Genetic Differentiation of the Steppe Field Mouse Sylvaemus witherbyi Populations: The Results of the Mitochondrial DNA Control Region Analysis.

The degree of genetic diversity of the steppe field mouse was estimated on the basis of the mtDNA control region variability data. Polymorphism of this mtDNA marker in S. witherbyi was more pronounced than previously assumed. The steppe field mouse population from the northern shore of Lake Manych-Gudilo includes several mitochondrial lines, which may be due to the existence of several migration flows to this area from Southwest Asia.

Phylogenetic relationships of intraspecific forms of the house mouse Mus musculus: Analysis of variability of the control region (D-loop) of mitochondrial DNA.

Analysis of the control region of mitochondrial DNA (mtDNA) or D-loop of 96 house mice (Mus musculus) from Russia, Moldova, Armenia, Azerbaijan, Kazakhstan, and Turkmenistan has been used to reconstruct the phylogenetic relationships and phylogeographic patterns of intraspecific forms. New data on the phylogenetic structure of the house mouse are presented. Three phylogroups can be reliably distinguished in the eastern part of the M. musculus species range, the first one mainly comprising the haplotypes of mice from Transcaucasia (Armenia); the second one, the haplotypes of mice from Kazakhstan; and the third one, the haplotypes of mice from Siberia and some other regions. The morphological subspecies M. m. wagneri and M. m. gansuensis have proved to be genetically heterogeneous and did not form discrete phylogroups in the phylogenetic tree.

The quantum-chemical approach to calculations of thermodynamic and structural parameters of formation of fatty acid monolayers with hexagonal packing at the air/water interface.

The structural parameters of fatty acid (with formula CnH2n+1COOH, n = 7-16) monolayers at the air/water interface were modeled within quantum-chemical semiempirical program complex Mopac 2012 (PM3 method). On the basis of quantum-chemical calculations it was shown that molecules in the highly ordered monolayer can be oriented at the angle ∼16° (tilted monolayer), or at the angle ∼0° to the normal to the air/water interface (untilted monolayer). The structural parameters of both tilted and untilted monolayers correspond well to the experimental data. The parameters of the unit cell of the modelled tilted monolayer are: a = 8.0-8.2 Å and b = 4.2-4.5 Å (with the corresponding experimental data 8.4-8.7 Å and 4.9-5.0 Å). For the modelled untilted monolayer these parameters are: a = 7.7-8.0 Å; b = 4.6 Å (with the corresponding experimental data 8.4 Å and 4.8-4.9 Å). Enthalpy, entropy and Gibbs' energy of clusterization were calculated for both structures. The correlation dependencies of the calculated parameters on the number of pair intermolecular CHHC interactions in the clusters and the pair interactions between functional groups were obtained. It was shown that the spontaneous clusterization of the fatty carboxylic acids at the air/water interface under standard conditions is energetically preferable for molecules which have 13 or more carbon atoms in the alkyl chain and this result also agrees with the corresponding experimental parameters.

A quantum chemical model for assessment of the temperature dependence in monolayer formation of amphiphiles at the air/water interface.

In the present study it is shown that parameters used in the framework of the model for the assessment of the threshold temperature of spontaneous clusterization of nonionic amphiphiles at the air/water interface (T(Cl)) are independent of the amphiphile type used in the developed schemes. The temperature dependence of the clusterization Gibbs' energies of alkyl amides, α-amino acids and 2-hydroxycarboxylic acids obtained in the framework of several schemes is listed. The exploited schemes differ from each other by the degree of their theoretical validity. The values of the clusterization threshold temperature for substituted alkanes can be described by a fractionally linear function versus the number of CH···HC interactions in the framework of the simplest scheme taking into account the found corrections and agree well with available experimental data.

Superposition-additive approach in the description of thermodynamic parameters of formation and clusterization of substituted alkanes at the air/water interface.

