Development and validation of a classification model for boar taint detection in pork fat samples.

This study aims to characterize a complete volatile organic compound profile of pork neck fat for boar taint prediction. The objectives are to identify specific compounds related to boar taint and to develop a classification model. In addition to the well-known androstenone, skatole and indole, 10 other features were found to be discriminant according to untargeted volatolomic analyses were conducted on 129 samples using HS-SPME-GC×GC-TOFMS. To select the odor-positive samples among the 129 analyzed, the selection was made by combining human nose evaluations with the skatole and androstenone concentrations determined using UHPLC-MS/MS. A comparison of the data of the two populations was performed and a statistical model analysis was built on 70 samples out of the total of 129 samples fully positive or fully negative through these two orthogonal methods for tainted prediction. Then, the model was applied to the 59 remaining samples. Finally, 7 samples were classified as tainted.

Investigation of potential migratables from paper and board food contact materials.

Since the ban on single-use plastic articles in Europe, the food contact material (FCM) industry has been forced to move to more sustainable alternatives. Paper and board FCM are convenient alternatives but must be safe for consumers. This study aims to investigate potential migrations of various substances (e.g., plasticizers, photoinitiators, primary aromatic amines, mineral oil, and bisphenols) from straws and takeaway articles made of paper and board. Twenty straws and fifty-eight takeaway articles were carefully selected and investigated using liquid and gas chromatography coupled with tandem mass spectrometry or flame ionization detector. Fourteen substances of all the targeted categories were found in takeaway articles, including seven plasticizers, two photoinitiators, one primary aromatic amine, two bisphenols, and the saturated and aromatic fraction of mineral oil (MOSH and MOAH, respectively). In straws, fewer substances were detected, i.e., six substances, including three plasticizers, one photoinitiator, MOSH, and MOAH. At least one of the target substances was detected in 88% of the samples, demonstrating the importance of further evaluation of these materials. Finally, the associated risks were assessed, highlighting the potential risks for several types of articles regarding bisphenol A, one primary aromatic amine (3.3-DMB), and MOSH and MOAH.

Theoretical modeling and machine learning-based data processing workflows in comprehensive two-dimensional gas chromatography-A review.

In recent years, comprehensive two-dimensional gas chromatography (GC × GC) has been gradually gaining prominence as a preferred method for the analysis of complex samples due to its higher peak capacity and resolution power compared to conventional gas chromatography (GC). Nonetheless, to fully benefit from the capabilities of GC × GC, a holistic approach to method development and data processing is essential for a successful and informative analysis. Method development enables the fine-tuning of the chromatographic separation, resulting in high-quality data. While generating such data is pivotal, it does not necessarily guarantee that meaningful information will be extracted from it. To this end, the first part of this manuscript reviews the importance of theoretical modeling in achieving good optimization of the separation conditions, ultimately improving the quality of the chromatographic separation. Multiple theoretical modeling approaches are discussed, with a special focus on thermodynamic-based modeling. The second part of this review highlights the importance of establishing robust data processing workflows, with a special emphasis on the use of advanced data processing tools such as, Machine Learning (ML) algorithms. Three widely used ML algorithms are discussed: Random Forest (RF), Support Vector Machine (SVM), and Partial Least Square-Discriminate Analysis (PLS-DA), highlighting their role in discovery-based analysis.

Correlations for untargeted GC × GC-HRTOF-MS metabolomics of colorectal cancer.

INTRODUCTION: Modern comprehensive instrumentations provide an unprecedented coverage of complex matrices in the form of high-dimensional, information rich data sets. OBJECTIVES: In addition to the usual biomarker research that focuses on the detection of the studied condition, we aimed to define a proper strategy to conduct a correlation analysis on an untargeted colorectal cancer case study with a data set of 102 variables corresponding to metabolites obtained from serum samples analyzed with comprehensive two-dimensional gas chromatography coupled to high-resolution time-of-flight mass spectrometry (GC × GC-HRTOF-MS). Indeed, the strength of association existing between the metabolites contains potentially valuable information about the molecular mechanisms involved and the underlying metabolic network associated to a global perturbation, at no additional analytical effort. METHODS: Following Anscombe's quartet, we took particular attention to four main aspects. First, the presence of non-linear relationships through the comparison of parametric and non-parametric correlation coefficients: Pearson's r, Spearman's rho, Kendall's tau and Goodman-Kruskal's gamma. Second, the visual control of the detected associations through scatterplots and their associated regressions and angles. Third, the effect and handling of atypical samples and values. Fourth, the role of the precision of the data on the attribution of the ranks through the presence of ties. RESULTS: Kendall's tau was found the method of choice for the data set at hand. Its application highlighted 17 correlations significantly altered in the active state of colorectal cancer (CRC) in comparison to matched healthy controls (HC), from which 10 were specific to this state in comparison to the remission one (R-CRC) investigated on distinct patients. 15 metabolites involved in the correlations of interest, on the 25 unique ones obtained, were annotated (Metabolomics Standards Initiative level 2). CONCLUSIONS: The metabolites highlighted could be used to better understand the pathology. The systematic investigation of the methodological aspects that we expose allows to implement correlation analysis to various fields and many specific cases.

