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1.
Arkh Patol ; 86(3): 38-45, 2024.
Article in Russian | MEDLINE | ID: mdl-38881004

ABSTRACT

The article demonstrates a detailed analysis of the results of the rounds of quality control of immunohistochemical studies conducted by the Central Committee of the Immunohistochemical Quality Control Center of the Russian Medical Academy of Continuous Professional Education of the Ministry of Health of Russia in 2023. Typical shortcomings and errors in the immunohistochemical examination of various tumors have been identified and ways to eliminate them are given. Particular attention is paid to defining a panel of standard breast cancer markers and eliminating the shortcomings of immunohistochemical examination of markers of accompanying diagnosis.


Subject(s)
Immunohistochemistry , Quality Control , Russia , Humans , Academies and Institutes/standards , Biomarkers, Tumor , Female , Breast Neoplasms/pathology , Breast Neoplasms/diagnosis , Education, Medical, Continuing
2.
Biomed Chromatogr ; 38(7): e5874, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38587098

ABSTRACT

A sensitive and reliable LC-MS/MS method was developed and validated for the quantification of oxycodone and metabolites in human plasma. The method has a runtime of 6 min and a sensitivity of 0.1 µg/L for all analytes. Sample preparation consisted of protein precipitation. Separation was performed on a Kinetix biphenyl column (2.1 × 100 mm, 1.7 µm), using ammonium formate 5 mm in 0.1% aqueous formic acid and methanol LC-MS grade 100% in gradient elution at a flow rate of 0.4 ml/min. Detection was performed in multiple reaction monitoring mode using positive electrospray ionization. The method was linear over the calibration range of 0.1-25.0 µg/L for oxycodone, noroxycodone and noroxymorphone and 0.1-5.0 µg/L for oxymorphone. The method demonstrated good performance in terms of intra- and interday accuracy (86.5-110.3%) and precision (CV 1.7-9.3%). The criteria for the matrix effect were met (CV < 15%) except for noroxymorphone, for which an additional method was applied to compensate for the matrix effect. Whole blood samples were stable for 4 h at room temperature. Plasma samples were stable for 24 h at room temperature and 3 months at -20°C. Furthermore, the method was successfully applied in a pharmacokinetic drug interaction study of oxycodone and enzalutamide in patients with prostate cancer.


Subject(s)
Oxycodone , Tandem Mass Spectrometry , Humans , Tandem Mass Spectrometry/methods , Oxycodone/blood , Oxycodone/pharmacokinetics , Oxycodone/chemistry , Reproducibility of Results , Chromatography, Liquid/methods , Linear Models , Drug Interactions , Male , Morphinans/blood , Morphinans/pharmacokinetics , Morphinans/chemistry , Limit of Detection , Oxymorphone/blood , Oxymorphone/chemistry , Oxymorphone/pharmacokinetics , Sensitivity and Specificity , Drug Stability , Liquid Chromatography-Mass Spectrometry
3.
Neuromodulation ; 27(1): 59-69, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38127048

ABSTRACT

OBJECTIVES: Psychologic screening is often included as a mandatory component of evaluation of the impact of psychopathology disorders on the predicted outcome of spinal cord stimulation (SCS) for patients with chronic pain due to persistent spinal pain syndrome type 2 (PSPS type 2). The conclusion of such screenings can influence the decision to offer SCS therapy to a patient. However, evidence on the impact of psychopathology on SCS outcomes is still scarce. MATERIALS AND METHODS: To address this knowledge gap, we systematically reviewed the literature from 2009 to 2021 to explore the correlation between the presence of a psychopathological disorder and the predicted outcome of SCS in patients with PSPS type 2. The literature search was conducted using various online data bases with "failed back surgery syndrome," "psychopathology," and "spinal cord stimulation" used as essential keywords. The identified studies were organized in a Rayyan AI data base, and the quality was analyzed with the Critical Appraisal Skills Program tool. RESULTS: Our search generated the identification of 468 original articles, of which two prospective and four retrospective studies met our inclusion criteria. These studies reported pain relief, a reduction of symptoms of anxiety and depression, and an improvement in rumination on the Pain Catastrophizing Scale in patients with PSPS type 2 after SCS therapy. The studies also found contradictory outcomes measured using the Oswestry Disability Index, and in terms of the impact of psychopathological disorder on the clinical outcome and revision rate of the SCS system. CONCLUSION: In this systematic review, we found no convincing evidence that the presence of a psychopathological disorder affects the predicted outcome of SCS therapy in patients with PSPS type 2.


