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1.
J Neurosci Methods ; 242: 127-40, 2015 Mar 15.
Article in English | MEDLINE | ID: mdl-25549550

ABSTRACT

BACKGROUND: Spike-wave discharges (SWD) found in neuroelectrical recordings are pathognomonic to absence epilepsy. The characteristic spike-wave morphology of the spike-wave complex (SWC) constituents of SWDs can be mathematically described by a subset of possible spectral power and phase values. Morlet wavelet transform (MWT) generates time-frequency representations well-suited to identifying this SWC-associated subset. NEW METHOD: MWT decompositions of SWDs reveal spectral power concentrated at harmonic frequencies. The phase relationships underlying SWC morphology were identified by calculating the differences between phase values at SWD fundamental frequency from the 2nd, 3rd, and 4th harmonics, then using the three phase differences as coordinates to generate a density distribution in a {360°×360°×360°} phase difference space. Strain-specific density distributions were generated from SWDs of mice carrying the Gria4, Gabrg2, or Scn8a mutations to determine whether SWC morphological variants reliably mapped to the same regions of the distribution, and if distribution values could be used to detect SWD. COMPARISON WITH EXISTING METHODS: To the best of our knowledge, this algorithm is the first to employ spectral phase to quantify SWC morphology, making it possible to computationally distinguish SWC morphological subtypes and detect SWDs. RESULTS/CONCLUSIONS: Proof-of-concept testing of the SWDfinder algorithm shows: (1) a major pattern of variation in SWC morphology maps to one axis of the phase difference distribution, (2) variability between the strain-specific distributions reflects differences in the proportions of SWC subtypes generated during SWD, and (3) regularities in the spectral power and phase profiles of SWCs can be used to detect waveforms possessing SWC-like morphology.


Subject(s)
Algorithms , Electroencephalography/methods , Epilepsy, Absence/diagnosis , Epilepsy, Absence/physiopathology , Wavelet Analysis , Animals , Brain/physiopathology , Disease Models, Animal , Epilepsy, Absence/genetics , Mice, Inbred C3H , Mice, Transgenic , Mutation , Seizures/diagnosis , Seizures/genetics , Seizures/physiopathology
2.
Genes Brain Behav ; 13(8): 831-40, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25251056

ABSTRACT

Absence epilepsy (AE) is a complex, heritable disease characterized by a brief disruption of normal behavior and accompanying spike-wave discharges (SWD) on the electroencephalogram. Only a handful of genes has been definitively associated with AE in humans and rodent models. Most studies suggest that genetic interactions play a large role in the etiology and severity of AE, but mapping and understanding their architecture remains a challenge, requiring new computational approaches. Here we use combined analysis of pleiotropy and epistasis (CAPE) to detect and interpret genetic interactions in a meta-population derived from three C3H × B6J strain crosses, each of which is fixed for a different SWD-causing mutation. Although each mutation causes SWD through a different molecular mechanism, the phenotypes caused by each mutation are exacerbated on the C3H genetic background compared with B6J, suggesting common modifiers. By combining information across two phenotypic measures - SWD duration and frequency - CAPE showed a large, directed genetic network consisting of suppressive and enhancing interactions between loci on 10 chromosomes. These results illustrate the power of CAPE in identifying novel modifier loci and interactions in a complex neurological disease, toward a more comprehensive view of its underlying genetic architecture.


Subject(s)
Epilepsy, Absence/genetics , Epistasis, Genetic , Gene Regulatory Networks , Models, Genetic , Animals , Disease Models, Animal , Humans , Mice , Phenotype , Quantitative Trait Loci
3.
Genes Brain Behav ; 13(6): 519-26, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24861780

ABSTRACT

Twenty-seven inbred strains of mice were tested for spike-wave discharge (SWD) activity by video-electroencephalographic recordings over a 24-h recording period. Eight strains had reproducible, frequent SWDs, including five strains (C57BLKS/J, CBA/J, DBA/1J, NOR/LtJ, SM/J) previously undiagnosed for this distinctive phenotype. Eighteen other strains exhibited no such activity. Spike-wave discharges usually occurred while the subject was motionless, and in a significant number of annotated instances coincided with an arrest of the subject's relatively unrestrained locomotor activity, which resumed immediately after the discharge ended. In all five new strains, SWDs were suppressed by ethosuximide administration. From the genealogy of inbred strains, we suggest that two ancestors, A and DBA, transmitted genotypes required for SWD in all positive strains. Together these strains with SWDs provide new opportunities to understand the genetic core susceptibility of this distinctive electroencephalographic activity and to explore its relationship to absence epilepsy, a human disorder for which few genes are known.