Tile-Based Random Forest Analysis for Analyte Discovery in Balanced and Unbalanced GC × GC-TOFMS Data Sets.

In this study, we introduce a new nontargeted tile-based supervised analysis method that combines the four-grid tiling scheme previously established for the Fisher ratio (F-ratio) analysis (FRA) with the estimation of tile hit importance using the machine learning (ML) algorithm Random Forest (RF). This approach is termed tile-based RF analysis. As opposed to the standard tile-based F-ratio analysis, the RF approach can be extended to the analysis of unbalanced data sets, i.e., different numbers of samples per class. Tile-based RF computes out-of-bag (oob) tile hit importance estimates for every summed chromatographic signal within each tile on a per-mass channel basis (m/z). These estimates are then used to rank tile hits in a descending order of importance. In the present investigation, the RF approach was applied for a two-class comparison of stool samples collected from omnivore (O) subjects and stored using two different storage conditions: liquid (Liq) and lyophilized (Lyo). Two final hit lists were generated using balanced (8 vs Eight comparison) and unbalanced (8 vs Nine comparison) data sets and compared to the hit list generated by the standard F-ratio analysis. Similar class-distinguishing analytes (p < 0.01) were discovered by both methods. However, while the FRA discovered a more comprehensive hit list (65 hits), the RF approach strictly discovered hits (31 hits for the balanced data set comparison and 29 hits for the unbalanced data set comparison) with concentration ratios, [OLiq]/[OLyo], greater than 2 (or less than 0.5). This difference is attributed to the more stringent feature selection process used by the RF algorithm. Moreover, our findings suggest that the RF approach is a promising method for identifying class-distinguishing analytes in settings characterized by both high between-class variance and high within-class variance, making it an advantageous method in the study of complex biological matrices.

Comprehensive Insight into Colorectal Cancer Metabolites and Lipids for Human Serum: A Proof-of-Concept Study.

Colorectal cancer (CRC) ranks as the third most frequently diagnosed cancer and the second leading cause of cancer-related deaths. The current endoscopic-based or stool-based diagnostic techniques are either highly invasive or lack sufficient sensitivity. Thus, there is a need for less invasive and more sensitive screening approaches. We, therefore, conducted a study on 64 human serum samples representing three different groups (adenocarcinoma, adenoma, and control) using cutting-edge GC×GC-LR/HR-TOFMS (comprehensive two-dimensional gas chromatography coupled with low/high-resolution time-of-flight mass spectrometry). We analyzed samples with two different specifically tailored sample preparation approaches for lipidomics (fatty acids) (25 µL serum) and metabolomics (50 µL serum). In-depth chemometric screening with supervised and unsupervised approaches and metabolic pathway analysis were applied to both datasets. A lipidomics study revealed that specific PUFA (ω-3) molecules are inversely associated with increased odds of CRC, while some PUFA (ω-6) analytes show a positive correlation. The metabolomics approach revealed downregulation of amino acids (alanine, glutamate, methionine, threonine, tyrosine, and valine) and myo-inositol in CRC, while 3-hydroxybutyrate levels were increased. This unique study provides comprehensive insight into molecular-level changes associated with CRC and allows for a comparison of the efficiency of two different analytical approaches for CRC screening using same serum samples and single instrumentation.

Analysis of mixed plastic pyrolysis oil by comprehensive two-dimensional gas chromatography coupled with low- and high-resolution time-of-flight mass spectrometry with the support of soft ionization.