Subject(s)
Chronic Pain , Mental Disorders , Spinal Cord Stimulation , Humans , Treatment Outcome , Retrospective Studies , Prospective Studies , Chronic Pain/therapy , Spinal Cord
4.
Arkh Patol ; 85(6): 31-46, 2023.
Article in Russian | MEDLINE | ID: mdl-38010637

ABSTRACT

A detailed description of the methodological aspects of the evaluation of HER2-status in carcinomas of such localizations as the mammary gland, pancreas, salivary glands, stomach, colon, endometrium, bladder, lungs is presented. Approaches and criteria for assessing HER2 status from methodological and clinical points of view are analyzed. The data are systematized in tables for use in practical diagnostic work.


Subject(s)
Carcinoma , Receptor, ErbB-2 , Female , Humans , Receptor, ErbB-2/genetics , Biomarkers, Tumor , Carcinoma/pathology , Salivary Glands/pathology
5.
Arkh Patol ; 85(5): 5-12, 2023.
Article in Russian | MEDLINE | ID: mdl-37814844

ABSTRACT

OBJECTIVE: Study of PD-L1 expression in squamous and adenosquamous cell cervical cancer (CC) by immunohistochemical (IHC) method, assessment of the relationship between PD-L1 tumor status and its clinical and morphological characteristics, TILs, MSI/dMMR, and HPV tumor status. MATERIAL AND METHODS: Surgical material was obtained from 41 patients with CC, on which the expression of PD-L1, proteins of the MMR system and p16 was studied by the IHC method, the TILs index was determined. RESULTS: Positive PD-L1 status was found in 51.2% of the studied CC samples. In the study sample, the level of PD-L1 expression depended on the severity of lymphoid infiltration of the tumor (p=0.038), it was shown that a positive PD-L1 status of CC can be expected with a TILs value greater than or equal to 50%. The age of the patients, the histological variant of the tumor, the pT and pN stage, the presence of lymphovascular invasion, and the HPV status did not statistically significantly affect the level of PD-L1 expression, however, there was an association between the PD-L1 status and the grade of CC malignancy (p=0.027). The presence of the MSI/dMMR phenomenon was detected in a small percentage of carcinomas (4.9%), the PD-L1 status of these tumors was determined as positive. CONCLUSION: A positive PD-L1 status is determined in a significant number of cases of CC, regardless of most of the studied clinical and morphological characteristics; there is a statistically significant relationship between PD-L1 expression and the degree of tumor differentiation and TILs. It has been shown that CC with the MSI/dMMR phenomenon is characterized by a positive PD-L1 status. The authors consider it necessary to study the expression of PD-L1 in patients with cervical carcinomas in order to determine the possibility of prescribing personalized therapy with immune checkpoint inhibitors.


Subject(s)
Carcinoma , Papillomavirus Infections , Uterine Cervical Neoplasms , Female , Humans , Uterine Cervical Neoplasms/genetics , Uterine Cervical Neoplasms/therapy , B7-H1 Antigen/genetics , B7-H1 Antigen/metabolism , Biomarkers, Tumor/genetics , Immunotherapy
6.
Arkh Patol ; 85(4): 39-46, 2023.
Article in Russian | MEDLINE | ID: mdl-37530189

ABSTRACT

Updated 2023 guidelines from the College of American Pathologists (CAP) on immunohistochemical detection of human epidermal growth factor receptor type 2 (HER2), receptors of estrogen (ER) and progesterone (PgR), and the cell proliferation marker Ki-67 in breast cancer are presented. Attention is drawn to the emergence of two new terms «ER Low Positive¼ and «HER2 Low¼ to characterize tumors with low expression of estrogen receptors and HER2.


Subject(s)
Breast Neoplasms , Humans , Female , Breast Neoplasms/diagnosis , Receptor, ErbB-2/genetics , Receptor, ErbB-2/metabolism , Receptors, Estrogen/genetics , Receptors, Estrogen/metabolism , Receptors, Progesterone/genetics , Receptors, Progesterone/metabolism , Biomarkers, Tumor/genetics , Biomarkers, Tumor/metabolism
7.
Sci Total Environ ; 903: 166221, 2023 Dec 10.
Article in English | MEDLINE | ID: mdl-37572916