Subject(s)
Brain Waves/genetics , Animals , Epilepsy, Absence/genetics , Male , Mice , Mice, Inbred C57BL , Mice, Inbred CBA , Mice, Inbred DBA
4.
Neurobiol Dis ; 67: 180-90, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24657915

ABSTRACT

In excitatory neurons, SCN2A (NaV1.2) and SCN8A (NaV1.6) sodium channels are enriched at the axon initial segment. NaV1.6 is implicated in several mouse models of absence epilepsy, including a missense mutation identified in a chemical mutagenesis screen (Scn8a(V929F)). Here, we confirmed the prior suggestion that Scn8a(V929F) exhibits a striking genetic background-dependent difference in phenotypic severity, observing that spike-wave discharge (SWD) incidence and severity are significantly diminished when Scn8a(V929F) is fully placed onto the C57BL/6J strain compared with C3H. Examination of sequence differences in NaV subunits between these two inbred strains suggested NaV1.2(V752F) as a potential source of this modifier effect. Recognising that the spatial co-localisation of the NaV channels at the axon initial segment (AIS) provides a plausible mechanism for functional interaction, we tested this idea by undertaking biophysical characterisation of the variant NaV channels and by computer modelling. NaV1.2(V752F) functional analysis revealed an overall gain-of-function and for NaV1.6(V929F) revealed an overall loss-of-function. A biophysically realistic computer model was used to test the idea that interaction between these variant channels at the AIS contributes to the strain background effect. Surprisingly this modelling showed that neuronal excitability is dominated by the properties of NaV1.2(V752F) due to "functional silencing" of NaV1.6(V929F) suggesting that these variants do not directly interact. Consequent genetic mapping of the major strain modifier to Chr 7, and not Chr 2 where Scn2a maps, supported this biophysical prediction. While a NaV1.6(V929F) loss of function clearly underlies absence seizures in this mouse model, the strain background effect is apparently not due to an otherwise tempting Scn2a variant, highlighting the value of combining physiology and genetics to inform and direct each other when interrogating genetic complex traits such as absence epilepsy.


Subject(s)
Brain/physiopathology , Epilepsy, Absence/genetics , Epilepsy, Absence/physiopathology , NAV1.2 Voltage-Gated Sodium Channel/genetics , NAV1.2 Voltage-Gated Sodium Channel/metabolism , NAV1.6 Voltage-Gated Sodium Channel/genetics , NAV1.6 Voltage-Gated Sodium Channel/metabolism , Animals , Axons/physiology , Disease Models, Animal , Mice , Mice, Inbred C3H , Mice, Inbred C57BL , Mice, Mutant Strains , Models, Neurological
5.
Genes Brain Behav ; 10(7): 765-77, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21745337

ABSTRACT

Mice deficient for the gene encoding the RNA-binding protein CELF4 (CUGBP, ELAV-like family member 4) have a complex seizure phenotype that includes both convulsive and non-convulsive seizures, depending upon gene dosage and strain background, modeling genetically complex epilepsy. Invertebrate CELF is associated with translational control in fruit fly ovary epithelium and with neurogenesis and neuronal function in the nematode. Mammalian CELF4 is expressed widely during early development, but is restricted to the central nervous system in adults. To better understand the etiology of the seizure disorder of Celf4 deficient mice, we studied seizure incidence with spatial and temporal conditional knockout Celf4 alleles. For convulsive seizure phenotypes, it is sufficient to delete Celf4 in adulthood at the age of 7 weeks. This timing is in contrast to absence-like non-convulsive seizures, which require deletion before the end of the first postnatal week. Interestingly, selective deletion of Celf4 from cerebral cortex and hippocampus excitatory neurons, but not from inhibitory neurons, is sufficient to lower seizure threshold and to promote spontaneous convulsions. Correspondingly, Celf4 deficient mice have altered excitatory, but not inhibitory, neurotransmission as measured by patch-clamp recordings of cortical layer V pyramidal neurons. Finally, immunostaining in conjunction with an inhibitory neuron-specific reporter shows that CELF4 is expressed predominantly in excitatory neurons. Our results suggest that CELF4 plays a specific role in regulating excitatory neurotransmission. We posit that altered excitatory neurotransmission resulting from Celf4 deficiency underlies the complex seizure disorder in Celf4 mutant mice.


