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1.
J Prosthodont ; 2024 Mar 19.
Article in English | MEDLINE | ID: mdl-38502779

ABSTRACT

PURPOSE: The aim of this study was to assess Candida albicans attachment on conventionally fabricated (polymethylmethacrylate, PMMA), CAD-CAM milled, and 3D-printed acrylic resin bases pre- and post-simulated thermal aging, along with examining material surface changes after aging. MATERIALS AND METHODS: Forty-six samples (10 mm × 10 mm × 2 mm) for each of four material groups (conventional heat-polymerized PMMA, CAD-CAM milled acrylic resin base, CAD-CAM 3D-printed methacrylate resin base, CAD-CAM 3D-printed urethane methacrylate resin base) were subjected to 0, 1, or 2 years of simulated thermal aging. Microscopic images were taken before and after aging, and C. albicans attachment was quantified using cell proliferation assay (XTT). Statistical analysis employed analysis of variance (α = 0.05). RESULTS: Two-way factorial analysis showed no significant differences based on acrylic resin type or thermal aging (p = 0.344 and p = 0.091 respectively). However, C. albicans attachment significantly differed between 0- and 2-year thermally aged groups (p = 0.004), mainly due to elevated initial attachments on CAD-CAM milled acrylic resin base and CAD-CAM 3D-printed urethane methacrylate resin base. CONCLUSIONS: Regardless of the fabrication technique and material combination, no significant differences were found in C. albicans adhesion pre- or post- thermal aging. Milled and 3D-printed bases compared favorably with heat- polymerized PMMA in their affinity for C. albicans attachment and surface characteristics after aging. These findings indicate that the risk of patients developing denture stomatitis might not be linked to the type of acrylic resin or fabrication method used.

2.
PeerJ ; 12: e16654, 2024.
Article in English | MEDLINE | ID: mdl-38313033

ABSTRACT

Anthropogenic activities increase sediment suspended in the water column and deposition on reefs can be largely dependent on colony morphology. Massive and plating corals have a high capacity to trap sediments, and active removal mechanisms can be energetically costly. Branching corals trap less sediment but are more susceptible to light limitation caused by suspended sediment. Despite deleterious effects of sediments on corals, few studies have examined the molecular response of corals with different morphological characteristics to sediment stress. To address this knowledge gap, this study assessed the transcriptomic responses of branching and massive corals in Florida and Hawai'i to varying levels of sediment exposure. Gene expression analysis revealed a molecular responsiveness to sediments across species and sites. Differential Gene Expression followed by Gene Ontology (GO) enrichment analysis identified that branching corals had the largest transcriptomic response to sediments, in developmental processes and metabolism, while significantly enriched GO terms were highly variable between massive corals, despite similar morphologies. Comparison of DEGs within orthogroups revealed that while all corals had DEGs in response to sediment, there was not a concerted gene set response by morphology or location. These findings illuminate the species specificity and genetic basis underlying coral susceptibility to sediments.


Subject(s)
Anthozoa , Animals , Anthozoa/genetics , Coral Reefs , Gene Expression Profiling , Transcriptome/genetics , Water
3.
J Phys Chem Lett ; 14(23): 5283-5296, 2023 Jun 15.
Article in English | MEDLINE | ID: mdl-37266968

ABSTRACT

Physicists revolutionized the scientific world when they invented the laser in 1960. During the next two decades, fruitful interplay occurred between theoreticians and experimentalists seeking progress in laser-selective chemistry. In the Early Era, defined as 1960∼1985, scientists gradually realized the immense complexity of the problem of performing tailored manipulations at the molecular scale. However, their efforts opened the doors to a new, broader scientific field of research called quantum control which developed in the Modern Era, defined as 1985 to the present time. This Perspective aims to show that the roots of quantum control may be linked to endeavors to manipulate chemical reactions with lasers and thus reaches as far back as the invention of the laser in 1960. We will emphasize the role of advancing technology, the prescience in the questions raised by researchers, and the role of interdisciplinary research. The Perspective concludes with an assessment of what was achieved in the Early Era.

