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1.
Nat Commun ; 8: 15575, 2017 05 30.
Article in English | MEDLINE | ID: mdl-28555639

ABSTRACT

Although much has been done to understand how rearrangement of the Igκ locus is regulated during B-cell development, little is known about the way the variable (V) segments themselves are selected. Here we show, using B6/Cast hybrid pre-B-cell clones, that a limited number of V segments on each allele is stochastically activated as characterized by the appearance of non-coding RNA and histone modifications. The activation states are clonally distinct, stable across cell division and developmentally important in directing the Ig repertoire upon differentiation. Using a new approach of allelic ATAC-seq, we demonstrate that the Igκ V alleles have differential chromatin accessibility, which may serve as the underlying basis of clonal maintenance at this locus, as well as other instances of monoallelic expression throughout the genome. These findings highlight a new level of immune system regulation that optimizes gene diversity.


Subject(s)
Alleles , Chromatin/metabolism , Immunoglobulin Variable Region/genetics , Immunoglobulin kappa-Chains/metabolism , Animals , Antibodies/immunology , Female , Genetic Variation , Histones/metabolism , Immune System , Mice , Mice, Inbred C57BL , Precursor Cells, B-Lymphoid/immunology , RNA, Untranslated/genetics , Transcription, Genetic
2.
Nature ; 490(7421): 561-5, 2012 Oct 25.
Article in English | MEDLINE | ID: mdl-23023124

ABSTRACT

Although most genes are expressed biallelically, a number of key genomic sites--including immune and olfactory receptor regions--are controlled monoallelically in a stochastic manner, with some cells expressing the maternal allele and others the paternal allele in the target tissue. Very little is known about how this phenomenon is regulated and programmed during development. Here, using mouse immunoglobulin-κ (Igκ) as a model system, we demonstrate that although individual haematopoietic stem cells are characterized by allelic plasticity, early lymphoid lineage cells become committed to the choice of a single allele, and this decision is then stably maintained in a clonal manner that predetermines monoallelic rearrangement in B cells. This is accompanied at the molecular level by underlying allelic changes in asynchronous replication timing patterns at the κ locus. These experiments may serve to define a new concept of stem cell plasticity.


Subject(s)
Alleles , Cell Lineage , Gene Rearrangement, B-Lymphocyte, Light Chain/genetics , Immunoglobulin kappa-Chains/genetics , Precursor Cells, B-Lymphoid/cytology , Precursor Cells, B-Lymphoid/metabolism , Animals , Chromatin Immunoprecipitation , Clone Cells/cytology , Clone Cells/immunology , Clone Cells/metabolism , DNA Replication Timing , Female , Hematopoiesis , Humans , Immunoglobulin kappa-Chains/immunology , Male , Mice , Mice, Inbred BALB C , Models, Animal , Models, Immunological , Precursor Cells, B-Lymphoid/immunology , Stochastic Processes
3.
Nat Immunol ; 8(7): 715-22, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17546032

ABSTRACT

Monoallelic demethylation and rearrangement control allelic exclusion of the immunoglobulin kappa-chain locus (Igk locus) in B cells. Here, through the introduction of pre-rearranged Igk genes into their physiological position, the critical rearrangement step was bypassed, thereby generating mice producing B cells simultaneously expressing two different immunoglobulin-kappa light chains. Such 'double-expressing' B cells still underwent monoallelic demethylation at the Igk locus, and the demethylated allele was the 'preferred' substrate for somatic hypermutation in each cell. However, methylation itself did not directly inhibit the activation-induced cytidine-deaminase reaction in vitro. Thus, it seems that the epigenetic mechanisms that initially bring about monoallelic variable-(diversity)-joining rearrangement continue to be involved in the control of antibody diversity at later stages of B cell development.