Subject(s)
Epilepsy/genetics , Excitatory Postsynaptic Potentials/genetics , Gene Deletion , RNA-Binding Proteins/genetics , Seizures/genetics , Age Factors , Animals , CELF Proteins , Critical Period, Psychological , Disease Models, Animal , Electric Stimulation , Epilepsy/classification , Gene Dosage/genetics , Mice , Mice, Knockout , Seizures/classification
6.
Genes Brain Behav ; 8(5): 568-76, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19624305

ABSTRACT

In a chemical mutagenesis screen we identified Szt2 (seizure threshold 2) as a gene that confers low seizure threshold to mice and may also enhance epileptogenesis. The semidominant phenotype was mapped to Chromosome 4 and narrowed further to a critical interval of approximately 650 kb. A novel large (> 10 kb) transcript in the critical interval was found to have fourfold increased steady-state expression at the RNA level in Szt2 homozygous mutant brain. The corresponding 72 exon gene encodes a 378-kD protein with no significant or suggestive sequence similarities to any other protein. The mutant allele of Szt2 contains a splice donor mutation after exon 32, predicting transcriptional read-through, translational frameshift and premature stop. A second Szt2 allele, containing a gene-trap mutation in exon 21, also conferred a low seizure threshold and increased RNA expression, but unlike the original allele, some gene-trap homozygotes died embryonically. Szt2 is transcribed in many tissues, with the highest expression in brain, and it is also expressed during embryonic development. Szt2 is highly conserved in evolution, with a clear, single orthologue found in all land vertebrates and in many invertebrates. Interestingly, in mammals the Szt2 gene resides in a highly conserved head-to-head configuration with Med8 (which encodes a Mediator complex subunit), separated by only 91 nt. While the biological function of Szt2 remains unknown, its high conservation, unique structure and effect on seizure threshold suggest that it serves an important role in the central nervous system.


Subject(s)
Brain/metabolism , Epilepsy/genetics , Genetic Predisposition to Disease/genetics , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Amino Acid Sequence , Animals , Base Sequence , Brain/physiopathology , Brain Chemistry/genetics , Cells, Cultured , Chromosome Mapping , Conserved Sequence , Disease Models, Animal , Epilepsy/metabolism , Epilepsy/physiopathology , Evolution, Molecular , Exons , Frameshift Mutation/genetics , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Nerve Tissue Proteins/isolation & purification , RNA, Messenger/analysis , RNA, Messenger/metabolism , Sequence Homology, Amino Acid
7.
Genes Brain Behav ; 8(3): 283-9, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19170754

ABSTRACT

Absence epilepsy is a common form of idiopathic generalized epilepsy whose etiology is poorly understood because of genetic and phenotypic heterogeneity. The inbred mouse strain C3H/He exhibits spontaneous absence seizures characterized by spike and wave discharges (SWD) on the electroencephalogram concomitant with behavioral arrest. Previous studies using the C3H/HeJ (HeJ) substrain identified a mutation in the Gria4 gene as a major susceptibility locus. In the present study, we found that two closely related substrains C3H/HeOuJ (OuJ) and C3H/HeSnJ, which have a similar SWD incidence as HeJ, do not contain the Gria4 mutation. Further analysis of backcross mice segregating OuJ and C57BL/6J alleles shows that, unlike the HeJ substrain, OuJ does not have a major locus for SWD but has suggestive loci at best that would explain only a fraction of the phenotypic variance. These results illustrate how the genetic etiology of a common neurological disorder can differ between substrains with similar phenotypes. We infer that all C3H strains are sensitized to SWD and that additional mutations affecting SWD arose or were fixed independently in the years since the substrains diverged.


Subject(s)
Epilepsy, Absence/genetics , Genetic Predisposition to Disease/genetics , Mutation/genetics , Receptors, AMPA/genetics , Animals , Brain Chemistry/genetics , Disease Models, Animal , Electroencephalography , Epilepsy, Absence/metabolism , Epilepsy, Absence/physiopathology , Evoked Potentials/genetics , Genetic Variation/genetics , Mice , Mice, Inbred C3H , Mice, Inbred C57BL , Phenotype , Species Specificity
8.
Neuroscience ; 155(1): 31-44, 2008 Jul 31.
Article in English | MEDLINE | ID: mdl-18597946