4.
Phys Med ; 90: 30-39, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34530213

ABSTRACT

PURPOSE: To assess the interplay effect amplitude between different planned MU distributions and respiratory patterns in the CyberKnife system when treating moving targets with static tracking technique. METHODS: Small- and Large-Respiratory Motions (SRM and LRM) differing in amplitude and frequency were simulated in a semi-anthropomorphic dynamic thorax phantom. The interplay effect was evaluated for both respiration motions in terms of GTV coverage and conformity for three plans designed with an increasing range of MU per beam (small, medium and large). Each plan was delivered three times changing the initial beam-on phase to assess the inter-fraction variation. Dose distributions were measured using radiochromic films placed in the GTV axial and sagittal planes. RESULTS: Generally, SRM plans gave higher GTV coverage and were less dependent on beam-on phases than LRM plans. For SRM (LRM) plans, the GTV coverage ranged from 95.2% to 99.7% (85.9% to 99.8%). Maximum GTV coverage was found for large MU plans in SRM and for small MU plans in LRM. Minimum GTV coverage was found for medium MU plans for both SRM and LRM. For SRM plans, dose conformity decreased with increasing MU range while the variation was reduced for LRM plans. Large MU plans reduced the inter-fraction variation for SRM and LRM. CONCLUSIONS: We confirmed the interplay effect between target motion and beam irradiation time for CyberKnife static tracking. Plans with large MU per beam improved the GTV coverage for small motion amplitude and the inter-fraction dose variation for large motion amplitude.


Subject(s)
Lung Neoplasms , Radiosurgery , Radiotherapy, Intensity-Modulated , Humans , Lung Neoplasms/surgery , Motion , Phantoms, Imaging , Radiotherapy Dosage , Radiotherapy Planning, Computer-Assisted , Respiration
5.
Sci Rep ; 11(1): 3423, 2021 02 09.
Article in English | MEDLINE | ID: mdl-33564085

ABSTRACT

Corals in nearshore marine environments are increasingly exposed to reduced water quality, which is the primary local threat to Hawaiian coral reefs. It is unclear if corals surviving in such conditions have adapted to withstand sedimentation, pollutants, and other environmental stressors. Lobe coral populations from Maunalua Bay, Hawaii showed clear genetic differentiation between the 'polluted, high-stress' nearshore site and the 'less polluted, lower-stress' offshore site. To understand the driving force of the observed genetic partitioning, reciprocal transplant and common-garden experiments were conducted to assess phenotypic differences between these two populations. Physiological responses differed significantly between the populations, revealing more stress-resilient traits in the nearshore corals. Changes in protein profiles highlighted the inherent differences in the cellular metabolic processes and activities between the two; nearshore corals did not significantly alter their proteome between the sites, while offshore corals responded to nearshore transplantation with increased abundances of proteins associated with detoxification, antioxidant defense, and regulation of cellular metabolic processes. The response differences across multiple phenotypes between the populations suggest local adaptation of nearshore corals to reduced water quality. Our results provide insight into coral's adaptive potential and its underlying processes, and reveal potential protein biomarkers that could be used to predict resiliency.


Subject(s)
Acclimatization , Anthozoa , Coral Reefs , Animals , Anthozoa/genetics , Anthozoa/growth & development , Hawaii
6.
J Med Imaging (Bellingham) ; 7(4): 045501, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32743016

ABSTRACT

Purpose: Visual search using volumetric images is becoming the standard in medical imaging. However, we do not fully understand how eye movement strategies mediate diagnostic performance. A recent study on computed tomography (CT) images showed that the search strategies of radiologists could be classified based on saccade amplitudes and cross-quadrant eye movements [eye movement index (EMI)] into two categories: drillers and scanners. Approach: We investigate how the number of times a radiologist scrolls in a given direction during analysis of the images (number of courses) could add a supplementary variable to use to characterize search strategies. We used a set of 15 normal liver CT images in which we inserted 1 to 5 hypodense metastases of two different signal contrast amplitudes. Twenty radiologists were asked to search for the metastases while their eye-gaze was recorded by an eye-tracker device (EyeLink1000, SR Research Ltd., Mississauga, Ontario, Canada). Results: We found that categorizing radiologists based on the number of courses (rather than EMI) could better predict differences in decision times, percentage of image covered, and search error rates. Radiologists with a larger number of courses covered more volume in more time, found more metastases, and made fewer search errors than those with a lower number of courses. Our results suggest that the traditional definition of drillers and scanners could be expanded to include scrolling behavior. Drillers could be defined as scrolling back and forth through the image stack, each time exploring a different area on each image (low EMI and high number of courses). Scanners could be defined as scrolling progressively through the stack of images and focusing on different areas within each image slice (high EMI and low number of courses). Conclusions: Together, our results further enhance the understanding of how radiologists investigate three-dimensional volumes and may improve how to teach effective reading strategies to radiology residents.

