.
J Biol Chem ; 263(8): 3558-64, 1988 Mar 15.
Article in English | MEDLINE | ID: mdl-2831190

ABSTRACT

Dihydroxy acid dehydratase, the third enzyme in the branched-chain amino acid biosynthetic pathway, has been purified to homogeneity (5000-fold) from spinach leaves. The molecular weights of dihydroxy acid dehydratase as determined by sodium dodecyl sulfate and native gel electrophoresis are 63,000 and 110,000, respectively, suggesting the native enzyme is a dimer. 2 moles of iron were found per mol of protein monomer. Chemical analyses of iron and labile sulfide gave an Fe/S2- ratio of 0.95. The EPR spectrum of dithionite-reduced enzyme (gavg = 1.91) is similar to spectra characteristic of Rieske Fe-S proteins and has a spin concentration of 1 spin/1.9 irons. These results strongly suggest that dihydroxy acid dehydratase contains a [2Fe-2S] cluster, a novel finding for enzymes of the hydrolyase class. In contrast to the Rieske Fe-S proteins, the redox potential of the Fe-S cluster is quite low (-470 mV). Upon addition of substrate, the EPR signal of the reduced enzyme changes to one typical of 2Fe ferredoxins (gavg = 1.95), and the visible absorption spectrum of the native enzyme shows substantial changes between 400 and 600 nm. Reduction of the Fe-S cluster decreases the enzyme activity by 6-fold under Vmax conditions. These results suggest the direct involvement of the [2Fe-2S] cluster of dihydroxy acid dehydratase in catalysis. Similar conclusions have been reached for the catalytic involvement of the [4Fe-4S] cluster of the hydrolyase aconitase (Emptage, M. H., Kent, T. A., Kennedy, M. C., Beinert, H., and Münck, E. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 4674-4678).


Subject(s)
Hydro-Lyases/isolation & purification , Iron-Sulfur Proteins/isolation & purification , Metalloproteins/isolation & purification , Plants/enzymology , Electron Spin Resonance Spectroscopy , Hydro-Lyases/metabolism , Iron/analysis , Iron-Sulfur Proteins/metabolism , Kinetics , Macromolecular Substances , Molecular Weight , Oxidation-Reduction , Sulfur/analysis
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