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1.
Sci Rep ; 7(1): 5119, 2017 07 11.
Article in English | MEDLINE | ID: mdl-28698597

ABSTRACT

Post-translational redox modification of methionine residues often triggers a change in protein function. Emerging evidence points to this reversible protein modification being an important regulatory mechanism under various physiological conditions. Reduction of oxidized methionine residues is catalyzed by methionine sulfoxide reductases (Msrs). Here, we show that one of these enzymes, a selenium-containing MsrB1, is highly expressed in immune-activated macrophages and contributes to shaping cellular and organismal immune responses. In particular, lipopolysaccharide (LPS) induces expression of MsrB1, but not other Msrs. Genetic ablation of MsrB1 did not preclude LPS-induced intracellular signaling in macrophages, but resulted in attenuated induction of anti-inflammatory cytokines, such as interleukin (IL)-10 and the IL-1 receptor antagonist. This anomaly was associated with excessive pro-inflammatory cytokine production as well as an increase in acute tissue inflammation in mice. Together, our findings suggest that MsrB1 controls immune responses by promoting anti-inflammatory cytokine expression in macrophages. MsrB1-dependent reduction of oxidized methionine in proteins may be a heretofore unrecognized regulatory event underlying immunity and inflammatory disease, and a novel target for clinical applications.


Subject(s)
Lipopolysaccharides/adverse effects , Macrophages/drug effects , Methionine Sulfoxide Reductases/metabolism , Phorbol Esters/adverse effects , Animals , Cells, Cultured , Female , Gene Expression Regulation/drug effects , Interleukin 1 Receptor Antagonist Protein/genetics , Interleukin-10/genetics , Macrophages/cytology , Macrophages/metabolism , Methionine Sulfoxide Reductases/genetics , Mice , Signal Transduction , Up-Regulation
2.
Genetics ; 198(3): 905-17, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25173844

ABSTRACT

Thiol peroxidases are critical enzymes in the redox control of cellular processes that function by reducing low levels of hydroperoxides and regulating redox signaling. These proteins were also shown to regulate genome stability, but how their dysfunction affects the actual mutations in the genome is not known. Saccharomyces cerevisiae has eight thiol peroxidases of glutathione peroxidase and peroxiredoxin families, and the mutant lacking all these genes (∆8) is viable. In this study, we employed two independent ∆8 isolates to analyze the genome-wide mutation spectrum that results from deficiency in these enzymes. Deletion of these genes was accompanied by a dramatic increase in point mutations, many of which clustered in close proximity and scattered throughout the genome, suggesting strong mutational bias. We further subjected multiple lines of wild-type and ∆8 cells to long-term mutation accumulation, followed by genome sequencing and phenotypic characterization. ∆8 lines showed a significant increase in nonrecurrent point mutations and indels. The original ∆8 cells exhibited reduced growth rate and decreased life span, which were further reduced in all ∆8 mutation accumulation lines. Although the mutation spectrum of the two independent isolates was different, similar patterns of gene expression were observed, suggesting the direct contribution of thiol peroxidases to the observed phenotypes. Expression of a single thiol peroxidase could partially restore the growth phenotype of ∆8 cells. This study shows how deficiency in nonessential, yet critical and conserved oxidoreductase function, leads to increased mutational load and decreased fitness.


Subject(s)
Genetic Fitness , Mutation/genetics , Peroxidases/deficiency , Peroxidases/genetics , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , DNA Damage/genetics , Gene Deletion , Gene Expression Regulation, Fungal , Genome, Fungal , INDEL Mutation/genetics , Mutation Rate , Phenotype , Point Mutation/genetics , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae Proteins/genetics , Transcriptome/genetics
3.
Mol Cell ; 51(3): 397-404, 2013 Aug 08.
Article in English | MEDLINE | ID: mdl-23911929

ABSTRACT

Redox control of protein function involves oxidation and reduction of amino acid residues, but the mechanisms and regulators involved are insufficiently understood. Here, we report that in conjunction with Mical proteins, methionine-R-sulfoxide reductase B1 (MsrB1) regulates mammalian actin assembly via stereoselective methionine oxidation and reduction in a reversible, site-specific manner. Two methionine residues in actin are specifically converted to methionine-R-sulfoxide by Mical1 and Mical2 and reduced back to methionine by selenoprotein MsrB1, supporting actin disassembly and assembly, respectively. Macrophages utilize this redox control during cellular activation by stimulating MsrB1 expression and activity as a part of innate immunity. We identified the regulatory role of MsrB1 as a Mical antagonist in orchestrating actin dynamics and macrophage function. More generally, our study shows that proteins can be regulated by reversible site-specific methionine-R-sulfoxidation.