7.
Med Phys ; 47(9): 3845-3851, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32594530

ABSTRACT

PURPOSE: To validate a delivery quality assurance (DQA) protocol for tomotherapy based on the measurement of the leaf open times (LOTs). In addition, to show the correlation between the mean relative LOT discrepancy and the dose deviation in the planning target volume (PTV). MATERIALS AND METHODS: We used a LOT measurement algorithm presented in a previous work on our two tomotherapy treatment units (TOMO1 and TOMO2). We generated TomoPhant plans with intentional random LOT discrepancies following Gaussian distributions of -6%, -4%, -2%, 2%, 4%, and 6%. We irradiated them on the Cheese Phantom with two ion chambers and collected the raw data on both our treatment units. Using the raw data, we measured the actual LOTs and verified that the induced discrepancies were highlightable. Then, we calculated the actual dose using Accuray's standalone dose calculator and verified that the calculated dose agreed with the ion chamber measurement. We randomly chose 60 clinical treatment plans, delivered them in air, and collected the raw detector data. We measured the actual LOTs from the raw data and calculated the corresponding dose distributions using Accuray's standalone dose calculator. We assessed the Pearson coefficient correlation of the deviation between expected and actual dose in the PTV (a) with the mean relative LOT discrepancy and (b) with the γ-index pass rate for different tolerances. RESULTS: The mean relative discrepancy between actual (measured by the algorithm) and expected LOTs on the modified TomoPhant plans was 1.10 ± 0.05% on TOMO1 and 0.02 ± 0.03% on TOMO2, respectively. The agreement between measured and calculated dose was 0.2 ± 0.3% on TOMO1 and 0.1 ± 0.3% on TOMO2, respectively. On clinical plans, the means of the relative LOT discrepancies ranged from -3.0 % to 1.4%. The dose deviation in the PTVs ranged from -1.6% to 2.4%. The Pearson coefficient correlation between the mean relative LOT discrepancy and the dose deviation in the PTV was 0.76 (P ≈ 10-15 ) on TOMO1 and 0.65 (P ≈ 10-10 ) on TOMO2, respectively. There was no correlation between the γ-index pass rate and the dose deviation in the PTV. CONCLUSION: The method made it possible to measure and to correctly highlight the LOT discrepancies on the TomoPhant plans. The dose subsequently calculated was accurate. On clinical plans, the mean LOT discrepancy correlated with the dose deviation in the PTV. This makes the mean LOT discrepancy a handy indicator of the plan quality.


Subject(s)
Radiotherapy Planning, Computer-Assisted , Radiotherapy, Intensity-Modulated , Phantoms, Imaging , Plant Leaves , Radiotherapy Dosage
8.
J Med Imaging (Bellingham) ; 7(2): 022411, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32064303

ABSTRACT

Purpose: With three-dimensional (3-D) images displayed as stacks of 2-D images, radiologists rely more heavily on vision away from their fixation point to visually process information, guide eye movements, and detect abnormalities. Thus the ability to detect targets away from the fixation point, commonly characterized as the useful field of view (UFOV), becomes critical for these 3-D imaging modalities. We investigate how the UFOV, defined as the eccentricity, in which detection performance degrades to a given probability, varies across imaging modalities and targets. Approach: We measure the detectability of different targets at various distances from gaze locations for single slices of liver computed tomography (CT), 2-D digital mammograms (DM), and single slices of digital breast tomosynthesis (DBT) cases. Observers with varying expertise were instructed to maintain their gaze at a point while a short display of the image was flashed and an eye tracker verified observer's steady fixation. Display times were 200 and 1000 ms for CT images and 500 ms for DM and DBT images. Results: We find variations in the UFOV from 9 to 12 deg for liver CT to as small as 2.5 to 5 deg for calcification clusters in breast images (DM and DBT). We compare our results to those reported in the literature for lung nodules and discuss the differences across methods used to measure the UFOV, their dependence on case selection/task difficulty, viewing conditions, and observer expertise. We propose a complementary measure defined in terms of performance degradation relative to the peak foveal performance (relative-UFOV) to circumvent UFOV's variations with case selection/task difficulty. Conclusion: Our results highlight the variations in the UFOV across imaging modalities, target types, observer expertise, and measurement methods and suggest an additional relative-UFOV measure to more thoroughly characterize the detection performance away from point of fixation.