ABSTRACT

The calcium channel CACNA1A gene encodes the pore-forming, voltage-sensitive subunit of the voltage-dependent calcium Ca(v)2.1 type channel. Mutations in this gene have been linked to several human disorders, including familial hemiplegic migraine, episodic ataxia 2 and spinocerebellar ataxia type 6. The mouse homologue, Cacna1a, is associated with the tottering, Cacna1a(tg), mutant series. Here we describe two new missense mutant alleles, Cacna1a(tg-4J) and Cacna1a(Tg-5J). The Cacna1a(tg-4J) mutation is a valine to alanine mutation at amino acid 581, in segment S5 of domain II. The recessive Cacna1a(tg-4J) mutant exhibited the ataxia, paroxysmal dyskinesia and absence seizures reminiscent of the original tottering mouse. The Cacna1a(tg-4J) mutant also showed altered activation and inactivation kinetics of the Ca(v)2.1 channel, not previously reported for other tottering alleles. The semi-dominant Cacna1a(Tg-5J) mutation changed a conserved arginine residue to glutamine at amino acid 1252 within segment S4 of domain III. The heterozygous mouse was ataxic and homozygotes rarely survived. The Cacna1a(Tg-5J) mutation caused a shift in both voltage activation and inactivation to lower voltages, showing that this arginine residue is critical for sensing Ca(v)2.1 voltage changes. These two tottering mouse models illustrate how novel allelic variants can contribute to functional studies of the Ca(v)2.1 calcium channel.


Subject(s)
Calcium Channels, N-Type/genetics , Mutation , Nervous System Diseases , Alanine/genetics , Animals , Animals, Newborn , Calbindins , Cells, Cultured , Cysteine/genetics , Disease Models, Animal , Glycine/genetics , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Ion Channel Gating/genetics , Membrane Potentials/drug effects , Membrane Potentials/genetics , Membrane Potentials/radiation effects , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Mice, Mutant Strains , Models, Molecular , Nervous System Diseases/genetics , Nervous System Diseases/pathology , Nervous System Diseases/physiopathology , Patch-Clamp Techniques , Purkinje Cells/pathology , Purkinje Cells/physiology , Purkinje Cells/ultrastructure , S100 Calcium Binding Protein G/metabolism , Silver Staining/methods , Threonine/genetics , Tyrosine 3-Monooxygenase/metabolism
9.
Int J Gynecol Cancer ; 18(1): 136-40, 2008.
Article in English | MEDLINE | ID: mdl-17466051

ABSTRACT

The objective is to determine the relationship between obesity and defects in DNA mismatch repair (MMR) in women with endometrial cancer and to establish whether our previous finding of a higher rate of previous malignancy in thinner women with endometrial cancer is related to these factors. Specimens from 109 patients with primary uterine cancer were used to create a tissue microarray, which was stained with antibodies against MMR genes MLH1, MSH2, MSH6, and PMS2. Genotyping of normal and tumor tissues for microsatellite instability (MSI) was performed. Patients were stratified by body mass index (BMI) and correlated with a history of previous malignancy and defects in MMR. The average BMI of the overall population was 33 kg/m(2). Defective MMR was seen in 22% of tumors. The mean BMI in patients with tumors with MSI was 30.5, compared with 33.8 in microsatellite stable (MSS) tumors (P= 0.06); MSS tumors were more commonly seen in patients with a BMI more than 40 (25% vs 5% in patients with tumors with MSI, P= 0.07). Prior to their diagnosis of endometrial cancer, 16/109 (15%) patients reported having a prior malignancy, 11 (69%) had breast cancer, and 1 had colorectal cancer. Patients with tumors with MSI had previous cancer in 17% of cases, compared with 14% of patients with MSS tumors (P= 0.75). Our previous finding of an increased rate of prior malignancy in thinner patients with endometrial cancer does not appear to be due to alterations in MMR, and hereditary nonpolyposis colorectal cancer-associated cancers are rarely the prior malignancy.


Subject(s)
Body Mass Index , Breast Neoplasms/genetics , DNA Mismatch Repair , Endometrial Neoplasms/genetics , Thinness , Adaptor Proteins, Signal Transducing/genetics , Adenosine Triphosphatases/genetics , Adult , Aged , Aged, 80 and over , Body Weight , DNA Repair Enzymes/genetics , DNA-Binding Proteins/genetics , Female , Genotype , Humans , Immunoenzyme Techniques , Microsatellite Instability , Middle Aged , Mismatch Repair Endonuclease PMS2 , MutL Protein Homolog 1 , MutS Homolog 2 Protein/genetics , Nuclear Proteins/genetics , Tissue Array Analysis
10.
Br J Cancer ; 91(7): 1287-92, 2004 Oct 04.
Article in English | MEDLINE | ID: mdl-15354210