Subject(s)
Actins/metabolism , Macrophages/metabolism , Methionine Sulfoxide Reductases/genetics , Methionine/metabolism , Microtubule-Associated Proteins/metabolism , Mixed Function Oxygenases/metabolism , Oxidoreductases/metabolism , Animals , Cells, Cultured , Mice , Mice, Knockout , Microfilament Proteins , Oxidation-Reduction , Oxidative Stress , Oxidoreductases/genetics
4.
PLoS One ; 8(6): e65637, 2013.
Article in English | MEDLINE | ID: mdl-23776515

ABSTRACT

Methionine can be reversibly oxidized to methionine sulfoxide (MetO) under physiological conditions. Organisms evolved two distinct methionine sulfoxide reductase families (MSRA & MSRB) to repair oxidized methionine residues. We found that 5 MSRB genes exist in the soybean genome, including GmMSRB1 and two segmentally duplicated gene pairs (GmMSRB2 and GmMSRB5, GmMSRB3 and GmMSRB4). GmMSRB2 and GmMSRB4 proteins showed MSRB activity toward protein-based MetO with either DTT or thioredoxin (TRX) as reductants, whereas GmMSRB1 was active only with DTT. GmMSRB2 had a typical MSRB mechanism with Cys121 and Cys 68 as catalytic and resolving residues, respectively. Surprisingly, this enzyme also possessed the MSRB activity toward free Met-R-O with kinetic parameters similar to those reported for fRMSR from Escherichia coli, an enzyme specific for free Met-R-O. Overexpression of GmMSRB2 or GmMSRB4 in the yeast cytosol supported the growth of the triple MSRA/MSRB/fRMSR (Δ3MSRs) mutant on MetO and protected cells against H2O2-induced stress. Taken together, our data reveal an unexpected diversity of MSRBs in plants and indicate that, in contrast to mammals that cannot reduce free Met-R-O and microorganisms that use fRMSR for this purpose, plants evolved MSRBs for the reduction of both free and protein-based MetO.


Subject(s)
Evolution, Molecular , Genes, Plant/genetics , Genetic Variation , Methionine Sulfoxide Reductases/genetics , Methionine/analogs & derivatives , Plants/enzymology , Base Sequence , Computational Biology , Escherichia coli , Methionine/metabolism , Molecular Sequence Data , Mutagenesis, Site-Directed , Polymerase Chain Reaction , Sequence Analysis, DNA , Glycine max/genetics , Glycine max/growth & development , Stress, Physiological/physiology , Synteny/genetics , Yeasts
5.
PLoS One ; 7(12): e50574, 2012.
Article in English | MEDLINE | ID: mdl-23226526

ABSTRACT

Evidence suggests that selenium has cancer preventive properties that are largely mediated through selenoproteins. Our previous observations demonstrated that targeted down-regulation of the 15 kDa selenoprotein (Sep15) in murine colon cancer cells resulted in the reversal of the cancer phenotype. The present study investigated the effect of Sep15 knockout in mice using a chemically-induced colon cancer model. Homozygous Sep15 knockout mice, and wild type littermate controls were given four weekly subcutaneous injections of azoxymethane (10 mg/kg). Sep15 knockout mice developed significantly (p<0.001) fewer aberrant crypt foci than controls demonstrating that loss of Sep15 protects against aberrant crypt foci formation. Dietary selenium above adequate levels did not significantly affect aberrant crypt foci formation in Sep15 knockout mice. To investigate molecular targets affected by loss of Sep15, gene expression patterns in colonic mucosal cells of knockout and wild type mice were examined using microarray analysis. Subsequent analyses verified that guanylate binding protein-1 (GBP-1) mRNA and protein expression were strongly upregulated in Sep15 knockout mice. GBP-1, which is expressed in response to interferon-γ, is considered to be an activation marker during inflammatory diseases, and up-regulation of GBP-1 in humans has been associated with a highly significant, increased five-year survival rate in colorectal cancer patients. In agreement with these studies, we observed a higher level of interferon-γ in plasma of Sep15 knockout mice. Overall, our results demonstrate for the first time, that Sep15 knockout mice are protected against chemically-induced aberrant crypt foci formation and that Sep15 appears to have oncogenic properties in colon carcinogenesis in vivo.