The superposition-additive approach developed previously was shown to be applicable for the calculations of the thermodynamic parameters of formation and atomization of conjugate systems, their dipole polarizability, molecular diamagnetic susceptibility, π-electronic ring currents, etc. In the present work, the applicability of this approach for the calculation of the thermodynamic parameters of formation and clusterization at the water/air interface of alkanes, fatty alcohols, thioalcohols, amines, nitriles, fatty acids (C(n)H(2n+1)X, X is the functional group) and cis-unsaturated carboxylic acids (C(n)H(2n-1)COOH) is studied. Using the proposed approach the thermodynamic quantities determined agree well with the available data, either calculated using the semiempirical (PM3) quantum chemical method, or obtained in experiments. In particular, for enthalpy and Gibbs' energy of the formation of substituted alkane monomers from the elementary substances, and their absolute entropy, the standard deviations of the values calculated according to the superposition-additive scheme with the mutual superimposition domain C(n-2)H(2n-4) (n is the number of carbon atoms in the alkyl chain) from the results of PM3 calculations for alkanes, alcohols, thioalcohols, amines, fatty acids, nitriles and cis-unsaturated carboxylic acids are respectively: 0.05, 0.004, 2.87, 0.02, 0.01, 0.77, and 0.01 kJ/mol for enthalpy; 2.32, 5.26, 4.49, 0.53, 1.22, 1.02, 5.30 J/(molK) for absolute entropy; 0.69, 1.56, 3.82, 0.15, 0.37, 0.69, 1.58 kJ/mol for Gibbs' energy, whereas the deviations from the experimental data are: 0.52, 5.75, 1.40, 1.00, 4.86 kJ/mol; 0.52, 0.63, 1.40, 6.11, 2.21 J/(molK); 2.52, 5.76, 1.58, 1.78, 4.86 kJ/mol, respectively (for nitriles and cis-unsaturated carboxylic acids experimental data are not available). The proposed approach provides also quite accurate estimates of enthalpy, entropy and Gibbs' energy of boiling and melting, critical temperatures and standard heat capacities for several classes of substituted alkanes. For the calculation of thermodynamic functions of clusterization of dimers, trimers and tetramers of fatty alcohols, thioalcohols, amines, carboxylic acids and cis-unsaturated carboxylic acids two superposition-additive schemes are proposed which ensure the correct superimposition of the molecular graphs, including intermolecular hydrogen-hydrogen interactions in the clusters. The calculations involve the thermodynamic parameters of clusterization obtained earlier by the PM3 method. It is shown that the proposed approach reproduces quite accurately the values calculated earlier and is applicable for the prediction of the thermodynamic parameters of the formation of surfactant monolayers.

Temperature effect on the monolayer formation of substituted alkanes at the air/water interface: a quantum chemical approach.

An approach to calculation of the threshold temperature for spontaneous clusterization of substituted alkanes (amines, nitriles, alcohols, thioalcohols, saturated and unsaturated carboxylic acids, α-amino acids, carboxylic acid amides, and melamine derivatives) at the air/water interface with dependence on the alkyl chain length was developed. In the framework of this approach, four schemes for the description of the temperature dependencies of the thermodynamic parameters of clusterization of the concerned amphiphilic compounds were proposed. They use the data obtained previously in the framework of quantum chemical semiempirical PM3 method and differ from each other by the degree of their theoretical accuracy. It was shown that the threshold temperature for spontaneous clusterization of the regarded classes of substituted alkanes can be described using a fractionally linear function in dependence on the alkyl chain length. It was found that, in agreement with the presented experimental data, the effect of the alkyl chain elongation of the substituted alkanes by two methylene units correlates with the decrease of the subphase temperature (ΔT) by 10-20 K. The general shape of the obtained dependencies indicates that the difference in the ΔT values for the amphiphilic molecules decreases with increasing alkyl chain length. This implies that the contribution of the intermolecular CH···HC interactions between the alkyl chains of monolayer molecules should be a decisive factor.

Thermodynamics of the clusterization process of trans-isomers of unsaturated fatty acids at the air/water interface.

In the frameworks of the quantum-chemical semiempirical PM3 method, the thermodynamic parameters of trans-isomers of unsaturated carboxylic acids at the air/water interface were studied. Systems with 18-26 carbon atoms in the alkyl chain and different positions of the double bond are considered. Using quantum-chemical semiempirical PM3 method enthalpy, Gibbs' energy of monomers' formation from the elementary compounds and absolute entropy of trans-unsaturated carboxylic acids are calculated. It has been shown that thermodynamic parameters mentioned above for isomers with the same number of carbon atoms in the hydrocarbon chain but different position of double bond are practically the same within the margin of error. For dimers, trimers, and tetramers of the four trans-unsaturated carboxylic acids, the thermodynamic parameters of clusterization were calculated. It is shown that the position of double bond does not significantly affect the values of thermodynamic parameters of formation and clusterization of carboxylic acids with equal alkyl chain lengths. The only exception is the case that the double bond is in the ω-position (extremely distanced from the carboxylic group). In this case, the number of intermolecular interactions between alkyl chains is changed. Spontaneous clusterization of trans- in the standard conditions is possible for molecules that possess more than 16-17 carbon atoms in the alkyl chain. These threshold values exceed the corresponding values that were calculated previously using the quantum-chemical PM3 method for saturated carboxylic acids (12-13 carbon atoms in the alkyl chain) and are a little bit smaller than the corresponding parameters for cis-unsaturated carboxylic acids (18-19 carbon atoms). These values agree with experimental parameters. Also, the calculated structural parameters of trans-unsaturated carboxylic acids' monolayer for the unit cell with a = 6.98 Å, b = 8.30 Å, and for the molecular tilt angle with 64.95° agree with the experimental parameters.

Superposition-additive approach: thermodynamic parameters of clusterization of monosubstituted alkanes at the air/water interface.