ABSTRACT

Tyre granulate used as infill for artificial turf is hailed by some as a good example of reuse, while others see it as a baleful means to dispose of discarded tyres. Because the particles are applied loosely to the surface, they will inevitably disperse into the environment. The possible environmental and health impacts of the particles are a source of societal concern. In response to this, policies to limit particle losses are being developed at the European level. To make informed decisions, data on the quantity of tyre granulate released into the environment are required. So far, however, there are no systematic reviews on or estimates of these losses. The aim of the present study was to identify the various pathways through which infill leaves a football turf and, subsequently, to estimate the quantity of infill leaving the turf by each of these pathways. Data on the pathways including the associated volumes were collected in a systematic literature review following the PRISMA method. The quality of the evidence reported in the retrieved literature was assessed using the GRADE method. The resulting pathways and corresponding quantities were captured in a mass balance. This study estimates that, without mitigation measures, approximately 950 kg/year (min. 570 kg/year, max. 2280 kg/year) of infill leaves the surface of an average artificial football turf via known pathways. Clearing snow can result in an additional loss of 830 kg/year (min. 200 kg/year, max. 2760 kg/year) of infill material. To mitigate the dispersion of infill, one could focus on snow removal, brushing and granulate picked up by players. Mitigation measures for these pathways are well-established and relatively easy to implement and maintain. Although the amount of granulate picked up from the turf by players is relatively small, the measure will promote environmental awareness among the players.

8.
Target Oncol ; 18(3): 441-450, 2023 05.
Article in English | MEDLINE | ID: mdl-37081309

ABSTRACT

BACKGROUND: Expensive novel anticancer drugs put a serious strain on healthcare budgets, and the associated drug expenses limit access to life-saving treatments worldwide. OBJECTIVE: We aimed to develop alternative dosing regimens to reduce drug expenses. METHODS: We developed alternative dosing regimens for the following monoclonal antibodies used for the treatment of lung cancer: amivantamab, atezolizumab, bevacizumab, durvalumab, ipilimumab, nivolumab, pembrolizumab, and ramucirumab; and for the antibody-drug conjugate trastuzumab deruxtecan. The alternative dosing regimens were developed by means of modeling and simulation based on the population pharmacokinetic models developed by the license holders. They were based on weight bands and the administration of complete vials to limit drug wastage. The resulting dosing regimens were developed to comply with criteria used by regulatory authorities for in silico dose development. RESULTS: We found that alternative dosing regimens could result in cost savings that range from 11 to 28%, and lead to equivalent pharmacokinetic exposure with no relevant increases in variability in exposure. CONCLUSIONS: Dosing regimens based on weight bands and the use of complete vials to reduce drug wastage result in less expenses while maintaining equivalent exposure. The level of evidence of our proposal is the same as accepted by regulatory authorities for the approval of alternative dosing regimens of other monoclonal antibodies in oncology. The proposed alternative dosing regimens can, therefore, be directly implemented in clinical practice.


Subject(s)
Antineoplastic Agents , Immunoconjugates , Lung Neoplasms , Humans , Antibodies, Monoclonal/pharmacology , Antibodies, Monoclonal/therapeutic use , Nivolumab , Immunoconjugates/pharmacology , Immunoconjugates/therapeutic use , Lung Neoplasms/drug therapy
9.
Arkh Patol ; 85(2): 5-12, 2023.
Article in Russian | MEDLINE | ID: mdl-37053347

ABSTRACT

OBJECTIVE: To study the somatic mutational status of the FGFR3 gene in urothelial bladder cancer (BC) and evaluate its relationship with the clinical and morphological characteristics of the tumor, deficiency of the DNA mismatch repair (dMMR), PD-L1 tumor status, and immunohistochemical (IHC) expression of the p16 protein. MATERIAL AND METHODS: Surgical material of 40 patients with BC, on which the mutational status of the FGFR3 gene was studied using the molecular genetic method, as well as the MMR status, PD-L1 and p16 expression by the IHC method. RESULTS: FGFR3 mutations, such as G370C, S249C, S371C/Y373C, R248C, were detected in 35.0% of the studied BC samples. FGFR3 status did not depend on the gender and age of patients, as well as on the degree of tumor lymphoid infiltration (TILs). Statistically significant differences were found in the analysis of FGFR3 status depending on the histological structure and degree of tumor differentiation, as well as on the pT stage. The FGFR3 status of BC was not associated with the IHC expression of the studied proteins of the MMR system, as well as with the PD-L1 status. Higher levels of PD-L1 expression were demonstrated by BC tumor cells, in which no aberrations in FGFR3 were detected. There was no significant association between p16 status and the presence of FGFR3 mutations, but for FGFR3-positive carcinomas, the basal pattern of p16 staining by IHC was noted. CONCLUSION: A positive somatic mutational status of the FGFR3 gene was statistically significantly more common in the group of papillary low-grade non-muscle-invasive BC, demonstrating basal p16 IHC staining. In the study sample, there was no statistically significant relationship between the FGFR3 status of BC and gender and age differences, TILs, MMR status, PD-L1 status (SP142 and 22C3), and p16 status. The results of the study indicate the need to determine the FGFR3 status in patients with BC for further prescription of personalized therapy.