Subject(s)
Colonic Neoplasms/prevention & control , Selenoproteins/genetics , Animals , Base Sequence , Blotting, Western , Colonic Neoplasms/chemically induced , Cytokines/metabolism , DNA Primers , Gene Expression Profiling , Intestinal Mucosa/metabolism , Male , Mice , Mice, Knockout , Oligonucleotide Array Sequence Analysis , Real-Time Polymerase Chain Reaction , beta Catenin/metabolism
6.
Antioxid Redox Signal ; 16(3): 193-201, 2012 Feb 01.
Article in English | MEDLINE | ID: mdl-21902454

ABSTRACT

AIMS: Redox regulation of cellular processes is an important mechanism that operates in organisms from bacteria to mammals. Much of the redox control is provided by thiol oxidoreductases: proteins that employ cysteine residues for redox catalysis. We wanted to identify thiol oxidoreductases on a genome-wide scale and use this information to obtain insights into the general principles of thiol-based redox control. RESULTS: Thiol oxidoreductases were identified by three independent methods that took advantage of the occurrence of selenocysteine homologs of these proteins and functional linkages among thiol oxidoreductases revealed by comparative genomics. Based on these searches, we describe thioredoxomes, which are sets of thiol oxidoreductases in organisms. Their analyses revealed that these proteins are present in all living organisms, generally account for 0.5%-1% of the proteome and that their use correlates with proteome size, distinguishing these proteins from those involved in core metabolic functions. We further describe thioredoxomes of Saccharomyces cerevisiae and humans, including proteins which have not been characterized previously. Thiol oxidoreductases occur in various cellular compartments and are enriched in the endoplasmic reticulum and cytosol. INNOVATION: We developed bioinformatics methods and used them to characterize thioredoxomes on a genome-wide scale, which in turn revealed properties of thioredoxomes. CONCLUSION: These data provide information about organization and properties of thiol-based redox control, whose use is increased with the increase in complexity of organisms. Our data also show an essential combined function of a set of thiol oxidoreductases, and of thiol-based redox regulation in general, in all living organisms.


Subject(s)
Metabolism , Oxidoreductases Acting on Sulfur Group Donors/genetics , Amino Acid Sequence , Arabidopsis/enzymology , Arabidopsis/genetics , Bacteria/enzymology , Bacteria/genetics , Base Sequence , Data Mining , Databases, Genetic , Genomics , Humans , Molecular Sequence Data , Nanoarchaeota/enzymology , Nanoarchaeota/genetics , Operon , Oxidation-Reduction , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Sequence Homology
7.
PLoS One ; 6(11): e27772, 2011.
Article in English | MEDLINE | ID: mdl-22114689

ABSTRACT

Boron is an essential micronutrient for plants, and it is beneficial for animals. However, at high concentrations boron is toxic to cells although the mechanism of this toxicity is not known. Atr1 has recently been identified as a boron efflux pump whose expression is upregulated in response to boron treatment. Here, we found that the expression of ATR1 is associated with expression of genes involved in amino acid biosynthesis. These mechanisms are strictly controlled by the transcription factor Gcn4 in response to boron treatment. Further analyses have shown that boron impaired protein synthesis by promoting phosphorylation of eIF2α in a Gcn2 kinase dependent manner. The uncharged tRNA binding domain (HisRS) of Gcn2 is necessary for the phosphorylation of eIF2α in the presence of boron. We postulate that boron exerts its toxic effect through activation of the general amino acid control system and inhibition of protein synthesis. Since the general amino acid control pathway is conserved among eukaryotes, this mechanism of boron toxicity may be of general importance.


Subject(s)
Amino Acids/metabolism , Boron/adverse effects , Protein Biosynthesis/drug effects , Saccharomyces cerevisiae/drug effects , Aminoacylation/drug effects , Basic-Leucine Zipper Transcription Factors/genetics , Basic-Leucine Zipper Transcription Factors/metabolism , Biomarkers/metabolism , Blotting, Western , Gene Expression Profiling , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Oligonucleotide Array Sequence Analysis , Phosphorylation/drug effects , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , RNA, Messenger/genetics , RNA, Transfer , Real-Time Polymerase Chain Reaction , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , eIF-2 Kinase/genetics , eIF-2 Kinase/metabolism
8.
ACS Chem Biol ; 6(10): 1029-35, 2011 Oct 21.
Article in English | MEDLINE | ID: mdl-21823615

ABSTRACT

Identification of pathways of drug metabolism provides critical information regarding efficacy and safety of these compounds. Particularly challenging cases involve stereospecific processes. We found that broad classes of compounds containing methylsulfinyl groups are reduced to methylsulfides specifically by methionine sulfoxide reductase A, which acts on the S-stereomers of methionine sulfoxides, whereas the R-stereomers of these compounds could not be efficiently reduced by any methionine sulfoxide reductase in mammals. The findings of efficient reduction of S-methylsulfinyls and deficiency in the reduction of R-methylsulfinyls by methionine sulfoxide reductases suggest strategies for improved efficacy and decreased toxicity of drugs and natural compounds containing methylsulfinyls through targeted use of their enantiomers.