ABSTRACT

Mismatch repair (MMR) deficiency in tumours from patients with the hereditary nonpolyposis colorectal cancer (HNPCC) syndrome is mainly caused by mutations in the MLH1, MSH2, and MSH6 genes. A major challenge in the clinical management of patients with suspected HNPCC is the frequent occurrence of missense mutations in MSH6. These can be considered neither deleterious nor clinically innocent a priori. To assess their significance we studied five novel MSH6 missense mutations in six patients derived from a series of consecutive endometrial and colorectal cancer patients selected for study after their tumours were determined to be microsatellite unstable. We tested each mutated protein for heterodimerisation with MSH2 and for in vitro MMR capability. Four mutations (R128L, P623L, K728T, G881K+S) showed no impairment of these functions while the fifth (E1193K) displayed marked impairment of both functions. These results, taken together with our previous similar findings concerning six other missense mutations in MSH6, allow us to conclude that many or most missense changes in MSH6 likely are clinically innocent, whereas some missense changes such as E1193K, which lead to impaired MMR, are likely to be clinically significant, but have low penetrance.


Subject(s)
Colorectal Neoplasms/genetics , DNA-Binding Proteins/genetics , Endometrial Neoplasms/genetics , Genetic Predisposition to Disease , Mutation, Missense , Base Pair Mismatch , Blotting, Western , Colorectal Neoplasms/pathology , DNA Mutational Analysis , DNA Repair , Endometrial Neoplasms/pathology , Female , Humans , Male
11.
Neuropsychopharmacology ; 29(6): 1190-202, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15010698

ABSTRACT

Striatal dopamine D2 receptors have been implicated in the neurobiology of cocaine addiction. Previous imaging studies showed reduced striatal D2 receptor availability in chronic cocaine abusers, and animal studies suggested that low D2 receptor availability promotes cocaine self-administration. Here, D2 receptor availability was assessed with positron emission tomography (PET) and [11C]raclopride in the limbic, associative, and sensori-motor subdivisions of the striatum in 17 recently detoxified chronic cocaine-dependent (CCD) subjects and 17 matched healthy control (HC) subjects. In addition, the relationship between regional D2 receptor availability and behavioral measures obtained in cocaine self-administration sessions was investigated in CCD subjects. [11C]Raclopride binding potential was significantly reduced by 15.2% in the limbic striatum, 15.0% in the associative striatum, and 17.1% in the sensori-motor striatum in CCD subjects compared to HC subjects. In CCD subjects, no relationship was detected between D2 availability in striatal regions and either the positive effects of smoked cocaine or the choice of cocaine over an alternative reinforcer (money) following a priming dose of cocaine (a laboratory model of relapse). Thus, this study confirms previous reports of a modest decrease in D2 receptor availability in CCD subjects, and establishes that this decrease is generalized throughout the striatum. However, this study failed to demonstrate a relationship between D2 receptor availability and cocaine-induced cocaine-taking behavior. Additional research is warranted to unravel potential neurobiological traits that might confer vulnerability to relapse in detoxified CCD subjects.


Subject(s)
Cocaine-Related Disorders/metabolism , Cocaine/administration & dosage , Corpus Striatum/metabolism , Dopamine Uptake Inhibitors/administration & dosage , Receptors, Dopamine D2/metabolism , Adult , Binding Sites/drug effects , Brain Mapping , Case-Control Studies , Choice Behavior/drug effects , Corpus Striatum/diagnostic imaging , Corpus Striatum/drug effects , Dopamine Antagonists/pharmacokinetics , Dose-Response Relationship, Drug , Female , Humans , Male , Raclopride/pharmacokinetics , Self Administration , Time Factors , Tomography, Emission-Computed/methods
12.
Proc Natl Acad Sci U S A ; 98(26): 15044-9, 2001 Dec 18.
Article in English | MEDLINE | ID: mdl-11752453

ABSTRACT

Papillary thyroid carcinoma (PTC) is clinically heterogeneous. Apart from an association with ionizing radiation, the etiology and molecular biology of PTC is poorly understood. We used oligo-based DNA arrays to study the expression profiles of eight matched pairs of normal thyroid and PTC tissues. Additional PTC tumors and other tissues were studied by reverse transcriptase-PCR and immunohistochemistry. The PTCs showed concordant expression of many genes and distinct clustered profiles. Genes with increased expression in PTC included many encoding adhesion and extracellular matrix proteins. Expression was increased in 8/8 tumors for 24 genes and in 7/8 tumors for 22 genes. Among these genes were several previously known to be overexpressed in PTC, such as MET, LGALS3, KRT19, DPP4, MDK, TIMP1, and FN1. The numerous additional genes include CITED1, CHI3L1, ODZ1, N33, SFTPB, and SCEL. Reverse transcriptase-PCR showed high expression of CITED1, CHI3L1, ODZ1, and SCEL in 6/6 additional PTCs. Immunohistochemical analysis detected CITED1 and SFTPB in 49/52 and 39/52 PTCs, respectively, but not in follicular thyroid carcinoma and normal thyroid tissue. Genes underexpressed in PTC included tumor suppressors, thyroid function-related proteins, and fatty acid binding proteins. Expression was decreased in 7/8 tumors for eight genes and decreased in 6/8 tumors for 19 genes. We conclude that, despite its clinical heterogeneity, PTC is characterized by consistent and specific molecular changes. These findings reveal clues to the molecular pathways involved in PTC and may provide biomarkers for clinical use.