9.
Med Phys ; 47(5): 2309-2316, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32078167

ABSTRACT

PURPOSE: The purpose of this study was to calculate dose distributions from CyberKnife image-guided radiation therapy (IGRT) for brain, H&N, lung, and pelvis treatment regions and use them to extract the corresponding effective dose and estimate-related risk. METHODS: We developed a CyberKnife IGRT kV beam model in a standard treatment planning system and validated it against measurements in heterogeneous phantoms. Five brain, five head and neck, five thorax, and 10 (five male and five female) pelvis patient computed tomographies (CTs) were contoured. The dose distribution resulting from different CyberKnife IGRT protocols was calculated. From them, the effective dose was calculated according to ICRP publication Nr 103, using the average dose to contoured organs. The corresponding risk factors were calculated. Entrance surface dose (ESD) was also calculated and compared with existing data. RESULTS: The maximum effective dose produced by CyberKnife IGRT protocols was 0.8 mSv (brain), 1.9 mSv (H&N), 20.2 (pelvis), and 42.4 mSv (thorax) per fraction for a risk estimate of 0.004% (brain), 0.01% (H&N), 0.1% (pelvis), and 0.2% (thorax). Calculated ESD were compatible with existing data. CONCLUSIONS: Dose calculation models for CyberKnife IGRT kV beams were implemented in a clinical treatment planning system and validated in water and heterogeneous phantoms. We determined the effective dose and the related risk estimate resulting from CyberKnife IGRT protocols for brain, head and neck, thorax, and pelvis cases. The effective doses calculated for CyberKnife IGRT protocols were similar to those obtained for cone beam CT protocols on conventional C-arm linear accelerators, except for extreme irradiation conditions for thorax cases (140 kV X-ray tube tension).


Subject(s)
Radiation Dosage , Radiotherapy, Image-Guided/methods , Humans , Organs at Risk/radiation effects , Radiotherapy Dosage , Radiotherapy Planning, Computer-Assisted , Radiotherapy, Image-Guided/adverse effects
10.
Phys Med ; 64: 230-237, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31515024

ABSTRACT

PURPOSE: A novel optimization algorithm (VOLO™) for robotic radiosurgery in the Precision™ treatment planning system was evaluated for different SRS/SBRT treatments and compared with the previous Sequential Optimization (SO) algorithm. MATERIALS AND METHODS: Fifty cases of brain, spine, prostate and lung tumors previously optimized with SO, were re-planned with VOLO™ algorithm keeping the same prescription, collimator type and size, optimization shells, and blocking structures. The dosimetric comparison involved target coverage, conformity (CI), gradient (GI) and homogeneity indexes, specific indicators of dose to OARs and number of nodes, beams, MU and delivery time. For brain only, plans were IRIS- and MLC-based (10 each). The remaining 30 plans were all IRIS-based. RESULTS: VOLO™ optimization was significantly superior for target coverage for prostate and spine, CI for brain, and for brain and urethra dose sparing. SO gave significantly better results for GI for prostate. VOLO™ showed a significantly steeper dose fall-off for brain MLC-based, while for prostate and spine SO was superior. For IRIS-based plans, VOLO™ significantly reduced the nodes (36%), beams (14%), and MU (31%). This led to an average reduction of delivery time of 20% (from 8% for brain to 30% for prostate). For MLC-based plans, VOLO™ significantly increased the nodes and beams (42%) keeping the same number of MU. The averaged delivery time increased by 18%. CONCLUSIONS: With respect to SO, VOLO™ optimization algorithm provided better results in terms of delivery time for IRIS-based and of quality of dose distribution for MLC-based plans, respectively.