Subject(s)
Methionine Sulfoxide Reductases/metabolism , Pharmaceutical Preparations/metabolism , Sulfides/metabolism , Animals , HEK293 Cells , Humans , Liver/metabolism , Mice , Mice, Inbred C57BL , Oxidation-Reduction , Pharmaceutical Preparations/chemistry , Sulfides/chemistry
9.
J Biol Chem ; 286(38): 33203-12, 2011 Sep 23.
Article in English | MEDLINE | ID: mdl-21768092

ABSTRACT

The 15-kDa selenoprotein (Sep15) is a thioredoxin-like, endoplasmic reticulum-resident protein involved in the quality control of glycoprotein folding through its interaction with UDP-glucose:glycoprotein glucosyltransferase. Expression of Sep15 is regulated by dietary selenium and the unfolded protein response, but its specific function is not known. In this study, we developed and characterized Sep15 KO mice by targeted removal of exon 2 of the Sep15 gene coding for the cysteine-rich UDP-glucose:glycoprotein glucosyltransferase-binding domain. These KO mice synthesized a mutant mRNA, but the shortened protein product could be detected neither in tissues nor in Sep15 KO embryonic fibroblasts. Sep15 KO mice were viable and fertile, showed normal brain morphology, and did not activate endoplasmic reticulum stress pathways. However, parameters of oxidative stress were elevated in the livers of these mice. We found that Sep15 mRNA was enriched during lens development. Further phenotypic characterization of Sep15 KO mice revealed a prominent nuclear cataract that developed at an early age. These cataracts did not appear to be associated with severe oxidative stress or glucose dysregulation. We suggest that the cataracts resulted from an improper folding status of lens proteins caused by Sep15 deficiency.


Subject(s)
Cataract/metabolism , Cataract/pathology , Homeostasis , Selenoproteins/deficiency , Selenoproteins/metabolism , Amino Acid Sequence , Animals , Brain/metabolism , Brain/pathology , Gene Expression Regulation, Developmental , HEK293 Cells , Humans , Lens, Crystalline/embryology , Lens, Crystalline/metabolism , Lens, Crystalline/pathology , Male , Mice , Mice, Knockout , Molecular Sequence Data , Molecular Weight , Mutant Proteins/chemistry , Mutant Proteins/genetics , Mutant Proteins/metabolism , NIH 3T3 Cells , Oxidation-Reduction , Oxidative Stress , Prostate/metabolism , Prostate/pathology , RNA, Messenger/genetics , RNA, Messenger/metabolism , Selenoprotein P/metabolism , Selenoproteins/chemistry , Selenoproteins/genetics , Unfolded Protein Response
10.
J Biol Chem ; 286(19): 17005-14, 2011 May 13.
Article in English | MEDLINE | ID: mdl-21372135

ABSTRACT

Naked mole rat (MR) Heterocephalus glaber is a rodent model of delayed aging because of its unusually long life span (>28 years). It is also not known to develop cancer. In the current work, tissue imaging by x-ray fluorescence microscopy and direct analyses of trace elements revealed low levels of selenium in the MR liver and kidney, whereas MR and mouse brains had similar selenium levels. This effect was not explained by uniform selenium deficiency because methionine sulfoxide reductase activities were similar in mice and MR. However, glutathione peroxidase activity was an order of magnitude lower in MR liver and kidney than in mouse tissues. In addition, metabolic labeling of MR cells with (75)Se revealed a loss of the abundant glutathione peroxidase 1 (GPx1) band, whereas other selenoproteins were preserved. To characterize the MR selenoproteome, we sequenced its liver transcriptome. Gene reconstruction revealed standard selenoprotein sequences except for GPx1, which had an early stop codon, and SelP, which had low selenocysteine content. When expressed in HEK 293 cells, MR GPx1 was present in low levels, and its expression could be rescued neither by removing the early stop codon nor by replacing its SECIS element. In addition, GPx1 mRNA was present in lower levels in MR liver than in mouse liver. To determine if GPx1 deficiency could account for the reduced selenium content, we analyzed GPx1 knock-out mice and found reduced selenium levels in their livers and kidneys. Thus, MR is characterized by the reduced utilization of selenium due to a specific defect in GPx1 expression.