Subject(s)
Gene Expression Profiling , Thyroid Neoplasms/genetics , Biomarkers, Tumor , Cell Adhesion Molecules/genetics , Cluster Analysis , Humans , Oligonucleotide Array Sequence Analysis , Reverse Transcriptase Polymerase Chain Reaction
13.
Neuron ; 32(2): 203-12, 2001 Oct 25.
Article in English | MEDLINE | ID: mdl-11683991

ABSTRACT

Weeble mutant mice have severe locomotor instability and significant neuronal loss in the cerebellum and in the hippocampal CA1 field. Genetic mapping was used to localize the mutation to the gene encoding inositol polyphosphate 4-phosphatase type I (Inpp4a), where a single nucleotide deletion results in a likely null allele. The substrates of INPP4A are intermediates in a pathway affecting intracellular Ca(2+) release but are also involved in cell cycle regulation through binding the Akt protooncogene; dysfunction in either may account for the neuronal loss of weeble mice. Although other mutations in phosphoinositide enzymes are associated with synaptic defects without neuronal loss, weeble shows that Inpp4a is critical for the survival of a subset of neurons during postnatal development in mice.


Subject(s)
Mutation , Neurons/pathology , Phosphoric Monoester Hydrolases/genetics , Alleles , Animals , Apoptosis , Ataxia/genetics , Calbindins , Calcium/metabolism , Cell Cycle/genetics , Cell Death/genetics , Cerebellum/chemistry , Cerebellum/pathology , Gene Deletion , Gene Expression , Hippocampus/pathology , In Situ Hybridization , In Situ Nick-End Labeling , Mice , Mice, Inbred C57BL , Mice, Neurologic Mutants , Molecular Sequence Data , Motor Activity , S100 Calcium Binding Protein G/analysis
14.
Cell ; 107(1): 13-6, 2001 Oct 05.
Article in English | MEDLINE | ID: mdl-11595181

ABSTRACT

Availability of the mouse genome sequence will have a major impact on the study of vertebrate evolution, mammalian biology, and animal models of human disease. Resources to explore genome biology in mice will maximize the effect of this watershed event.


Subject(s)
Evolution, Molecular , Genome , Mice/genetics , Animals , Computational Biology , Disease Models, Animal , Genomics , Humans , Mice, Inbred Strains/genetics , Mice, Transgenic , Sequence Analysis, DNA
15.
Am J Clin Pathol ; 116(3): 336-40, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11554160

ABSTRACT

Adenomatous polyps are common neoplastic lesions of the large intestine. The risk of carcinoma increases with polyp size. Small polyps are typically totally embedded for histologic examination, but no standard method for sampling large, grossly benign polyps has been established. We reviewed grossly noninvasive adenomas 2.5 cm or larger to determine the percentage that contained high-grade dysplasia (HGD) and invasive cancer (IC). Based on these findings, we suggest an approach to evaluating large adenomas. Forty-three colon resections met the inclusion criteria (no previous diagnosis of cancer, no gross evidence of invasion, and totally embedded polyp). Twelve (28%) had HGD with 3% (1 of 33 slides) to 100% (4 of 4 slides) containing HGD. Five (12%) had IC with 4% (3 of 72 slides) to 42% (5 of 12 slides) containing IC. All cases with IC had HGD in other slides. Probability studies showed that in the majority of cases, polyps would need to be entirely embedded to have an estimated probability of 95% or more of detecting either HGD or IC. Therefore, grossly noninvasive adenomas should be routinely entirely embedded.


