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1.
Biochim Biophys Acta ; 1849(6): 722-30, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25689021

ABSTRACT

The high osmolarity glycerol (HOG) pathway, composed of membrane-associated osmosensors, adaptor proteins and core signaling kinases, is essential for the survival of yeast cells under hyper-osmotic stress. Here, we studied how the MAPKKK Ste11 might change its protein interaction profile during acute stress exposure, with an emphasis on the sensory system of the so-called Sho1/Msb2 signaling branch. To characterize the transience of protein-protein interactions we utilized a recently described enzymatic in vivo protein proximity assay (M-track). Accordingly, interaction signals between Ste11 and many of its signaling partners can already be detected even under basal conditions. In most cases these signals increase after stress induction. All the interactions are completely dependent on the function of the Ste11-adaptor protein Ste50. Moreover, the presence of either Msb2 or Hkr1 is necessary for observing the interaction between Ste11 and scaffolding factors such as Sho1 and Pbs2. Additional assays suggest that Msb2 is not only in close proximity to Ste11 but might function as an individual Ste11 concentrator at the plasma membrane. Our results confirm the existence of negative feedback systems targeting the protein levels of Ste11 and Msb2 and also hint at changes in the dissociation rates of intermediate signaling complexes.


Subject(s)
Intracellular Signaling Peptides and Proteins/metabolism , MAP Kinase Kinase Kinases/metabolism , Osmotic Pressure , Protein Interaction Maps/genetics , Saccharomyces cerevisiae Proteins/metabolism , Feedback, Physiological , Glycerol/metabolism , Intracellular Signaling Peptides and Proteins/genetics , MAP Kinase Kinase Kinases/genetics , Membrane Proteins/metabolism , Osmolar Concentration , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Signal Transduction
2.
Plant Cell Rep ; 33(7): 1187-202, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24748527

ABSTRACT

KEY MESSAGE: We show that DCN1 binds ubiquitin and RUB/NEDD8, associates with cullin, and is functionally conserved. DCN1 activity is required for pollen development transitions and embryogenesis, and for pollen tube growth. Plant proteomes show remarkable plasticity in reaction to environmental challenges and during developmental transitions. Some of this adaptability comes from ubiquitin-mediated protein degradation regulated by cullin-RING E3 ubiquitin ligases (CRLs). CRLs are activated through modification of the cullin subunit with the ubiquitin-like protein RUB/NEDD8 by an E3 ligase called defective in cullin neddylation 1 (DCN1). Here we show that tobacco DCN1 binds ubiquitin and RUB/NEDD8 and associates with cullin. When knocked down by RNAi, tobacco pollen formation was affected and zygotic embryogenesis was blocked around the globular stage. Additionally, we found that RNAi of DCN1 inhibited the stress-triggered reprogramming of cultured microspores from their intrinsic gametophytic mode of development to an embryogenic state. This stress-induced developmental switch is a known feature in many important crops and leads ultimately to the formation of haploid embryos and plants. Compensating the RNAi effect by re-transformation with a promoter-silencing construct restored pollen development and zygotic embryogenesis, as well as the ability for stress-induced formation of embryogenic microspores. Overexpression of DCN1 accelerated pollen tube growth and increased the potential for microspore reprogramming. These results demonstrate that the biochemical function of DCN1 is conserved in plants and that its activity is involved in transitions during pollen development and embryogenesis, and for pollen tube growth.


Subject(s)
Gene Expression Regulation, Plant , Nicotiana/genetics , Plant Proteins/metabolism , Pollen/growth & development , Seeds/genetics , Amino Acid Sequence , Caenorhabditis elegans Proteins/genetics , Cullin Proteins/metabolism , Molecular Sequence Data , NEDD8 Protein , Plant Proteins/genetics , Plants, Genetically Modified , RNA Interference , Sequence Homology, Amino Acid , Nicotiana/growth & development , Ubiquitin/metabolism , Ubiquitins/genetics , Ubiquitins/metabolism
3.
Nat Methods ; 9(6): 594-6, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22581371

ABSTRACT

We developed a protein-proximity assay in yeast based on fusing a histone lysine methyltransferase onto a bait and its substrate onto a prey. Upon binding, the prey is stably methylated and detected by methylation-specific antibodies. We applied this approach to detect varying interaction affinities among proteins in a mitogen-activated protein kinase pathway and to detect short-lived interactions between protein phosphatase 2A and its substrates that have so far escaped direct detection.


Subject(s)
Histone-Lysine N-Methyltransferase/metabolism , Protein Interaction Mapping/methods , Cell Cycle Proteins/metabolism , Humans , Methylation , Mitogen-Activated Protein Kinases/metabolism , Protein Phosphatase 2/metabolism , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Substrate Specificity , TOR Serine-Threonine Kinases/metabolism , Tacrolimus Binding Proteins/metabolism
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