ABSTRACT
The Hongyuan breed Yak (Bos grunniens) belongs to a member of t the subfamily Bovinae. We provide a complete mitogenome of B. grunniens and analyze its phylogenetic relationship with other related species. Its mitogenome is a circular molecule with 16,322 bp in size, including 13 protein coding genes, 22 tRNA genes, 2 rRNA genes, and a non-coding control region (D-loop, CR) that are conserved in most Bovidae mitogenomes. The total base composition of the B. grunniens mitogenome is 33.67% A, 27.29% T, 25.84% C, and 13.20% G. The gene composition, structure and the arrangement for B. grunniens are similar to those of most other Bovidae species. Phylogenetic analysis of mitochondrial genomes of 30 close species with Bayesian inference and maximum likelihood based on 13 protein-coding genes indicated that B. grunniens breed Hongyuan is more closely related to B. grunniens breed Qinghai Plateau than to B. grunniens breed Xuedong and B. grunniens breed Maiwa. The complete mitogenome of B. grunniens breed Hongyuan provides a potentially useful resource for further exploration of the taxonomic status and phylogenetic relationships of Bovinae and related species.