Subject(s)
Adenoma/pathology , Colorectal Neoplasms/pathology , Adenoma/surgery , Colorectal Neoplasms/surgery , Humans , Neoplasm Invasiveness/pathology , Precancerous Conditions/pathology , Sample Size
16.
J Neurosci ; 21(16): 6095-104, 2001 Aug 15.
Article in English | MEDLINE | ID: mdl-11487633

ABSTRACT

The mouse mutant ducky, a model for absence epilepsy, is characterized by spike-wave seizures and ataxia. The ducky gene was mapped previously to distal mouse chromosome 9. High-resolution genetic and physical mapping has resulted in the identification of the Cacna2d2 gene encoding the alpha2delta2 voltage-dependent calcium channel subunit. Mutations in Cacna2d2 were found to underlie the ducky phenotype in the original ducky (du) strain and in a newly identified strain (du(2J)). Both mutations are predicted to result in loss of the full-length alpha2delta2 protein. Functional analysis shows that the alpha2delta2 subunit increases the maximum conductance of the alpha1A/beta4 channel combination when coexpressed in vitro in Xenopus oocytes. The Ca(2+) channel current in acutely dissociated du/du cerebellar Purkinje cells was reduced, with no change in single-channel conductance. In contrast, no effect on Ca(2+) channel current was seen in cerebellar granule cells, results consistent with the high level of expression of the Cacna2d2 gene in Purkinje, but not granule, neurons. Our observations document the first mammalian alpha2delta mutation and complete the association of each of the major classes of voltage-dependent Ca(2+) channel subunits with a phenotype of ataxia and epilepsy in the mouse.


Subject(s)
Ataxia/genetics , Calcium Channels/genetics , Calcium Channels/metabolism , Epilepsy/genetics , Purkinje Cells/metabolism , Animals , Ataxia/complications , Brain/metabolism , Brain/pathology , Cells, Cultured , Cerebellum/cytology , Cerebellum/metabolism , Chromosome Mapping , Electroencephalography , Epilepsy/complications , Homozygote , In Situ Hybridization , Mice , Mice, Neurologic Mutants , Molecular Sequence Data , Mutation , Oocytes/metabolism , Patch-Clamp Techniques , Phenotype , Protein Subunits , Purkinje Cells/pathology , RNA, Messenger/analysis , RNA, Messenger/biosynthesis , Reverse Transcriptase Polymerase Chain Reaction , Xenopus
17.
Arch Pathol Lab Med ; 125(8): 1051-4, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11473456

ABSTRACT

OBJECTIVE: Indications for major pancreatic resections have been expanded to include complicated chronic pancreatitis (CP). We assessed clinical findings and outcomes and evaluated histology in patients who had major pancreatic resections for CP. We also determined if histologic findings were associated with persistent postoperative pain. DESIGN: We reviewed charts and slides from 44 patients who underwent major pancreatic resections for CP between 1989 and 1999. RESULTS: The etiology for disease included alcohol (n = 15), hereditary (n = 5), idiopathic (n = 6), pancreas divisum (n = 3), stricture (n = 2), trauma (n = 2), systemic lupus erythematosus (n = 1), and unknown (n = 10). Patients included 20 men and 24 women; ages ranged from 22 to 76 years. Perioperative mortality and morbidity were 0% and 4.5%, respectively. Persistent pain was present in 25 (57%) of the 44 patients, and pain was encountered more frequently in patients with alcoholic pancreatitis (67%) versus other etiologies (52%), and in those who underwent Whipple/Beger or total resections (68%) versus distal or subtotal pancreatectomy (42%). Metaplastic changes were present in 14 cases, and ductal atypia was seen in 9 cases. No malignancies were found. Acinar necrosis and acute inflammation were seen more often in patients with persistent pain than in those who were pain free (P =.081). CONCLUSION: Major pancreatic resection for CP can be performed with low morbidity and mortality. This procedure relieves pain in nearly half the patients. There is a wide spectrum of histopathologic changes seen in CP, including ductal atypia and metaplastic changes. Acute exacerbations of CP identified histologically at the time of surgery and alcohol as etiology for CP may be associated more frequently with intractable pain.


Subject(s)
Pain , Pancreatectomy , Pancreatitis/pathology , Pancreatitis/surgery , Postoperative Complications , Adult , Aged , Chronic Disease , Female , Humans , Hyperplasia , Islets of Langerhans/pathology , Male , Middle Aged , Necrosis , Pancreas/pathology , Pancreatic Ducts/pathology , Pancreatitis/etiology , Pancreatitis, Alcoholic/pathology , Pancreatitis, Alcoholic/surgery , Retrospective Studies
18.
J Biol Chem ; 276(35): 32917-24, 2001 Aug 31.
Article in English | MEDLINE | ID: mdl-11441000