According to the annual production of plastics worldwide, in 2020 about 370 million tons of plastic were produced in the world. Chemical recycling, particularly pyrolysis of plastic wastes, could be a valuable solution to resolve these problems and provide an alternative pathway to produce "recycled" chemical products for the petrochemical industry. Nevertheless, the pyrolysis oils need a detailed characterization before the upgrading test to re-use them to generate new recycled products. Multidimensional gas chromatography coupled with both low- and high-resolution time-of-flight mass spectrometers was employed for a detailed investigation among and within different chemical classes present in bio-plastic oil. The presence of several isomeric species as well as homologs series did not allow a reliable molecular identification, except for a few compounds that showed both MS similarity >800/1000 and retention index within ±20. Indeed, the identification of several isomeric species was assessed by high-resolution mass spectrometry equipped with photoionization interface. This soft ionization mode was an additional filter in the identification step allowing unambiguous identification of analytes not identified by the standard electron ionization mode at 70 eV. The injection method was also optimized using a central composite design to successfully introduce a wide range of carbon number compounds without discrimination of low/high boiling points.

Lipid Serum Profiling of Boar-Tainted and Untainted Pigs Using GC×GC-TOFMS: An Exploratory Study.

Mass spectrometry (MS)-based techniques, including liquid chromatography coupling, shotgun lipidomics, MS imaging, and ion mobility, are widely used to analyze lipids. However, with enhanced separation capacity and an optimized chemical derivatization approach, comprehensive two-dimensional gas chromatography (GC×GC) can be a powerful tool to investigate some groups of small lipids in the framework of lipidomics. This study describes the optimization of a dedicated two-stage derivatization and extraction process to analyze different saturated and unsaturated fatty acids in plasma by two-dimensional gas chromatography-time-of-flight mass spectrometry (GC×GC-TOFMS) using a full factorial design. The optimized condition has a composite desirability of 0.9159. This optimized sample preparation and chromatographic condition were implemented to differentiate between positive (BT) and negative (UT) boar-tainted pigs based on fatty acid profiling in pig serum using GC×GC-TOFMS. A chemometric screening, including unsupervised (PCA, HCA) and supervised analysis (PLS-DA), as well as univariate analysis (volcano plot), was performed. The results suggested that the concentration of PUFA ω-6 and cholesterol derivatives were significantly increased in BT pigs, whereas SFA and PUFA ω-3 concentrations were increased in UT pigs. The metabolic pathway and quantitative enrichment analysis suggest the significant involvement of linolenic acid metabolism.

Top-Down Approach to Retention Time Prediction in Comprehensive Two-Dimensional Gas Chromatography-Mass Spectrometry.

In this contribution, we describe a novel modeling approach to predicting retention times (tr) in comprehensive two-dimensional gas chromatography coupled to time-of-flight mass spectrometry (GC × GC-ToF-MS) with a particular emphasis on the second-dimension (2D) retention time predictions (2tr). This approach is referred to as a "top-down" approach in that it breaks down the complete GC × GC separation into two independent one-dimensional gas chromatography separations (1D-GC). In this regard, both dimensions, that is, first dimension (1D) and second dimension (2D) are treated separately, and the cryogenic modulator is simply considered as a second consecutive injection device. Separate 1D-GC tr predictions are performed on both dimensions using the same flow rate as the one deployed in the conventional GC × GC system. The separate tr predictions are then combined to account for the two-dimensional separation. This model was applied to 24 analytes from 2 standard mixtures (Grob Test Mix and Fragrance Materials Test Mix) and assessed across 9 GC × GC chromatographic conditions. The experimental and predicted chromatographic retention space occupations were assessed by using the convex hull approach defined by the Delaunay triangulation. The predicted percentage of space occupation corresponded favorably with the experimental values. Furthermore, the top-down approach enabled an accurate prediction of the 2tr of all investigated analytes, providing an average 2tr modeling error of 0.26 ± 0.01 s.

Comprehensive two-dimensional gas chromatographic platforms comparison for exhaled breath metabolites analysis.