Subject(s)
Carcinoma, Transitional Cell , Urinary Bladder Neoplasms , Humans , B7-H1 Antigen , Urinary Bladder/metabolism , Urinary Bladder/pathology , Urinary Bladder Neoplasms/genetics , Mutation , Receptor, Fibroblast Growth Factor, Type 3/genetics , Receptor, Fibroblast Growth Factor, Type 3/metabolism
10.
Arkh Patol ; 85(2): 48-52, 2023.
Article in Russian | MEDLINE | ID: mdl-37053354

ABSTRACT

In 2022, the Quality Control Center for Immunohistochemical Studies of the Russian Medical Academy of Continuing Professional Education conducted 12 rounds of markers for breast, lung, prostate, bladder cancer with the participation of 83 laboratories. For the first time, a round was held to control the method of in situ hybridization in the diagnosis of breast cancer, and a digital round. Typical problems in carrying out immunohistochemical studies in oncomorphology have been identified and the importance of participation of laboratories in external control has been shown.


Subject(s)
Breast Neoplasms , Humans , Female , Breast Neoplasms/diagnosis , Breast Neoplasms/genetics , In Situ Hybridization , Immunohistochemistry , Quality Control , Laboratories
11.
J Pain ; 24(7): 1298-1306, 2023 Jul.
Article in English | MEDLINE | ID: mdl-36878384

ABSTRACT

Spinal cord stimulation (SCS) is a recommended therapy to treat failed back surgery syndrome (FBSS). A trial period is practiced to enhance patient selection. However, its fundamental evidence is limited, especially concerning long-term benefit and therapy safety. We compared the long-term (5.3 ± 4.0 years) clinical outcome and therapy safety of a trialed and nontrialed implantation strategy, including multidimensional variables and pain intensity fluctuations over time. A multicenter cohort analysis was performed in 2 comparable groups of FBSS patients. Regarding eligibility, patients had to be treated with SCS for at least 3 months. While the Trial group comprised patients who underwent an SCS implantation after a successful trial, the No-Trial group encompassed patients who underwent complete implantation within 1 session. The primary outcome measures were pain intensity scores and complications. The Trial and No-Trial groups consisted of 194 and 376 patients (N = 570), respectively. A statistically but not clinically significant difference in pain intensity (P = .003; effect = 0.506 (.172-.839)) was found in favor of the Trial group. No interaction between a time dependency effect and pain intensity was noted. Whereas trialed SCS patients were more likely to cease opioid usage (P = .003; OR = .509 (.326-.792)), patients in the No-Trial group endured fewer infections (P = .006; proportion difference = .43 (.007-.083)). Although the clinical relevance of our findings should be proven in future studies, this long-term real-world data study indicates that patient-centered assessments on whether an SCS trial should be performed have to be investigated. According to the current ambiguous evidence, SCS trials should be considered on a case-by-case basis. PERSPECTIVE: The currently available comparative evidence, together with our results, remains ambiguous on which SCS implantation strategy might be deemed superior. An SCS trial should be considered on a case-by-case basis, for which further investigation of its clinical utility in certain patient populations or character traits is warranted.


Subject(s)
Failed Back Surgery Syndrome , Spinal Cord Stimulation , Humans , Failed Back Surgery Syndrome/therapy , Failed Back Surgery Syndrome/complications , Spinal Cord Stimulation/methods , Longitudinal Studies , Cohort Studies , Time Factors , Treatment Outcome , Spinal Cord
13.
Sci Total Environ ; 871: 161860, 2023 May 01.
Article in English | MEDLINE | ID: mdl-36758699