The applicability of the superposition-additive approach for the calculation of the thermodynamic parameters of formation and atomization of conjugate systems, their dipole electric polarisabilities, molecular diamagnetic susceptibilities, π-electron circular currents, as well as for the estimation of the thermodynamic parameters of substituted alkanes, was demonstrated earlier. Now the applicability of the superposition-additive approach for the description of clusterization of fatty alcohols, thioalcohols, amines, carboxylic acids at the air/water interface is studied. Two superposition-additive schemes are used that ensure the maximum superimposition of the graphs of the considered molecular structures including the intermolecular CH-HC interactions within the clusters. The thermodynamic parameters of clusterization are calculated for dimers, trimers and tetramers. The calculations are based on the values of enthalpy, entropy and Gibbs' energy of clusterization calculated earlier using the semiempirical quantum chemical PM3 method. It is shown that the proposed approach is capable of the reproduction with sufficiently enough accuracy of the values calculated previously.

Quantum-chemical analysis of thermodynamics of two-dimensional cluster formation of racemic α-amino acids at the air/water interface.

The quantum-chemical semiempiric PM3 method is used to calculate the thermodynamic parameters of clusterization for the racemic α-amino acids C(n)H(2n+1)CHNH(2)COOH with n=5-15 at 278 and 298 K. Possible relative orientations of the monomers in the heterochiral clusters are considered. It is shown that, for the racemic mixtures of α-amino acids, the formation of heterochiral 2D films is most energetically preferable with the alternating (rather than "checkered") packing of the enantiomers with opposite specific rotation. The two enantiomeric forms of α-amino acids in the heterochiral 2D clusters are tilted with respect to the normal to the q direction at angles of φ(1)=20° and φ(2) = 33°, whereas the single enantiomeric forms are oriented at an angle of δ=9° with respect to the normal to the p direction. It is shown that the heterochiral 2D film based on the α-amino acid structures oriented at the angle φ(2)=33° with respect to the normal to the q direction possesses a rectangular unit cell with the geometric parameters a = 4.62 Å and b = 10.70 Å and the tilt angle of the alkyl chain of the molecule with respect to the interface t(2)=35°, which is in good agreement with the X-ray structural data a=4.80 Å, b=9.67 Å, and t(2)=37°. The parameters of the lattice structure of monolayers formed by amphiphilic amino acids are shown to be determined by the "a" type of the intermolecular H-H interactions, whereas the tilt angle of the molecules with respect to the interface depends on the volume and the structure of the functional groups involved in the hydrophilic part of the molecule. Spontaneous clusterization of the racemic form of α-amino acids at the air/water interface at 278 K takes place if the alkyl chain length is equal or higher than 12-13 carbon atoms, whereas for 298 K this clusterization threshold corresponds to 14 carbon atoms in the hydrocarbon chain. These values agree with the experimental data.

[Immunobiological properties of bacteria].

Opsonins found on the surface of microbial cells in vivo and ex vivo are characterized. The possibility of their visualization by immune electron and fluorescent microscopy has been demonstrated. Opsonins are shown to play a role in immune-mediated adhesion of bacteria to phagocytes and erythrocytes and formation of virus-bacterium associations. Staphylococci, Streptococci, and Propionibacteria appear to actively adsorb blood proteins on their cell surface giving rise to well-apparent capsular structures tentatively called immunoglobulin coatings. Pathogen (microorganism)-associated molecular patterns of gram-positive and gram-negative bacteria show different degree of interaction with soluble proteins that in turn promote their adhesion to blood corpuscles. The role of erythrocytes in transportation and elimination of immune complexes bound to their membrane receptors is discussed.

Quantum-chemical analysis of thermodynamics of two-dimensional cluster formation of alpha-amino acids at the air/water interface.

The semiempirical quantum-chemical PM3 method is used to calculate the thermodynamic parameters of clusterization of the S-form of alpha-amino acids with the general composition C(n)H(2n+1)CHNH(2)COOH (n = 5-15) at 278 and 298 K. It is shown that six stable conformations of monomers exist, for which the thermodynamic parameters (enthalpy and Gibbs' energy) of the formation and absolute entropy are calculated. The correlation dependencies of the calculated parameters on the alkyl chain length are found to be linear. The structures of the monomers are used to build larger clusters (dimers, tetramers, hexamers). For all small clusters (comprised of two to six molecules), the thermodynamic parameters of formation and clusterization are calculated. It is shown that for tetramers and hexamers the enthalpy, entropy, and Gibbs' energy of clusterization are linearly dependent on the alkyl chain length, whereas for the dimers these dependencies are stepwise. The thermodynamic characteristics of clusterization of associates tilted by angles of 9 and 30 degrees with respect to the normal to the interface are calculated. It is shown that the 30 degrees angle orientation is more energetically advantageous for this class of compounds. The geometric parameters of the unit cell characteristic for the infinite 2D film which corresponds to the most advantageous conformation of the monomer were calculated using the PM3 parametrization to be a = 4.57-4.71 A and b = 5.67-5.75 A, with the angle between the axes theta = 100-103 degrees . These values agree well with the available experimental data. Spontaneous clusterization of alpha-amino acids at the air/water interface at 278 K takes place if the alkyl chain length exceeds 11-12 carbon atoms, whereas for 298 K this clusterization threshold corresponds to 13-14 carbon atoms in the alkyl chain, also in agreement with the experimental data.