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1.
Mol Phylogenet Evol ; 182: 107754, 2023 05.
Article in English | MEDLINE | ID: mdl-36906193

ABSTRACT

Endeavours in species discovery, particularly the characterisation of cryptic species, have been greatly aided by the application of DNA molecular sequence data to phylogenetic reconstruction and inference of evolutionary and biogeographic processes. However, the extent of cryptic and undescribed diversity remains unclear in tropical freshwaters, where biodiversity is declining at alarming rates. To investigate how data on previously undiscovered biodiversity impacts inferences of biogeography and diversification dynamics, we generated a densely sampled species-level family tree of Afrotropical Mochokidae catfishes (220 valid species) that was ca. 70 % complete. This was achieved through extensive continental sampling specifically targeting the genus Chiloglanis a specialist of the relatively unexplored fast-flowing lotic habitat. Applying multiple species-delimitation methods, we report exceptional levels of species discovery for a vertebrate genus, conservatively delimiting a staggering ca. 50 putative new Chiloglanis species, resulting in a near 80 % increase in species richness for the genus. Biogeographic reconstructions of the family identified the Congo Basin as a critical region in the generation of mochokid diversity, and further revealed complex scenarios for the build-up of continental assemblages of the two most species rich mochokid genera, Synodontis and Chiloglanis. While Syndontis showed most divergence events within freshwater ecoregions consistent with largely in situ diversification, Chiloglanis showed much less aggregation of freshwater ecoregions, suggesting dispersal as a key diversification process in this older group. Despite the significant increase in mochokid diversity identified here, diversification rates were best supported by a constant rate model consistent with patterns in many other tropical continental radiations. While our findings highlight fast-flowing lotic freshwaters as potential hotspots for undescribed and cryptic species diversity, a third of all freshwater fishes are currently threatened with extinction, signifying an urgent need to increase exploration of tropical freshwaters to better characterise and conserve its biodiversity.


Subject(s)
Catfishes , Animals , Phylogeny , Catfishes/genetics , Biological Evolution , Biodiversity , Ecosystem , Phylogeography
2.
Neotrop. ichthyol ; 15(1): e160143, 2017. tab, ilus
Article in English | LILACS, VETINDEX | ID: biblio-841867

ABSTRACT

A new miniature species of banjo catfish of the genus Hoplomyzon is described from the Lake Maracaibo Basin in Venezuela. The new species is distinguished from all its congeners by the straight anterior margin of the mesethmoid (vs. a medial notch); a smooth and straight ventral surface of the premaxilla (vs. presence of bony knobs on the ventral surface of premaxilla); absence of teeth on dentary (vs. teeth present on dentary); configuration of ventral vertebral processes anterior to anal fin, which are composed of single processes anterior to anal-fin pterygiophore (vs. paired process); presence of several filamentous barbel-like structures on the ventral surface of head of adults (vs. small papillous structures in the ventral surface of head of adults); and 8 anal-fin rays (vs. 6 or 7). An extensive osteological description is made of the holotype using high-resolution x-ray computed microtomography (HRXCT).(AU)


Se describe una nueva especie miniatura de pez banjo perteneciente al género Hoplomyzon, proveniente de tributarios del Lago Maracaibo en Venezuela. La nueva especie se diferencia de sus congéneres por presentar el margen anterior del mesetmoide recto (vs. con una hendidura central); superficie ventral de la premaxila lisa y recta (vs. superficie ventral de la premaxila con protuberancias óseas); ausencia de dientes en el dentario (vs. dientes presentes); configuración de los procesos anteriores ventrales de la aleta anal, los que están compuestos de procesos simples anteriores al pterigióforo de la aleta anal (vs. procesos dobles); presencia de varias estructuras en forma de barbillas en la superficie ventral de la cabeza (vs. pequeñas estructuras en forma de papilas en la superficie ventral de la cabeza); y 8 radios en la aleta anal (vs. 6 o 7). Una extensiva descripción osteológica del holotipo fue realizada utilizando microtomografía computarizada de rayos X de alta resolución (HRCXCT).(AU)


Subject(s)
Animals , Catfishes/classification , X-Ray Microtomography/statistics & numerical data , Classification
3.
Zootaxa ; 4088(4): 531-46, 2016 Mar 11.
Article in English | MEDLINE | ID: mdl-27394356

ABSTRACT

A new species of the banjo catfish genus Amaralia is described from the Paraná-Paraguay River Basin in central-western Brazil, Paraguay and northern Argentina. Amaralia oviraptor is distinguished from its single and allopatric congener, Amaralia hypsiura, by the greater number of dorsal-fin rays (3 vs. 2); by the absence of lateral contact between middle and posterior nuchal plates (vs. middle and posterior nuchal plates contacting each other laterally); and by a longer cleithral process (17.4-19.5 % of SL, mean 18.2 % vs. 14.0-17.2 % of SL, mean=15.5 %). Comments on the peculiar oophagic diet of Amaralia and an extended diagnosis of the genus are provided.