ABSTRACT

A novel gene (Cacng2; gamma(2)) encoding a protein similar to the voltage-activated Ca(2+) channel gamma(1) subunit was identified as the defective gene in the epileptic and ataxic mouse, stargazer. In this study, we analyzed the association of this novel neuronal gamma(2) subunit with Ca(2+) channels of rabbit brain, and the function of the gamma(2) subunit in recombinant neuronal Ca(2+) channels expressed in Xenopus oocytes. Our results showed that the gamma(2) subunit and a closely related protein (called gamma(3)) co-sedimented and co-immunoprecipitated with neuronal Ca(2+) channel subunits in vivo. Electrophysiological analyses showed that gamma(2) co-expression caused a significant decrease in the current amplitude of both alpha(1B)(alpha(1)2.2)-class (36.8%) and alpha(1A)(alpha(1)2.1)-class (39.7%) Ca(2+) channels (alpha(1)beta(3)alpha(2)delta). Interestingly, the inhibitory effects of the gamma(2) subunit on current amplitude were dependent on the co-expression of the alpha(2)delta subunit. In addition, co-expression of gamma(2) or gamma(1) also significantly decelerates the activation kinetics of alpha(1B)-class Ca(2+) channels. Taken together, these results suggest that the gamma(2) subunit is an important constituent of the neuronal Ca(2+) channel complex and that it down-regulates neuronal Ca(2+) channel activity. Furthermore, the gamma(2) subunit likely contributes to the fine-tuning of neuronal Ca(2+) channels by counterbalancing the effects of the alpha(2)delta subunit.


Subject(s)
Calcium Channels/chemistry , Calcium Channels/physiology , Microsomes/physiology , Neurons/physiology , Animals , Brain/physiology , Calcium Channels/genetics , Cloning, Molecular , Female , Kinetics , Membrane Potentials/physiology , Mice , Oocytes/physiology , Protein Subunits , Rabbits , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Xenopus laevis
19.
Genomics ; 74(3): 306-12, 2001 Jun 15.
Article in English | MEDLINE | ID: mdl-11414758

ABSTRACT

The electroconvulsive threshold (ECT) test is used commonly in the screening of anti-epileptic drugs in rodent models, but little is known about its genetic or mechanistic basis. Thresholds for minimal clonic, maximal tonic, or psychomotor (partial) seizures were determined in 16 different inbred mouse strains in two different laboratories. A wide range of thresholds was observed, suggesting that a variety of neuroexcitability alleles exist in inbred strains. Although there was generally good cross-strain correlation between the three seizure types, several outlier strains were detected, showing that genetically encoded differences can affect the ability of a particular seizure type to spread through the brain. Furthermore, the relative seizure susceptibility of a strain was comparable between the two laboratories, suggesting that despite different test sites, instrumentation, and personnel, the ECT assay is portable and that common inbred strains can often be relied upon as calibration standards. Last, the ECT paradigm was also sensitive enough to detect single locus differences, laying the groundwork for mutation screens for new neuroexcitability models.


Subject(s)
Potassium Channels, Voltage-Gated , Seizures/physiopathology , Animals , Electroshock , Genotype , Kv1.1 Potassium Channel , Male , Mice , Mice, Inbred AKR , Mice, Inbred BALB C , Mice, Inbred C3H , Mice, Inbred C57BL , Mice, Inbred CBA , Mice, Inbred DBA , Mice, Inbred Strains , Potassium Channels/genetics , Seizures/genetics , Species Specificity
20.
Genomics ; 73(3): 338-42, 2001 May 01.
Article in English | MEDLINE | ID: mdl-11350126

ABSTRACT

Modifier-of-deafwaddler (mdfw) and waltzer (Cdh23v) are loci on mouse chromosome 10 encoding factors that are essential for the function of auditory hair cells. The BALB/cByJ-specific mdfw allele encodes a necessary and sufficient modifier that induces progressive early onset hearing loss in CBy-dfw2J heterozygotes. Recessive mutations in the waltzer locus result in circling behavior and congenital deafness. In this report we present a high-resolution integrated genetic and physical map of mdfw and Cdh23(v). Our genetic analyses localize mdfw between markers D10Mit60 and 148M13T7 within a 1.01-cM region. The Cdh23v critical interval is fully contained within the mdfw region and localizes between markers 146O23T7 and 148M13T7 within a 0.35-cM interval that is represented in an approximately 500-kb BAC contig. Our data suggest that mdfw and Cdh23v are allelic.


Subject(s)
Chromosome Mapping , Deafness/genetics , Mutation/genetics , Physical Chromosome Mapping , Alleles , Animals , Contig Mapping , Female , Genes, Recessive/genetics , Haplotypes , Hearing/genetics , Male , Mice , Mice, Mutant Strains , Phenotype , Polymorphism, Genetic/genetics , Radiation Hybrid Mapping
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