The high potential of exhaled breath for disease diagnosis has been highlighted in numerous studies. However, exhaled breath analysis is suffering from a lack of standardized sampling and analysis procedures, impacting the robustness of inter-laboratory results, and thus hampering proper external validation. The aim of this work was to verify compliance and validate the performance of two different comprehensive two-dimensional gas chromatography coupled to mass spectrometry platforms in different laboratories by monitoring probe metabolites in exhaled breath following the Peppermint Initiative guidelines. An initial assessment of the exhaled breath sampling conditions was performed, selecting the most suitable sampling bag material and volume. Then, a single sampling was performed using Tedlar bags, followed by the trapping of the volatile organic compounds into thermal desorption tubes for the subsequent analysis using two different analytical platforms. The thermal desorption tubes were first analyzed by a (cryogenically modulated) comprehensive two-dimensional gas chromatography system coupled to high-resolution time-of-flight mass spectrometry. The desorption was performed in split mode and the split part was recollected in the same tube and further analyzed by a different (flow modulated) comprehensive two-dimensional gas chromatography system with a parallel detection, specifically using a quadrupole mass spectrometer and a vacuum ultraviolet detector. Both the comprehensive two-dimensional gas chromatography platforms enabled the longitudinal tracking of the peppermint oil metabolites in exhaled breath. The increased sensitivity of comprehensive two-dimensional gas chromatography enabled to successfully monitor over a 6.5 h period a total of 10 target compounds, namely α-pinene, camphene, ß-pinene, limonene, cymene, eucalyptol, menthofuran, menthone, isomenthone, and neomenthol.

Distinguishing between Decaffeinated and Regular Coffee by HS-SPME-GC×GC-TOFMS, Chemometrics, and Machine Learning.

Coffee, one of the most popular beverages in the world, attracts consumers by its rich aroma and the stimulating effect of caffeine. Increasing consumers prefer decaffeinated coffee to regular coffee due to health concerns. There are some main decaffeination methods commonly used by commercial coffee producers for decades. However, a certain amount of the aroma precursors can be removed together with caffeine, which could cause a thin taste of decaffeinated coffee. To understand the difference between regular and decaffeinated coffee from the volatile composition point of view, headspace solid-phase microextraction two-dimensional gas chromatography time-of-flight mass spectrometry (HS-SPME-GC×GC-TOFMS) was employed to examine the headspace volatiles of eight pairs of regular and decaffeinated coffees in this study. Using the key aroma-related volatiles, decaffeinated coffee was significantly separated from regular coffee by principal component analysis (PCA). Using feature-selection tools (univariate analysis: t-test and multivariate analysis: partial least squares-discriminant analysis (PLS-DA)), a group of pyrazines was observed to be significantly different between regular coffee and decaffeinated coffee. Pyrazines were more enriched in the regular coffee, which was due to the reduction of sucrose during the decaffeination process. The reduction of pyrazines led to a lack of nutty, roasted, chocolate, earthy, and musty aroma in the decaffeinated coffee. For the non-targeted analysis, the random forest (RF) classification algorithm was used to select the most important features that could enable a distinct classification between the two coffee types. In total, 20 discriminatory features were identified. The results suggested that pyrazine-derived compounds were a strong marker for the regular coffee group whereas furan-derived compounds were a strong marker for the decaffeinated coffee samples.

The relevance of European Biota Quality Standards on the ecological water quality as determined by the multimetric macro-invertebrate index: A Flemish case study.

European Biota Quality Standards (EQSbiota), for compounds with low water solubility and high biomagnification, were created to sustain water quality and protect top predators and humans from secondary poisoning. In reality, for multiple compounds, an exceedance of these standards is often reported in literature without a decrease in ecological water quality determined by biotic indices. In the present study, threshold concentrations were defined in biota (from 44 sampling locations throughout Flanders (Belgium)), above which a good ecological water quality, assessed by the Multimetric Macroinvertebrate Index Flanders (MMIF), was never reached. Threshold values were compared to current EQSbiota. Accumulated perfluoroctane sulfonate (PFOS), mercury (Hg), hexabromocyclododecane (HBCD), polybrominated diphenyl ethers (PBDEs), dioxins and polychlorinated biphenyls (PCBs) concentrations were measured in muscle tissue of European yellow eel (Anguilla anguilla) and perch (Perca fluviatilis). Fluoranthene and benzo(a)pyrene were also analyzed in translocated mussels (Dreissena bugensis, D. polymorpha and Corbicula fluminea). Threshold values could only be calculated using a 90th quantile regression model for PFOS (in perch; 12 µg/kg ww), PCBs (in eel; 328 µg/kg ww) and benzo(a)pyrene (in mussels: 4.35 µg/kg ww). The lack of a significant regression model for the other compounds indicated an effective threshold value higher than the concentrations measured in the present study. Alternatively, the 95th percentile of concentrations measured in locations with a good ecological quality (MMIF≥0.7), was calculated for all compounds as an additional threshold value. Finally, fish concentrations were standardized for 5% lipid content (or 26% dry weight content for PFOS and Hg). Threshold values for PFOS and benzo(a)pyrene and the 95th percentiles for dioxins and fluoranthene were comparable to the existing standards. For all other compounds, the 95th percentile was higher than the current EQSbiota, while for HBCD, it was lower. These results strongly advise revising and fine-tuning the current EQSbiota, especially for ∑PBDE and HBCD.