Subject(s)
Catfishes/classification , Animal Distribution , Animal Structures/anatomy & histology , Animal Structures/growth & development , Animals , Argentina , Body Size , Brazil , Catfishes/anatomy & histology , Catfishes/growth & development , Female , Male , Organ Size , Paraguay , Rivers
4.
Neotrop. ichthyol ; 13(3): 499-512, July-Sept. 2015. tab, ilus
Article in English | LILACS | ID: lil-760457

ABSTRACT

Two new species of banjo catfish of the genus Bunocephalus are described from the upper and middle rio São Francisco basins of Brazil. Bunocephalus harttiis distinguished from all its congeners by the absence of serrations along the anterior margin of pectoral-fin spine in adults (vs. presence of serrations along the anterior margin of the spine). Bunocephalus minerim can be diagnosed from all congeners,except B. larai, by the absence of an epiphyseal bar between the paired frontals (vs.presence of the epiphyseal bar at least in adults). Bunocephalus minerim is distinguished from B. laraiand other congeners, except B. chamaizelus, by having nine principal caudal-fin rays (vs.10 principal caudal-fin rays).


Duas novas espécies de peixe-banjo do gênero Bunocephalussão descritas para as bacias do alto e médio rio São Francisco no Brasil. Bunocephalus harttidifere das demais espécies do gênero pela ausência de ganchos ao longo da margem anterior do espinho da nadadeira peitoral em adultos (vs. presença de ganchos ao longo da margem anterior do espinho). Bunocephalus minerim pode ser distinguido dos demais congêneres, exceto B. larai, pela ausência da barra epifiseana entre os frontais (vs. presença da barra epifiseana ao menos nos adultos). Bunocephalus minerimpode ser distinguidade B. laraie outras congêneres, exceto B. chamaizelus,pela presença de nove raios principais na nadadeira caudal (vs. 10 raios caudais principais).


Subject(s)
Animals , Catfishes/anatomy & histology , Catfishes/classification , Catfishes/growth & development , Biodiversity , Brazil
5.
Evolution ; 69(6): 1406-1422, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25929355

ABSTRACT

One of the most celebrated examples of sympatric speciation in nature are monophyletic radiations of cichlid fishes endemic to Cameroon crater lakes. However, phylogenetic inference of monophyly may not detect complex colonization histories involving some allopatric isolation, such as double invasions obscured by genome-wide gene flow. Population genomic approaches are better suited to test hypotheses of sympatric speciation in these cases. Here, we use comprehensive sampling from all four sympatric crater lake cichlid radiations in Cameroon and outgroups across Africa combined with next-generation sequencing to genotype tens of thousands of SNPs. We find considerable evidence of gene flow between all four radiations and neighboring riverine populations after initial colonization. In a few cases, some sympatric species are more closely related to outgroups than others, consistent with secondary gene flow facilitating their speciation. Our results do not rule out sympatric speciation in Cameroon cichlids, but rather reveal a complex history of speciation with gene flow, including allopatric and sympatric phases, resulting in both reproductively isolated species and incipient species complexes. The best remaining non-cichlid examples of sympatric speciation all involve assortative mating within microhabitats. We speculate that this feature may be necessary to complete the process of sympatric speciation in nature.


Subject(s)
Cichlids/genetics , Gene Flow , Genetic Speciation , Sympatry , Animals , Cameroon , Cichlids/classification , Genetics, Population , Genomic Library , Lakes , Phylogeny , Reproductive Isolation
6.
Zootaxa ; 3846(4): 577-83, 2014 Aug 05.
Article in English | MEDLINE | ID: mdl-25112268

ABSTRACT

A new deep-bodied Hylopanchax species is described from the northwestern Congo basin. Hylopanchax paucisquamatus, new species, was collected in the Odzala-Kokoua National Park in the Likouala River drainage of the Republic of Congo. It differs from its congeners, including the deep-bodied H. leki and H. ndeko, by a unique combination of morphological characters, including low number of mid-longitudinal and transverse scales, number of dorsal-fin rays, and position of dorsal-fin origin in relation to anal-fin. It is the only deep-bodied species currently known outside the Kasaï River drainage.


Subject(s)
Cyprinodontiformes/anatomy & histology , Cyprinodontiformes/classification , Animals , Congo , Female , Male
7.
Syst Biol ; 62(3): 351-65, 2013 May 01.
Article in English | MEDLINE | ID: mdl-23302956

ABSTRACT

Despite African rivers containing high species diversity, continental-scale studies investigating the mechanisms generating biological diversity of African riverine faunas are limited compared with lacustrine systems. To investigate the build-up of diversity in a tropical aquatic continental radiation, we test different models of lineage diversification and reconstruct the biogeographic history in a species-rich siluriform genus, Synodontis (~130 species), with a broad distribution across all major tropical African drainage basins. The resulting robust species-level phylogeny (~60% complete, based on a multigene data set) exhibits a near constant rate of lineage accumulation throughout the mid-Cenozoic to recent, irrespective of missing species and despite the changing environmental conditions that were prevalent during this time period. This pattern contrasts with the findings for species-level diversification of large clades that commonly show an early burst of cladogenesis followed by declining rates through time. The identification of distinct biogeographic clades demonstrates a correlation between river hydrology and cladogenesis, although there is evidence of recent repeat dispersal into the southern range of the focal group. We conclude that diverse freshwater fish radiations with tropical continental distributions represent important organisms to test hypotheses of diversification and investigate the effects of palaeo-landscapes and climates on present day biodiversity.