Subject(s)
Algorithms , Radiosurgery , Robotic Surgical Procedures , Humans , Lung Neoplasms/pathology , Lung Neoplasms/radiotherapy , Male , Neoplasm Metastasis , Prostatic Neoplasms/pathology , Prostatic Neoplasms/radiotherapy , Radiometry , Radiotherapy Planning, Computer-Assisted
11.
J Med Imaging (Bellingham) ; 6(2): 025501, 2019 Apr.
Article in English | MEDLINE | ID: mdl-31131292

ABSTRACT

Task-based image quality procedures in CT that substitute a human observer with a model observer usually use single-slice images with uniform backgrounds from homogeneous phantoms. However, anatomical structures and inhomogeneities in organs generate noise that can affect the detection performance of human observers. The purpose of this work was to assess the impact of background type, uniform or liver, and the viewing modality, single- or multislice, on the detection performance of human and model observers. We collected abdominal CT scans from patients and homogeneous phantom scans in which we digitally inserted low-contrast signals that mimicked a liver lesion. We ran a rating experiment with the two background conditions with three signal sizes and three human observers presenting images in two reading modalities: single- and multislice. In addition, channelized Hotelling observers (CHO) for single- and multislice detection were implemented and evaluated according to their degree of correlation with the human observer performance. For human observers, there was a small but significant improvement in performance with multislice compared to the single-slice viewing mode. Our data did not reveal a significant difference between uniform and anatomical backgrounds. Model observers demonstrated a good correlation with human observers for both viewing modalities. Human observers have very similar performances in both multi- and single-slice viewing mode. It is therefore preferable to use single-slice CHO as this model is computationally more tractable than multislice CHO. However, using images from a homogeneous phantom can result in overestimating image quality as CHO performance tends to be higher in uniform than anatomical backgrounds, while human observers have similar detection performances.

12.
Med Phys ; 46(5): 1963-1971, 2019 May.
Article in English | MEDLINE | ID: mdl-30810233

ABSTRACT

PURPOSE: We developed an algorithm to measure the leaf open times (LOT) from the on-board detector (OBD) pulse-by-pulse data in tomotherapy. We assessed the feasibility of measuring the LOTs in dynamic jaw mode and validated the algorithm on machine QA and clinical data. Knowledge of the actual LOTs is a basis toward calculating the delivered dose and performing efficient phantom-less delivery quality assurance (DQA) controls of the multileaf collimator (MLC). In tomotherapy, the quality of the delivered dose depends on the correct performance of the MLC, hence on the accuracy of the LOTs. MATERIALS AND METHODS: In the detector signal, the period of time during which a leaf is open corresponds to a high intensity region. The algorithm described here locally normalizes the detector signal and measures the FWHM of the high intensity regions. The Daily QA module of the TomoTherapy Quality Assurance (TQA) tool measures LOT errors. The Daily QA detector data were collected during 9 days on two tomotherapy units. The errors yielded by the method were compared to these reported by the Daily QA module. In addition, clinical data were acquired on the two units (25 plans in total), in air without attenuation material in the beam path and in vivo during a treatment fraction. The study included plans with fields of all existing sizes (1.05, 2.51, 5.05 cm). The collimator jaws were in dynamic mode (TomoEDGETM ). The feasibility of measuring the LOTs was assessed with respect to the jaw aperture. RESULTS: The mean discrepancy between LOTs measured by the algorithm and those measured by TQA was of 0 ms, with a standard deviation of 0.3 ms. The LOT measured by the method had thus an uncertainty of 1 ms with a confidence level of 99%. In 5.05 cm dynamic jaw procedures, the detector is in the beam umbra at the beginning and at the end of the delivery. In such procedures, the algorithm could not measure the LOTs at jaw apertures between 7 and maximum 12.4 mm. Otherwise, no measurement error due to the jaw movement was observed. No LOT measurement difference between air and in vivo data was observed either. CONCLUSION: The method we propose is reliable. It can equivalently measure the LOTs from data acquired in air or in vivo. It handles fully the static procedures and the 2.51 cm dynamic procedures. It handles partially the 5.05 cm dynamic procedures. The limitation was evaluated with respect to the jaw aperture.