Deeper investigation of oxygen-containing compounds in oleaginous feedstock (animal fat) by preparative column chromatography and comprehensive two-dimensional gas chromatography coupled with high-resolution time-of-flight mass spectrometry.

The production of renewable fuels as biodiesel and bio-jet fuel is usually originated by the transformation and processing of oleaginous feedstocks, mainly composed of triacylglycerols. Currently, a significant part of the triacylglycerol production relies on grassy oil crops or other woody oil plants, representing more than 120 million metric tons every year. Considering that the worldwide triacylglycerol demand is expected to rise in the future, alternative routes are necessary to ensure a sustainable biodiesel industry and limit diesel price volatility. In this context, the use of animal fats could be an interesting alternative for biodiesel production as the production of animal byproducts represents nearly 17 million tons per year in the European Union only (2020). Animal fats, however, contain large amounts of no-esterified fatty acids and other oxygen compounds, reducing the yield of biodiesel. Therefore, a specific pretreatment is needed before the trans-esterification process. The setup of such appropriate pretreatments requires detailed upstream characterization of the minor components present in the feedstock. For this purpose, the minor component profile of animal fat was investigated by comprehensive two-dimensional gas chromatography coupled with high-resolution time-of-flight mass spectrometry. This was preceded by an innovative sample fractionation and focalization of these minor components by a preparative liquid chromatographic column method. The overall method permitted to extract different levels of information from the two-dimensional chromatograms, leading to a tentative identification of more than 150 compounds, mainly oxygenated, belonging to different chemical classes.

Insights into Dodecenes Produced from Olefin Oligomerization Based on Two-Dimensional Gas Chromatography-Photoionization-Time of Flight Mass Spectrometry and Multivariate Statistics.

Catalyzed light olefin oligomerization is widely used in petrochemical industries to produce fuels and chemicals. Light olefins such as propene and butenes are commonly selected as feedstocks. Solid phosphoric acid (SPA) and zeolite are representative acidic catalysts. Both the feedstocks and catalysts have an impact on the product composition. In this study, state-of-the-art instrumentation two-dimensional gas chromatography (GC × GC) coupled photoionization-time of flight mass spectrometry was employed to investigate the composition of dodecene products produced from olefin oligomerization. Information such as the olefin congener distribution, dodecene structural subgroup distribution, and individual dodecene isomers was obtained and utilized in the statistical analyses. By using specific data sets of the product composition, the distinguishment between SPA and zeolite catalysts as well as among the feedstocks was achieved by applying the unsupervised screening approaches (principal component analysis and hierarchical clustering analysis). The potential indicators of catalysts and feedstocks were selected by the feature selection methods (univariate analysis: analysis of variance and multivariate analysis: partial least squares-discriminant analysis).

Effect of abiotic factors and environmental concentrations on the bioaccumulation of persistent organic and inorganic compounds to freshwater fish and mussels.