Subject(s)
Glutathione Peroxidase/chemistry , Selenium/chemistry , Animals , Brain/metabolism , Catalysis , Cell Line , HeLa Cells , Humans , Kidney/metabolism , Kidney/pathology , Liver/metabolism , Liver/pathology , Magnetic Resonance Imaging/methods , Methionine Sulfoxide Reductases/chemistry , Mice , Mice, Inbred C57BL , Mice, Knockout , Mole Rats , Rats , Glutathione Peroxidase GPX1
11.
Proc Natl Acad Sci U S A ; 108(7): 2729-34, 2011 Feb 15.
Article in English | MEDLINE | ID: mdl-21282621

ABSTRACT

Hydrogen peroxide is thought to regulate cellular processes by direct oxidation of numerous cellular proteins, whereas antioxidants, most notably thiol peroxidases, are thought to reduce peroxides and inhibit H(2)O(2) response. However, thiol peroxidases have also been implicated in activation of transcription factors and signaling. It remains unclear if these enzymes stimulate or inhibit redox regulation and whether this regulation is widespread or limited to a few cellular components. Herein, we found that Saccharomyces cerevisiae cells lacking all eight thiol peroxidases were viable and withstood redox stresses. They transcriptionally responded to various redox treatments, but were unable to activate and repress gene expression in response to H(2)O(2). Further studies involving redox transcription factors suggested that thiol peroxidases are major regulators of global gene expression in response to H(2)O(2). The data suggest that thiol peroxidases sense and transfer oxidative signals to the signaling proteins and regulate transcription, whereas a direct interaction between H(2)O(2) and other cellular proteins plays a secondary role.


Subject(s)
Gene Expression Regulation/drug effects , Hydrogen Peroxide/toxicity , Peroxidases/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Signal Transduction/drug effects , Base Sequence , Models, Biological , Molecular Sequence Data , Mutagenesis , Oligonucleotide Array Sequence Analysis , Oxidative Stress/genetics , Peroxidases/deficiency , Phenotype , Ribosomal Proteins/metabolism , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/genetics , Sequence Analysis, DNA , Signal Transduction/physiology
12.
Mech Ageing Dev ; 131(11-12): 692-9, 2010.
Article in English | MEDLINE | ID: mdl-20934449

ABSTRACT

Thiol-based redox reactions are involved in the regulation of a variety of biological functions, such as protection against oxidative stress, signal transduction and protein folding. Some proteins involved in redox regulation have been shown to modulate life span in organisms from yeast to mammals. To assess the role of thiol oxidoreductases in aging on a genome-wide scale, we analyzed the replicative life span of yeast cells lacking known and candidate thiol oxidoreductases. The data suggest the role of several pathways in controlling yeast replicative life span, including thioredoxin reduction, protein folding and degradation, peroxide reduction, PIP3 signaling, and ATP synthesis.


Subject(s)
Cellular Senescence , Methyltransferases/physiology , Saccharomyces cerevisiae/physiology , Adenosine Triphosphate/biosynthesis , Cell Cycle Proteins/metabolism , Methyltransferases/genetics , Mutation , Protein Folding , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae Proteins/metabolism , Thioredoxins/metabolism , Water/pharmacology
13.
Biochemistry ; 49(35): 7709-21, 2010 Sep 07.
Article in English | MEDLINE | ID: mdl-20698499

ABSTRACT

Numerous cellular processes are subject to redox regulation, and thiol-dependent redox control, acting through reactive cysteine (Cys) residues, is among the major mechanisms of redox regulation. However, information on the sets of proteins that provide thiol-based redox regulation or are affected by it is limited. Here, we describe proteomic approaches to characterize proteins that contain reactive thiols and methods to identify redox Cys in these proteins. Using Saccharomyces cerevisiae as a eukaryotic model organism, we identified 284 proteins with exposed reactive Cys and determined the identities of 185 of these residues. We then characterized subsets of these proteins as in vitro targets of major cellular thiol oxidoreductases, thioredoxin and glutaredoxin, and found that these enzymes can control the redox state of a significant number of thiols in target proteins. We further examined common features of exposed reactive Cys and compared them with an unbiased control set of Cys using computational approaches. This analysis (i) validated the efficacy of targeting exposed Cys in proteins in their native, folded state, (ii) quantified the proportion of targets that can be redox regulated via thiol oxidoreductase systems, and (iii) revealed the theoretical range of the experimental approach with regard to protein abundance and physicochemical properties of reactive Cys. From these analyses, we estimate that approximately one-fourth of exposed Cys in the yeast proteome can be regarded as functional sites, either subject to regulation by thiol oxidoreductases or involved in structural disulfides and metal binding.