Subject(s)
Animal Distribution , Catfishes/classification , Catfishes/genetics , Evolution, Molecular , Genetic Speciation , Africa , Animals , Bayes Theorem , Biodiversity , Biological Evolution , Cell Nucleus/genetics , DNA/analysis , DNA, Mitochondrial/analysis , Likelihood Functions , Models, Genetic , Molecular Sequence Data , Phylogeny , Polymerase Chain Reaction , Rivers , Sequence Alignment , Sequence Analysis, DNA
8.
Mol Phylogenet Evol ; 65(2): 362-79, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22728909

ABSTRACT

The cyprinid tribe Labeonini (sensuRainboth, 1991) is a large group of freshwater fishes containing around 40 genera and 400 species. They are characterized by an amazing diversity of modifications to their lips and associated structures. In this study, a total of 34 genera and 142 species of putative members of this tribe, which represent most of the generic diversity and more than one third of the species diversity of the group, were sampled and sequenced for four nuclear genes and five mitochondrial genes (totaling 9465bp). Phylogenetic relationships and subdivision of this tribe were investigated and the placement and status of most genera are discussed. Partitioned maximum likelihood analyses were performed based on the nuclear dataset, mitochondrial dataset, combined dataset, and the dataset for each nuclear gene. Inclusion of the genera Paracrossochilus, Barbichthys, Thynnichthys, and Linichthys in the Labeonini was either confirmed or proposed for the first time. None of the genera Labeo, Garra, Bangana, Cirrhinus, and Crossocheilus are monophyletic. Taxonomic revisions of some genera were made: the generic names Gymnostomus Heckel, 1843, Ageneiogarra Garman, 1912 and Gonorhynchus McClelland, 1839 were revalidated; Akrokolioplax Zhang and Kottelat, 2006 becomes a junior synonym of Gonorhynchus; the species Osteochilus nashii was found to be a member of the barbin genus Osteochilichthys. Five historical hypotheses on the classification of the Labeonini were tested and rejected. We proposed to subdivide the tribe, which is strongly supported as monophyletic, into four subtribes: Labeoina, Garraina, Osteochilina, and Semilabeoina. The taxa included in each subtribe were listed and those taxa that need taxonomic revision were discussed.


Subject(s)
Cyprinidae/classification , Phylogeny , Animals , Biological Evolution , Cell Nucleus/genetics , Cyprinidae/genetics , Genes, Mitochondrial , Likelihood Functions , Sequence Analysis, DNA
9.
Neotrop. ichthyol ; 6(3): 293-300, 2008. ilus, mapas, tab
Article in English | LILACS | ID: lil-495155

ABSTRACT

Pseudobunocephalus, a new genus of small banjo catfishes (< 80 mm SL), is distinguished from all other aspredinid genera by the following unique features: mandibular teeth restricted to a patch near symphysis of lower jaw; no contact between the metapterygoid and quadrate; autopalatine posteriorly forked with two separate cartilages; absence of the fourth pharyngobranchial; absence of gill rakers on all branchial arches; and lack of bifid hemal spines on vertebrae that articulate with anal-fin pterygiophores. As defined Pseudobunocephalus contain a new species, P. lundbergi from the Orinoco River basin, along with five other species previously assigned to the genus Bunocephalus: P. amazonicus, P. bifidus, P. iheringii, P. quadriradiatus, and P. rugosus.


Pseudobunocephalus, gênero novo (< 80 milímetros SL), se distingue de todos os outros gêneros de Aspredinidae pelas seguintes características: dentes mandibulares limitados a uma faixa perto da sínfise mandíbular; contato entre o metapterigóide e o quadrado ausente; autopalatino furcado posteriormente com duas cartilagens separadas; ausência do quarto faringobranquial; ausência de rastros em todos os arcos branquiais; e falta de espinhos hemais bífidos nas vértebras que se articulam com os pterigióforos da nadadeira anal. Conforme definido Pseudobunocephalus contém uma nova espécie, P. lundbergi da bacia do rio Orinoco, além de outras cinco espécies previamente atribuídas ao gênero Bunocephalus: P. amazonicus, P. bifidus, P. iheringii, P. quadriradiatus e P. rugosus.


Subject(s)
Animals , Species Specificity , Catfishes/classification , Biodiversity , Fishes , Tropical Ecosystem
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