ABSTRACT

Biochar application to soil has the potential to affect soil and vegetation properties that are key for the processes of runoff and soil erosion. However, both field and pot experiments show a vast range of effects, from strong reductions to strong increases in runoff and/or soil erosion. Therefore, this study aimed to quantify and interpret the impacts of biochar on runoff and soil erosion through the first systematic meta-analysis on this topic. The developed dataset consists of 184 pairwise observations for runoff and soil erosion from 30 independent studies but 8 of which just focused on soil erosion. Overall, biochar application to soil significantly reduced runoff by 25 % and erosion by 16 %. Mitigation of soil erosion in the tropics was approximately three times stronger (30 %) than at temperate latitudes (9 %); erosion reduction in the subtropical zone was 14 %, but not significantly different from either the tropical or temperate zones. Fewer reported field observations for runoff resulted in larger confidence intervals and only the temperate latitudes showed a significant effect (i.e. a 28 % reduction). At topsoil gravimetric biochar concentrations between 0.6 % and 2.5 %, significant reductions occurred in soil erosion, with no effect at lower and higher concentrations. Biochar experiments that included a vegetation cover reduced soil erosion more than twice as much as bare soil experiments, i.e. 27 % vs 12 %, respectively. This suggests that soil infiltration, canopy interception, and soil cohesion mechanisms may have synergistic effects. Soil amended with biochar pyrolyzed at >500 °C was associated with roughly double the erosion reduction than soil amended with biochar produced at 300-500 °C, which potentially could be related to the enhancement of hydrophobicity in the latter case. Our results demonstrate substantial potential for biochar to improve ecosystem services that are affected by increased infiltration and reduced erosion, while mechanistic understanding needs to be improved.


Subject(s)
Ecosystem , Soil Erosion , Water , Soil
14.
Support Care Cancer ; 31(2): 138, 2023 Jan 26.
Article in English | MEDLINE | ID: mdl-36701038

ABSTRACT

PURPOSE: Peripheral neuropathy (PN) is common in multiple myeloma (MM) patients. More insight has been gained concerning the role of vitamin D in preventing PN. However, studies evaluating the effects of vitamin D3 supplementation on PN are lacking. The aims of this study are to (1) evaluate the effectiveness of a vitamin D3 regimen on achieving adequate vitamin D levels in deficient MM patients and to (2) exploratively evaluate the effect of vitamin D3 supplementation on PN. METHODS: Thirty-nine MM patients with inadequate (< 75 nmol/L [= 30 ng/mL]) 25-hydroxyvitamin D (25(OH)D) levels were included in this multicenter, prospective, single-arm study, of whom 35 patients completed the study. They received oral vitamin D3 for 6 months according to a dose escalation regimen that consisted of one or two loading doses of 200,000 international units (IU), and maintenance doses of 800, 1600, or 3200 IU/day depending on the 25(OH)D level. A validated questionnaire was used to measure PN. RESULTS: Median 25(OH)D increased from 38 (IQR 32-52) nmol/L at baseline to 77 (IQR 72-87) nmol/L after 6 months (P < 0.001). Adequate 25(OH)D levels were achieved by 66% of the subjects, and 34% were within the range of 50-75 nmol/L. Furthermore, in 37% of the participants, PN severity decreased (P = 0.007). CONCLUSION: The use of substantially higher vitamin D3 doses than recommended in current guidelines resulted in a significant increase in vitamin D levels in MM patients. Furthermore, evaluation of PN showed a significant decrease in PN grading. However, this exploratory evaluation needs further confirmatory research.


Subject(s)
Multiple Myeloma , Peripheral Nervous System Diseases , Vitamin D Deficiency , Humans , Prospective Studies , Multiple Myeloma/complications , Multiple Myeloma/drug therapy , Dietary Supplements , Vitamin D Deficiency/drug therapy , Vitamin D/therapeutic use , Vitamins , Cholecalciferol/therapeutic use , Cholecalciferol/pharmacology , Peripheral Nervous System Diseases/drug therapy , Peripheral Nervous System Diseases/etiology
15.
Arkh Patol ; 84(6): 81-82, 2022.
Article in Russian | MEDLINE | ID: mdl-36469723

ABSTRACT

Among the prominent medical scientists of our country, George Vladimirovich Shor, an outstanding Russian pathologist, Doctor of Medicine (1903), Professor (1913), Honored Scientist of the RSFSR (1933), deserves a worthy place.