Subject(s)
Algorithms , Neoplasms/radiotherapy , Quality Assurance, Health Care/standards , Radiometry/instrumentation , Radiotherapy Planning, Computer-Assisted/methods , Radiotherapy, Intensity-Modulated/instrumentation , Humans , Radiometry/methods , Radiotherapy Dosage , Radiotherapy, Intensity-Modulated/methods
13.
Endocr Pract ; 25(1): 16-22, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30289305

ABSTRACT

OBJECTIVE: To evaluate the relationship between various biochemical parameters in patients with primary hyperparathyroidism (PHPT) with positive and negative technetium-99 sestamibi (Tc) parathyroid scans performed with single-photon emission computed tomography/computed tomography (SPECT/CT). METHODS: This retrospective analysis was used to develop a logistic probability model. It included 218 patients with PHPT. The main outcome measures were serum total calcium, ionized calcium, intact parathyroid hormone (PTH), albumin, alkaline phosphatase, phosphate, 25-hydroxy vitamin D, 1,25-dihydroxy vitamin D, 24-h urinary calcium levels, and parathyroid adenoma weight. RESULTS: Individually, using cut-off levels of 6.0 mg/dL for ionized calcium, 3.0 mg/dL for phosphate, and 90 pg/mL for intact PTH, we found that 91.3% ( P = .005), 70.7% ( P = .004) and 87.90% ( P = .023) of the patients had a positive Tc scan with their corresponding strengths of associations in the parentheses. Similar significant associations were sustained in multivariate setting for serum ionized calcium ( P = .015), phosphate ( P = .016), and intact PTH ( P = .028). A logistic probability model was designed to predict the probability of being positive for Tc scan given a set of covariates. CONCLUSION: There are significant associations between the levels of serum ionized calcium, phosphate, intact PTH, and Tc scan positivity. Further studies with larger patient populations are needed. ABBREVIATIONS: BMI = body mass index; CT = computed tomography; CV = coefficient variation; DXA = dual-energy x-ray absorptiometry; MRI = magnetic resonance imaging; PHPT = primary hyperparathyroidism; PPV = positive predictive value; PTH = parathyroid hormone; SPECT = single-photon emission computed tomography; Tc = technetium-99 sestamibi.


Subject(s)
Hyperparathyroidism, Primary , Calcium , Humans , Parathyroid Hormone , Parathyroid Neoplasms , Phosphates , Retrospective Studies , Technetium Tc 99m Sestamibi
14.
Infect Genet Evol ; 67: 136-144, 2019 01.
Article in English | MEDLINE | ID: mdl-30395998

ABSTRACT

Collections of biological samples held by hospitals represent invaluable resources for conducting retrospective evolutionary studies of chronic infections. Using high-throughput sequencing, those collections permit analysis of within-host genetic diversity over long follow-up periods, and allow a better understanding of resistance to treatment regimes during disease evolution. Here, we studied the evolution of hepatitis C virus (HCV) populations in two patients with an absence of response to dual therapies. We implemented amplicon sequencing to survey genomic variation at the Core and NS5B regions of HCV over a period of 13 years from blood samples obtained at multiple time points. We observed mixed infection by multiple HCV genotypes in both patients. Genetic heterogeneity and sample composition analysis provided information about the changes in viral population over the course of clinical treatment, with NS5B experiencing an increase in diversity after treatment initiation. Secondary infections were estimated to predate treatment year, and our results pointed towards diversifying selection occurring post-treatment, acting on standing genomic variation and maintaining high genetic heterogeneity during infection. For these two patients infected with multiple HCV genotypes, the maintenance of viral diversity was explained with the hypothesis of soft selective sweep started at the same time as antiviral treatment was initiated.


Subject(s)
Evolution, Molecular , Genetic Variation , Hepacivirus/genetics , Hepatitis C/virology , High-Throughput Nucleotide Sequencing , Host-Pathogen Interactions , Drug Resistance, Viral , Genotype , Hepacivirus/classification , Humans , Phylogeny , Retrospective Studies , Selection, Genetic , Sequence Analysis, DNA , Viral Nonstructural Proteins/genetics
15.
J Chem Phys ; 149(5): 054201, 2018 Aug 07.
Article in English | MEDLINE | ID: mdl-30089377

ABSTRACT

We propose a method for interactively controlling multi-species atomic and molecular systems with incoherent light. The technique is referred to as shaped incoherent light for control (SILC), which entails dynamically tailoring the spectrum of a broadband incoherent source to control atomic and molecular scale kinetics. Optimal SILC light patterns can be discovered with adaptive learning techniques where the system's observed response is fed back to the control for adjustment aiming to improve the objective. To demonstrate this concept, we optimized a SILC source to optimally control the evolving hue in near-IR to visible upconverting phosphors, which share many similarities with chemical reaction kinetics including non-linear behavior. Thus, the results suggest that SILC may be a valuable tool for the control of chemical kinetics with tailored incoherent light.

