Computational remodeling of an enzyme conformational landscape for altered substrate selectivity.

Structural plasticity of enzymes dictates their function. Yet, our ability to rationally remodel enzyme conformational landscapes to tailor catalytic properties remains limited. Here, we report a computational procedure for tuning conformational landscapes that is based on multistate design of hinge-mediated domain motions. Using this method, we redesign the conformational landscape of a natural aminotransferase to preferentially stabilize a less populated but reactive conformation and thereby increase catalytic efficiency with a non-native substrate, resulting in altered substrate selectivity. Steady-state kinetics of designed variants reveals activity increases with the non-native substrate of approximately 100-fold and selectivity switches of up to 1900-fold. Structural analyses by room-temperature X-ray crystallography and multitemperature nuclear magnetic resonance spectroscopy confirm that conformational equilibria favor the target conformation. Our computational approach opens the door to targeted alterations of conformational states and equilibria, which should facilitate the design of biocatalysts with customized activity and selectivity.

The role of halogens in the catalyst transfer polycondensation for π-conjugated polymers.

Catalyst transfer polycondensation is the only method to prepare π-conjugated polymers in a chain-growth manner, yet several aspects that underlie this polymerization are not fully understood. Here, we investigate the nickel-catalyzed polymerization mechanisms of a series of thiophene monomers bearing different halogen functionalities (Cl, Br, I). We have discovered the significant role that halogens and magnesium salts play in this polymerization. More specifically, the catalyst resting state changes depending on the type of halogenated monomer. For chlorinated monomers a mixture of Ni(ii)-dithienyl and dissociated Ni(phosphine) complexes are the resting states, which results in uncontrolled polymerization. For brominated monomers, a Ni(ii)-dithienyl complex is the resting state, which leads to controlled polymerization. For iodinated monomers, a Ni(ii)-thienyl iodide complex is the resting state, and notable inhibition by magnesium salt by-products is observed. The catalyst resting state changes to a Ni(ii)-dithienyl complex when a turbo Grignard reagent (i-PrMgCl·LiCl) is used. These findings are used to guide the design of a new monomer, 2-bromo-3-(2-ethylhexyl)-5-iodotellurophene, which enables the first controlled polymerization of a tellurophene monomer containing a sterically encumbered 2-ethylhexyl side chain. These insights are crucial for deepening the mechanistic understanding of Kumada cross coupling reactions and the controlled synthesis of π-conjugated polymers.