Many aquatic ecosystems are under persistent stress due to influxes of anthropogenic chemical pollutants. High concentrations can harm entire ecosystems and be toxic to humans. However, in case of highly hydrophobic compounds, their low water solubility precludes direct measurement in water, and thus alternative monitoring strategies are needed. In the present study, we investigated the extent to which bioaccumulated concentrations of persistent compounds can be predicted by concentrations in environmental compartments (water and sediment). Due to their high biomagnification potential, Hg and PFOS were included in this analysis as well. At 44 field locations in Flanders (Belgium), we monitored the concentrations of 11 priority compounds and their derivatives, included in the Water Framework Directive, in both sediment and water (where feasible) and biota (European perch, European eel and freshwater mussels). Besides, some sediment (i.e. total organic carbon (TOC) and clay content) and water characteristics were measured (i.e. pH, oxygen level, conductivity, nitrate, nitrite and dissolved organic carbon (DOC)). Measurements of HCB, HCBD, cis-heptachlorepoxide, HBCD and PFOS in sediment and ∑PCB in water showed a lower detection frequency than in fish samples. While PCB profiles were comparable between all matrices, for PBDE clear differences were detected between sediment and fish profiles, with BDE99 contributing the most for sediment (34%) and BDE47 for fish (≥44%), followed by BDE99 for perch (28%) and BDE100 for eel (25%). Water concentrations for PFOS and benzo(a)pyrene were predictive of respective bioaccumulated concentrations. HCB, ∑PCB and ∑PBDE, concentrations in fish were dependent on sediment concentrations and negatively related to organic compound levels (p < 0.05). Furthermore, pH and nitrite were negatively associated with accumulated concentrations in eel for HCB and PFOS, respectively (p < 0.05). Strong relationships between bioaccumulation and sediment and/or water concentrations strengthened the basis for surrogate monitoring methods. Finally, the extrapolation potential of Hg, ∑PBDE, PFOS, HBCD and ∑PCB between both fish species offered new opportunities in extrapolating different European monitoring frameworks.

Exploiting targeted and untargeted approaches for the analysis of bacterial metabolites under altered growth conditions.

In the host, pathogenic microorganisms have developed stress responses to cope with constantly changing environments. Stress responses are directly related to changes in several metabolomic pathways, which could hamper microorganisms' unequivocal identification. We evaluated the effect of various in vitro stress conditions (acidic, basic, oxidative, ethanolic, and saline conditions) on the metabolism of Staphylococcus aureus, Bacillus cereus, and Pseudomonas aeruginosa, which are common lung pathogens. The metabolite profiles of the bacteria were analyzed using liquid chromatography coupled to triple quadrupole and quadrupole time-of-flight mass spectrometry. The advantages of targeted and untargeted analysis combined with univariate and multivariate statistical analysis (principal component analysis, hierarchical cluster analysis, partial least square discriminant analysis, random forest) were combined to unequivocally identify bacterial species. In normal in vitro conditions, the targeted methodology, based on the analysis of primary metabolites, enabled the rapid and efficient discrimination of the three bacteria. In changing in vitro conditions and specifically in presence of the various stressors, the untargeted methodology proved to be more valuable for the global and accurate differentiation of the three bacteria, also considering the type of stress environment within each species. In addition, species-specific metabolites (i.e., fatty acids, polysaccharides, peptides, and nucleotide bases derivatives) were putatively identified. Good intra-day repeatability and inter-day repeatability (< 10% RSD and < 15% RSD, respectively) were obtained for the targeted and the untargeted methods. This untargeted approach highlights its importance in unusual (and less known) bacterial growth environments, being a powerful tool for infectious disease diagnosis, where the accurate classification of microorganisms is sought.

Modeling approaches for temperature-programmed gas chromatographic retention times under vacuum outlet conditions.

This contribution evaluates the performance of two predictive approaches in calculating temperature-programmed gas chromatographic retention times under vacuum outlet conditions. In the first approach, the predictions are performed according to a thermodynamic-based model, while in the second approach the predictions are conducted by using the temperature-programmed retention time equation. These modeling approaches were evaluated on 47 test compounds belonging to different chemical classes, under different experimental conditions, namely, two modes of gas flow regulation (i.e., constant inlet pressure and constant flow rate), and different temperature programs (i.e., 7 °C/min, 5 °C/min, and 3 °C/min). Both modeling approaches gave satisfactory results and were able to accurately predict the elution profiles of the studied test compounds. The thermodynamic-based model provided more satisfying results under constant flow rate mode, with average modeling errors of 0.43%, 0.33%, and 0.15% across all the studied temperature programs. Nevertheless, under constant inlet pressure mode, lower modeling errors were achieved when using the temperature-programmed retention time equation, with average modeling errors of 0.18%, 0.18%, and 0.31% across the used temperature programs.

Unraveling the Complex Olefin Isomer Mixture Using Two-Dimensional Gas Chromatography-Photoionization-Time of Flight Mass Spectrometry.