Subject(s)
Cysteine/chemistry , Saccharomyces cerevisiae Proteins/chemistry , Cysteine/metabolism , Glutaredoxins/chemistry , Glutaredoxins/metabolism , Hydrophobic and Hydrophilic Interactions , Oxidation-Reduction , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Proteome/analysis , Proteome/metabolism , Proteomics/methods , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Sulfhydryl Compounds/chemistry , Sulfhydryl Compounds/metabolism , Surface Properties , Thioredoxins/chemistry , Thioredoxins/metabolism
14.
Biochemistry ; 49(39): 8618-25, 2010 Oct 05.
Article in English | MEDLINE | ID: mdl-20799725

ABSTRACT

Elevated levels of reactive oxygen species can damage proteins. Sulfur-containing amino acid residues, cysteine and methionine, are particularly susceptible to such damage. Various enzymes evolved to protect proteins or repair oxidized residues, including methionine sulfoxide reductases MsrA and MsrB, which reduce methionine (S)-sulfoxide (Met-SO) and methionine (R)-sulfoxide (Met-RO) residues, respectively, back to methionine. Here, we show that MsrA and MsrB are involved in the regulation of mitochondrial function. Saccharomyces cerevisiae mutant cells lacking MsrA, MsrB, or both proteins had normal levels of mitochondria but lower levels of cytochrome c and fewer respiration-competent mitochondria. The growth of single MsrA or MsrB mutants on respiratory carbon sources was inhibited, and that of the double mutant was severely compromised, indicating impairment of mitochondrial function. Although MsrA and MsrB are thought to have similar roles in oxidative protein repair each targeting a diastereomer of methionine sulfoxide, their deletion resulted in different phenotypes. GFP fusions of MsrA and MsrB showed different localization patterns and primarily localized to cytoplasm and mitochondria, respectively. This finding agreed with compartment-specific enrichment of MsrA and MsrB activities. These results show that oxidative stress contributes to mitochondrial dysfunction through oxidation of methionine residues in proteins located in different cellular compartments.


Subject(s)
Mitochondria/enzymology , Oxidoreductases/metabolism , Saccharomyces cerevisiae/enzymology , Gene Deletion , Methionine/metabolism , Methionine Sulfoxide Reductases , Oxidation-Reduction , Oxidative Stress , Oxidoreductases/analysis , Oxidoreductases/genetics , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae Proteins
15.
PLoS One ; 5(7): e11497, 2010 Jul 09.
Article in English | MEDLINE | ID: mdl-20634897

ABSTRACT

BACKGROUND: Methionine sulfoxide reductases (Msrs) are repair enzymes that protect proteins from oxidative stress by catalyzing stereospecific reduction of oxidized methionine residues. MsrB1 is a selenocysteine-containing cytosolic/nuclear Msr with high expression in liver and kidney. PRINCIPAL FINDINGS: Here, we identified differences in MsrB1 gene structure among mammals. Human MsrB1 gene consists of four, whereas the corresponding mouse gene of five exons, due to occurrence of an additional intron that flanks the stop signal and covers a large part of the 3'-UTR. This intron evolved in a subset of rodents through intronization of exonic sequences, whereas the human gene structure represents the ancestral form. In mice, both splice forms were detected in liver, kidney, brain and heart with the five-exon form being the major form. We found that both mRNA forms were translated and supported efficient selenocysteine insertion into MsrB1. In addition, MsrB1 occurs in two protein forms that migrate as 14 and 5 kDa proteins. We found that each mRNA splice form generated both protein forms. The abundance of the 5 kDa form was not influenced by protease inhibitors, replacement of selenocysteine in the active site or mutation of amino acids in the cleavage site. However, mutation of cysteines that coordinate a structural zinc decreased the levels of 5 and 14 kDa forms, suggesting importance of protein structure for biosynthesis and/stability of these forms. CONCLUSIONS: This study characterized unexpected diversity of protein and mRNA forms of mammalian selenoprotein MsrB1.


Subject(s)
Methionine Sulfoxide Reductases/genetics , Methionine Sulfoxide Reductases/metabolism , RNA, Messenger/genetics , Alternative Splicing/genetics , Alternative Splicing/physiology , Animals , Immunoblotting , Methionine Sulfoxide Reductases/chemistry , Mice , Mice, Inbred C57BL , Oxidative Stress , Protein Processing, Post-Translational/genetics , Protein Processing, Post-Translational/physiology
16.
Langmuir ; 26(1): 371-7, 2010 Jan 05.
Article in English | MEDLINE | ID: mdl-19728732