16.
Med Phys ; 45(7): 3019-3030, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29704868

ABSTRACT

PURPOSE: The task-based assessment of image quality using model observers is increasingly used for the assessment of different imaging modalities. However, the performance computation of model observers needs standardization as well as a well-established trust in its implementation methodology and uncertainty estimation. The purpose of this work was to determine the degree of equivalence of the channelized Hotelling observer performance and uncertainty estimation using an intercomparison exercise. MATERIALS AND METHODS: Image samples to estimate model observer performance for detection tasks were generated from two-dimensional CT image slices of a uniform water phantom. A common set of images was sent to participating laboratories to perform and document the following tasks: (a) estimate the detectability index of a well-defined CHO and its uncertainty in three conditions involving different sized targets all at the same dose, and (b) apply this CHO to an image set where ground truth was unknown to participants (lower image dose). In addition, and on an optional basis, we asked the participating laboratories to (c) estimate the performance of real human observers from a psychophysical experiment of their choice. Each of the 13 participating laboratories was confidentially assigned a participant number and image sets could be downloaded through a secure server. Results were distributed with each participant recognizable by its number and then each laboratory was able to modify their results with justification as model observer calculation are not yet a routine and potentially error prone. RESULTS: Detectability index increased with signal size for all participants and was very consistent for 6 mm sized target while showing higher variability for 8 and 10 mm sized target. There was one order of magnitude between the lowest and the largest uncertainty estimation. CONCLUSIONS: This intercomparison helped define the state of the art of model observer performance computation and with thirteen participants, reflects openness and trust within the medical imaging community. The performance of a CHO with explicitly defined channels and a relatively large number of test images was consistently estimated by all participants. In contrast, the paper demonstrates that there is no agreement on estimating the variance of detectability in the training and testing setting.


Subject(s)
Image Processing, Computer-Assisted , Laboratories , Tomography, X-Ray Computed , Observer Variation , Uncertainty
17.
Food Funct ; 9(2): 1112-1122, 2018 Feb 21.
Article in English | MEDLINE | ID: mdl-29359227

ABSTRACT

In the elderly, masticatory function often presents failure in certain oral tasks due to impairment such as decline in muscular force, jaw or tongue motility, neuro-muscular coordination, tooth damage, malocclusion and saliva production. Great disparity is observed in the various and potentially cumulative oral declines that occur with ageing. Such difficulties may have an impact on food consumption and nutritional status. To obtain better understanding of the consequences of several oral deficiencies, a series of swallowable boluses were prepared in vitro with the AM2 masticator apparatus with normal and deficient programming. Physiological normal mastication (NM) was simulated using in vivo data from healthy subjects. Chewing deficiencies were reproduced by alteration of NM programming to perform different levels and combinations of force loss, lack of saliva and decrease in the motility of oral elements. Poultry meatballs were used as test-food. Particle size distribution in the food bolus was measured by sieving and rheological features (hardness, cohesiveness and elasticity) were assessed with a TPA test. Compared to the NM outcome, significant and gradual deterioration of the food bolus was observed and associated with alteration in force, saliva and motility. Combinations of several failures led to greater or cumulative deficiencies in swallowable bolus properties. For the elderly presenting a high prevalence of various oral injuries, tailoring textured food cannot be ignored as a solution for remedying deficiencies and favoring the formation of a safe-swallowable bolus, which is an essential vector of nutrients. Knowing the impacts of oral injuries on the food bolus is obviously a requisite for developing diet strategies, including nutritional items for specific populations.