Commercial dodecenes are a complex chemical mixture with a majority of C12 olefins and minority of C8-18 olefins. Structurally, dodecene products may consist of straight-chain alkenes, branched alkenes, as well as cyclic hydrocarbons. Due to the difference of feeds and catalysts used in the oligomerization reaction, the composition of the dodecenes is complex and their properties are very different. Knowing the complex composition of dodecenes can help tune the production process and select the appropriate products according to their end use. To reveal the complex profile of dodecenes, an analytical method using two-dimensional gas chromatography (GC×GC) coupled photoionization (PI) - time of flight mass spectrometry (TOFMS) was developed in this study. A conventional (nonpolar × polar) column combination (non-polar column as 1st dimension and mid-polar column as 2nd dimension) was selected. The analytical condition of GC was optimized using fractional factorial experimental design (DoE). Olefin congener grouping by carbon chain length and double bond equivalent (DBE) was achieved based on the detection of molecular ions by PI-TOFMS. Grouping of dodecenes by linear, mono-branched, di- and tri-branched subgroups was achieved based on branching index (BI) under the assumption of no retention time (RT) overlap among subgroups. Certain dodecene isomers were identified by retention index (RI) and further confirmed by PI mass spectra. The information altogether provided a multimodal characterization possibility to be used with statistical tools. Principal component analysis (PCA) and hierarchical clustering analysis (HCA) of seventeen dodecene samples explained the composition variance between catalysts solid phosphoric acid and zeolite, as well as between feeds with C4 and without C4.

Breathomics to diagnose systemic sclerosis using thermal desorption and comprehensive two-dimensional gas chromatography high-resolution time-of-flight mass spectrometry.

Systemic sclerosis is a rare autoimmune disease associated with rapidly evolving interstitial lung disease, responsible for the disease severity and mortality. Specific biomarkers enabling the early diagnosis and prognosis associated with the disease progression are highly needed. Volatile organic compounds in exhaled breath are widely available and non-invasive and have the potential to reflect metabolic processes occurring within the body. Comprehensive two-dimensional gas chromatography coupled to high-resolution mass spectrometry was used to investigate the potential of exhaled breath to diagnose systemic sclerosis. The exhaled breath of 32 patients and 30 healthy subjects was analyzed. The high resolving power of this approach enabled the detection of 356 compounds in the breath of systemic sclerosis patients, which was characterized by an increase of mainly terpenoids and hydrocarbons. In addition, the use of 4 complementary statistical approaches (two-tailed equal variance t-test, fold change, partial least squares discriminant analysis, and random forest) resulted in the identification of 16 compounds that can be used to discriminate systemic sclerosis patients from healthy subjects. Receiver operating curves were generated that provided an accuracy of 90%, a sensitivity of 92%, and a specificity of 89%. The chemical identification of eight compounds predictive of systemic sclerosis was validated using commercially available standards. The analytical variations together with the volatile composition of room air were carefully monitored during the timeframe of the study to ensure the robustness of the technique. This study represents the first reported evaluation of exhaled breath analysis for systemic sclerosis diagnosis and provides surrogate markers for such disease.

A unique data analysis framework and open source benchmark data set for the analysis of comprehensive two-dimensional gas chromatography software.

Comprehensive two-dimensional gas chromatography (GC × GC) is amongst the most powerful separation technologies currently existing. Since its advent in early 1990, it has become an established method which is readily available. However, one of its most challenging aspects, especially in hyphenation with mass spectrometry is the high amount of chemical information it provides for each measurement. The GC × GC community agrees that there, the highest demand for action is found. In response, the number of software packages allowing for in-depth data processing of GC × GC data has risen over the last couple of years. These packages provide sophisticated tools and algorithms allowing for more streamlined data evaluation. However, these tools/algorithms and their respective specific functionalities differ drastically within the available software packages and might result in various levels of findings if not appropriately implemented by the end users. This study focuses on two main objectives. First, to propose a data analysis framework and second to propose an open-source dataset for benchmarking software options and their specificities. Thus, allowing for an unanimous and comprehensive evaluation of GC × GC software. Thereby, the benchmark data includes a set of standard compound measurements and a set of chocolate aroma profiles. On this foundation, eight readily available GC × GC software packages were anonymously investigated for fundamental and advanced functionalities such as retention and detection device derived parameters, revealing differences in the determination of e.g. retention times and mass spectra.