Subject(s)
Alleles , B-Lymphocytes/immunology , B-Lymphocytes/metabolism , Gene Rearrangement, B-Lymphocyte , Immunoglobulin kappa-Chains/genetics , Somatic Hypermutation, Immunoglobulin , Animals , Antibody Diversity/genetics , DNA Methylation , Epigenesis, Genetic/immunology , Genetic Markers , Humans , Immunoglobulin Variable Region/biosynthesis , Immunoglobulin Variable Region/genetics , Immunoglobulin kappa-Chains/biosynthesis , Mice , Mice, Transgenic
4.
J Immunol ; 177(9): 5767-74, 2006 Nov 01.
Article in English | MEDLINE | ID: mdl-17056499

ABSTRACT

The immune system generates highly diverse AgRs of different specificities from a pool of designated genomic loci, each containing large arrays of genes. Ultimately, each B or T cell expresses a receptor of a single type on its surface. Immune evasion by the malaria parasite Plasmodium falciparum is mediated by the mutually exclusive expression of a single member of the var family of genes, which encodes variant surface Ags. In this review, we discuss the similarities as well as the unique characteristics of the epigenetic mechanisms involved in the establishment of mutually exclusive expression in the immune and parasite systems.


Subject(s)
Antigenic Variation/genetics , Epigenesis, Genetic , Gene Rearrangement, B-Lymphocyte , Malaria, Falciparum/immunology , Plasmodium falciparum/pathogenicity , Protozoan Proteins/genetics , Animals , Immunoglobulins/genetics , Malaria, Falciparum/genetics , Mice , Plasmodium falciparum/genetics
5.
J Immunol ; 174(1): 110-8, 2005 Jan 01.
Article in English | MEDLINE | ID: mdl-15611233

ABSTRACT

Eosinophils are present in parasitic, allergic, various immunological, and malignant disorders as well as in a variety of idiopathic hypereosinophilic syndromes. However, their exact role in some of these conditions remains elusive. They can be activated both in vivo and in vitro by various agonists, such as Igs, lipid mediators, and cytokines. By phenotyping the surface of the eosinophils, it may be possible to better define their function(s) in different pathophysiological settings. In the present work we screened eosinophils with a panel of Abs recognizing CD2 subfamily receptors usually present on a number of hemopoietic cells. We have demonstrated that human peripheral blood eosinophils, but not basophils or neutrophils, express NTB-A. In addition eosinophils express 2B4, CD84, CD58, and CD48, but not signaling lymphocytic activation molecule or CD2, on their surface (FACS). Cross-linking of 2B4 on eosinophils elicited a significant release of eosinophil peroxidase (30 min), IFN-gamma, and IL-4 (18 h). Moreover, activation of eosinophils via 2B4 induced eosinophil-mediated cytotoxicity toward two malignant cell lines, i.e., mouse mastocytoma P815 and EBV-infected 721.221 B cell lines. Cross-linking of 2B4 on the surface of eosinophils or pervenadate treatment elicited ERK and tyrosine phosphorylation, respectively. Furthermore, we showed that eosinophils express slam-associated protein. The demonstration that human eosinophils express a functional 2B4 receptor indicates a broader role for these cells in health and disease.


Subject(s)
Antigens, CD/metabolism , Eosinophils/immunology , Membrane Glycoproteins/metabolism , Receptors, Immunologic/metabolism , Animals , Antigens, CD/immunology , Basophils/immunology , Basophils/metabolism , Blotting, Western , CD48 Antigen , CD58 Antigens/immunology , CD58 Antigens/metabolism , Cells, Cultured , Cytotoxicity Tests, Immunologic , Eosinophil Peroxidase/immunology , Eosinophil Peroxidase/metabolism , Eosinophils/metabolism , Flow Cytometry , Glycoproteins/immunology , Glycoproteins/metabolism , Humans , Immunoglobulins/immunology , Immunoglobulins/metabolism , Immunophenotyping , Immunoprecipitation , Interferon-gamma/immunology , Interferon-gamma/metabolism , Interleukin-4/immunology , Interleukin-4/metabolism , Neutrophils/immunology , Neutrophils/metabolism , Receptors, Cell Surface , Reverse Transcriptase Polymerase Chain Reaction , Signaling Lymphocytic Activation Molecule Family , Signaling Lymphocytic Activation Molecule Family Member 1
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