Subject(s)
Aging/physiology , Mastication , Mouth/physiology , Animals , Chickens , Food Analysis , Food Preferences , Hardness , Humans , Meat/analysis , Models, Biological , Particle Size
18.
Med Phys ; 44(9): e153-e163, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28901621

ABSTRACT

PURPOSE: We sought to compare objectively computed tomography (CT) scanner performance for three clinically relevant protocols using a task-based image quality assessment method in order to assess the potential for radiation dose reduction. METHODS: Four CT scanners released between 2003 and 2007 by different manufacturers were compared with four CT scanners released between 2012 and 2014 by the same manufacturers using ideal linear model observers (MO): prewhitening (PW) MO and channelized Hotelling (CHO) MO with Laguerre-Gauss channels for high-contrast spatial resolution and low-contrast detectability (LCD) performance, respectively. High-contrast spatial resolution was assessed using a custom-made phantom that enabled the computation of the target transfer function (TTF) and noise power spectrum (NPS). Low-contrast detectability was assessed using a commercially available anthropomorphic abdominal phantom providing equivalent diameters of 24, 29.6, and 34.6 cm. Three protocols were reviewed: a head (trauma) and an abdominal (urinary stones) protocol were applied to assess high-contrast spatial resolution performance; and another abdominal (focal liver lesions) protocol was applied for LCD. The liver protocol was tested using fixed and modulated tube currents. The PW MO was proposed for assessing high-contrast detectability performance of the various CT scanners. RESULTS: Compared with older generation CT scanners, three newer systems displayed significant improvements in high-contrast detectability over that of their predecessors. A fourth, newer system had lower performance. The CHO MO was appropriate for assessing LCD performance and revealed that an excellent level of image quality could be obtained with newer scanners at significantly lower dose levels. CONCLUSIONS: This study shows that MO can objectively benchmark CT scanners using a task-based image quality method, thus helping to estimate the potential for further dose reductions offered by the latest systems. Such an approach may be useful for adequately and quantitatively comparing clinically relevant image quality among various scanners.


Subject(s)
Radiation Dosage , Tomography Scanners, X-Ray Computed , Tomography, X-Ray Computed , Clinical Protocols , Humans , Phantoms, Imaging
19.
J Radiol Prot ; 37(4): 812-825, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28748829

ABSTRACT

AIM: The aim of this work was to assess the doses received by a diver exposed to a radiation source during maintenance work in the fuel transfer pool at a Swiss nuclear power plant, and to define whether the statutory limit was breached or not. METHOD: Onsite measurements were carried out and different scenarios were simulated using the MicroShield Software and the MCNPX Monte Carlo radiation transport code to estimate the activity of the irradiating object as well as the doses to the limbs and the effective dose delivered to the operator. RESULTS: The activity of the object was estimated to 1.8 TBq. From the various dose estimations, a conservative value of 7.5 Sv was proposed for the equivalent dose to the skin on the hands and an effective dose of 28 mSv. CONCLUSION: The use of different experimental and calculation methods allowed us to accurately estimate the activity of the object and the dose delivered to the diver, useful information for making a decision on the most appropriate scheme of follow up for the patient.


Subject(s)
Nuclear Power Plants , Occupational Exposure , Radiation Dosage , Adult , Computer Simulation , Humans , Male , Monte Carlo Method , Software , Switzerland
20.
Nat Commun ; 8: 14213, 2017 02 10.
Article in English | MEDLINE | ID: mdl-28186132

ABSTRACT

Ocean warming threatens corals and the coral reef ecosystem. Nevertheless, corals can be adapted to their thermal environment and inherit heat tolerance across generations. In addition, the diverse microbes that associate with corals have the capacity for more rapid change, potentially aiding the adaptation of long-lived corals. Here, we show that the microbiome of reef corals is different across thermally variable habitats and changes over time when corals are reciprocally transplanted. Exposing these corals to thermal bleaching conditions changes the microbiome for heat-sensitive corals, but not for heat-tolerant corals growing in habitats with natural high heat extremes. Importantly, particular bacterial taxa predict the coral host response in a short-term heat stress experiment. Such associations could result from parallel responses of the coral and the microbial community to living at high natural temperatures. A competing hypothesis is that the microbial community and coral heat tolerance are causally linked.


Subject(s)
Anthozoa/physiology , Bacteria/growth & development , Coral Reefs , Ecosystem , Thermotolerance/physiology , Adaptation, Physiological , Animals , Anthozoa/genetics , Bacteria/classification , Bacteria/genetics , Bacterial Proteins/metabolism , Genotype , Hot Temperature , Microbiota/genetics , Microbiota/physiology , Phylogeny , Population Dynamics , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Thermotolerance/genetics
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