ABSTRACT

A general strategy to target cells by nanoparticles for drug delivery, imaging, or diagnostics involves immunospecific binding between the probes and target molecules on the particles and on the cell surface, respectively. Usually, the macromolecular nature of the molecules requires a specific conformation to achieve the desired immunospecificity, and the extent of deposition of particles is limited by the number of receptor molecules present on the cell. In this report, we successfully obtain targeted binding by decorating the nanoparticle with simple ions, such as Ca(2+), without affecting the cell's vitality. The yeast cells for study, Saccharomyces cerevisiae, have no specific electrostatic affinity toward positive charge as confirmed by lysine-coated Au nanoparticles. The specificity of nanoparticle binding is found to be directly related to the metabolic vitality of the yeast cell (i.e., a significantly larger deposition occurs on a younger generation with higher metabolism than on older cells). The ion-mediated targeted deposition seems to be a general phenomenon for biologically important ions, as demonstrated by the contrast between Mg(2+) and (toxic) Cd(2+). The high density of (percolating) nanoparticle deposition as a monolayer on the cells, as a result of the large number of ion receptors on the cell surface, is shown to be a potential method for building bioelectronic devices. The use of ions as an interface to target cells can have possible applications in diagnosing diseases and making biosensors using live cells.


Subject(s)
Gold/chemistry , Gold/metabolism , Metal Nanoparticles , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/metabolism , Anti-Bacterial Agents/pharmacology , Biological Transport/drug effects , Cell Survival , Ions/metabolism , Models, Molecular , Molecular Conformation , Saccharomyces cerevisiae/drug effects
17.
Mol Cell Biol ; 29(13): 3665-74, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19414602

ABSTRACT

Boron is a micronutrient in plants and animals, but its specific roles in cellular processes are not known. To understand boron transport and functions, we screened a yeast genomic DNA library for genes that confer resistance to the element in Saccharomyces cerevisiae. Thirty boron-resistant transformants were isolated, and they all contained the ATR1 (YML116w) gene. Atr1 is a multidrug resistance transport protein belonging to the major facilitator superfamily. C-terminal green fluorescent protein-tagged Atr1 localized to the cell membrane and vacuole, and ATR1 gene expression was upregulated by boron and several stress conditions. We found that atr1Delta mutants were highly sensitive to boron treatment, whereas cells overexpressing ATR1 were boron resistant. In addition, atr1Delta cells accumulated boron, whereas ATR1-overexpressing cells had low intracellular levels of the element. Furthermore, atr1Delta cells showed stronger boron-dependent phenotypes than mutants deficient in genes previously reported to be implicated in boron metabolism. ATR1 is widely distributed in bacteria, archaea, and lower eukaryotes. Our data suggest that Atr1 functions as a boron efflux pump and is required for boron tolerance.


Subject(s)
Boron/metabolism , Membrane Transport Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Amino Acid Sequence , Animals , Biological Transport/physiology , Boric Acids/metabolism , Gene Expression Profiling , Insecticides/metabolism , Membrane Transport Proteins/classification , Membrane Transport Proteins/genetics , Molecular Sequence Data , Oligonucleotide Array Sequence Analysis , Phylogeny , Protein Isoforms/genetics , Protein Isoforms/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/classification , Saccharomyces cerevisiae Proteins/genetics , Sequence Alignment , Sequence Homology, Amino Acid , Stress, Physiological
18.
Science ; 323(5911): 259-61, 2009 Jan 09.
Article in English | MEDLINE | ID: mdl-19131629

ABSTRACT

Strict one-to-one correspondence between codons and amino acids is thought to be an essential feature of the genetic code. However, we report that one codon can code for two different amino acids with the choice of the inserted amino acid determined by a specific 3' untranslated region structure and location of the dual-function codon within the messenger RNA (mRNA). We found that the codon UGA specifies insertion of selenocysteine and cysteine in the ciliate Euplotes crassus, that the dual use of this codon can occur even within the same gene, and that the structural arrangements of Euplotes mRNA preserve location-dependent dual function of UGA when expressed in mammalian cells. Thus, the genetic code supports the use of one codon to code for multiple amino acids.


Subject(s)
Codon, Terminator/genetics , Codon/genetics , Cysteine/genetics , Euplotes/genetics , Genetic Code , Selenocysteine/genetics , Selenoproteins/genetics , 3' Untranslated Regions , Amino Acid Sequence , Animals , Base Sequence , Cell Line , Cysteine/metabolism , Euplotes/chemistry , Humans , Molecular Sequence Data , Mutation , Protozoan Proteins/biosynthesis , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , RNA, Protozoan/genetics , RNA, Protozoan/metabolism , RNA, Transfer, Amino Acid-Specific/chemistry , RNA, Transfer, Amino Acid-Specific/genetics , RNA, Transfer, Cys/chemistry , RNA, Transfer, Cys/genetics , Recombinant Fusion Proteins/metabolism , Selenocysteine/metabolism , Selenoproteins/biosynthesis , Selenoproteins/chemistry
19.
J Biol Chem ; 284(9): 5986-93, 2009 Feb 27.
Article in English | MEDLINE | ID: mdl-18990697