Subject(s)
Anniversaries and Special Events , Pathologists , Humans , History, 20th Century , Russia
16.
Ther Drug Monit ; 44(6): 755-761, 2022 12 01.
Article in English | MEDLINE | ID: mdl-36006609

ABSTRACT

AIM: This study examined whether anthropometric and body composition parameters such as body surface area (BSA), lean body mass (LBM), and total body weight (TBW) are correlated with docetaxel clearance and exposure by analyzing area under the curve. In addition, LBM, TBW, and a fixed dose were compared with BSA as dosing parameters for dose individualization of docetaxel. METHODS: Thirty-six patients receiving docetaxel chemotherapy for breast or metastatic castration-resistant prostate carcinoma were included. Before treatment, LBM was measured using a dual-energy X-ray absorptiometry scanner. Blood samples were collected up to 180 minutes after dosing to analyze docetaxel concentrations and determine individual pharmacokinetic parameters. RESULTS: No significant correlations were found between docetaxel clearance and the anthropometric and body composition variables (BSA, LBM, and TBW). The area under the curve was significantly but poorly correlated with BSA [r = 0.452 ( P = 0.016)] and TBW [r = 0.476 ( P = 0.011)]. The mean absolute percentage error and mean error of simulated dosing based on LBM and fixed dosing were not significantly different from those of BSA. For TBW, only mean absolute percentage error was significantly higher compared with dosing based on BSA (24.1 versus 17.1, P = 0.001). CONCLUSIONS: There was no clinically relevant correlation between docetaxel pharmacokinetics and the anthropometric and body composition variables BSA, LBM, and TBW. Therefore, dose individualization of docetaxel based on LBM, TBW, or fixed dosing cannot be recommended over BSA-based dosing.


Subject(s)
Body Composition , Male , Humans , Body Surface Area , Docetaxel , Body Weight , Anthropometry
18.
Value Health ; 25(12): 1958-1966, 2022 12.
Article in English | MEDLINE | ID: mdl-35752535

ABSTRACT

OBJECTIVES: National health technology assessments (HTAs) across Europe show differences in evidentiary requirements from assessments by the European Medicines Agency (EMA), affecting time to patient access for drugs after marketing authorization. This article analyzes the differences between EMA and HTA bodies' evidentiary requirements for oncology drugs and provides recommendations on potential further alignment to minimize and optimally manage the remaining differences. METHODS: Interviews were performed with representatives and drug assessment experts from EMA and HTA bodies to identify evidentiary requirements for several subdomains and collect recommendations for potentially more efficiently addressing differences. A comparative analysis of acceptability of the evidence by EMA and the HTA bodies and for potential further alignment between both authorities was conducted. RESULTS: Acceptability of available evidence was higher for EMA than HTA bodies. HTA bodies and EMA were aligned on evidentiary requirements in most cases. The subdomains showing notable differences concerned the acceptance of limitation of the target population and extrapolation of target populations, progression-free survival and (other) surrogate endpoints as outcomes, cross-over designs, short trial duration, and clinical relevance of the effect size. Recommendations for reducing or optimally managing differences included joint early dialogues, joint relative effectiveness assessments, and the use of managed entry agreements. CONCLUSIONS: Differences between assessments of EMA and HTA bodies were identified in important areas of evidentiary requirements. Increased alignment between EMA and HTA bodies is suggested and recommendations for realization are discussed.


Subject(s)
Technology Assessment, Biomedical , Humans , Europe
19.
J Struct Biol X ; 6: 100068, 2022.
Article in English | MEDLINE | ID: mdl-35601683

ABSTRACT

AreTomo, an abbreviation for Alignment and Reconstruction for Electron Tomography, is a GPU accelerated software package that fully automates motion-corrected marker-free tomographic alignment and reconstruction in a single package. By correcting in-plane rotation, translation, and importantly, the local motion resulting from beam-induced motion from tilt to tilt, AreTomo can produce tomograms with sufficient accuracy to be directly used for subtomogram averaging. Another major application is the on-the-fly reconstruction of tomograms in parallel with tilt series collection to provide users with real-time feedback of sample quality allowing users to make any necessary adjustments of collection parameters. Here, the multiple alignment algorithms implemented in AreTomo are described and the local motions measured on a typical tilt series are analyzed. The residual local motion after correction for global motion was found in the range of ± 80 Å, indicating that the accurate correction of local motion is critical for high-resolution cryo-electron tomography (cryoET).

20.
Arkh Patol ; 84(2): 72-76, 2022.
Article in Russian | MEDLINE | ID: mdl-35417952

ABSTRACT

In 2019-2021 the Russian Medical Academy of Continuous Professional Education Center for quality control of immunohistochemical studies conducted rounds on the most used tumour markers of various localizations. The deficiencies in the conduct of immunohistochemical studies were identified and the importance of the participation of medical organizations in measures to improve the quality control of immunohistochemical studies in oncomorphology was shown.


Subject(s)
Education, Professional , Humans , Quality Control , Russia
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