ABSTRACT

Protein oxidation has been linked to accelerated aging and is a contributing factor to many diseases. Methionine residues are particularly susceptible to oxidation, but the resulting mixture of methionine R-sulfoxide (Met-RO) and methionine S-sulfoxide (Met-SO) can be repaired by thioredoxin-dependent enzymes MsrB and MsrA, respectively. Here, we describe a knock-out mouse deficient in selenoprotein MsrB1, the main mammalian MsrB located in the cytosol and nucleus. In these mice, in addition to the deletion of 14-kDa MsrB1, a 5-kDa selenoprotein form was specifically removed. Further studies revealed that the 5-kDa protein occurred in both mouse tissues and human HEK 293 cells; was down-regulated by MsrB1 small interfering RNA, selenium deficiency, and selenocysteine tRNA mutations; and was immunoprecipitated and recognized by MsrB1 antibodies. Specific labeling with (75)Se and mass spectrometry analyses revealed that the 5-kDa selenoprotein corresponded to the C-terminal sequence of MsrB1. The MsrB1 knock-out mice lacked both 5- and 14-kDa MsrB1 forms and showed reduced MsrB activity, with the strongest effect seen in liver and kidney. In addition, MsrA activity was decreased by MsrB1 deficiency. Liver and kidney of the MsrB1 knock-out mice also showed increased levels of malondialdehyde, protein carbonyls, protein methionine sulfoxide, and oxidized glutathione as well as reduced levels of free and protein thiols, whereas these parameters were little changed in other organs examined. Overall, this study established an important contribution of MsrB1 to the redox control in mouse liver and kidney and identified a novel form of this protein.


Subject(s)
Kidney/metabolism , Liver/metabolism , Methionine Sulfoxide Reductases/physiology , Oxidative Stress , Oxidoreductases/physiology , Selenium/metabolism , Selenoproteins/physiology , Amino Acid Sequence , Animals , Dietary Supplements , Glutathione/metabolism , Humans , Malondialdehyde/metabolism , Mice , Mice, Inbred BALB C , Mice, Knockout , Microfilament Proteins , Molecular Sequence Data , Oxidation-Reduction , Protein Carbonylation , Protein Conformation , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
20.
J Biol Chem ; 284(7): 4354-64, 2009 Feb 13.
Article in English | MEDLINE | ID: mdl-19049972

ABSTRACT

Methionine sulfoxide reductases (Msrs) are oxidoreductases that catalyze thiol-dependent reduction of oxidized methionines. MsrA and MsrB are the best known Msrs that repair methionine-S-sulfoxide (Met-S-SO) and methionine-R-sulfoxide (Met-R-SO) residues in proteins, respectively. In addition, an Escherichia coli enzyme specific for free Met-R-SO, designated fRMsr, was recently discovered. In this work, we carried out comparative genomic and experimental analyses to examine occurrence, evolution, and function of fRMsr. This protein is present in single copies and two mutually exclusive subtypes in about half of prokaryotes and unicellular eukaryotes but is missing in higher plants and animals. A Saccharomyces cerevisiae fRMsr homolog was found to reduce free Met-R-SO but not free Met-S-SO or dabsyl-Met-R-SO. fRMsr was responsible for growth of yeast cells on Met-R-SO, and the double fRMsr/MsrA mutant could not grow on a mixture of methionine sulfoxides. However, in the presence of methionine, even the triple fRMsr/MsrA/MsrB mutant was viable. In addition, fRMsr deletion strain showed an increased sensitivity to oxidative stress and a decreased life span, whereas overexpression of fRMsr conferred higher resistance to oxidants. Molecular modeling and cysteine residue targeting by thioredoxin pointed to Cys(101) as catalytic and Cys(125) as resolving residues in yeast fRMsr. These residues as well as a third Cys, resolving Cys(91), clustered in the structure, and each was required for the catalytic activity of the enzyme. The data show that fRMsr is the main enzyme responsible for the reduction of free Met-R-SO in S. cerevisiae.


Subject(s)
Evolution, Molecular , Methionine/analogs & derivatives , Models, Molecular , Oxidoreductases/chemistry , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae/enzymology , Catalysis , Escherichia coli/enzymology , Escherichia coli/genetics , Methionine/chemistry , Methionine/genetics , Methionine/metabolism , Methionine Sulfoxide Reductases , Mutation , Oxidation-Reduction , Oxidoreductases/genetics , Oxidoreductases/metabolism , Protein Structure, Tertiary/physiology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Sequence Homology, Amino Acid
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