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1.
Comput Biol Med ; 174: 108400, 2024 May.
Article in English | MEDLINE | ID: mdl-38613888

ABSTRACT

Accurate liver tumor segmentation is crucial for aiding radiologists in hepatocellular carcinoma evaluation and surgical planning. While convolutional neural networks (CNNs) have been successful in medical image segmentation, they face challenges in capturing long-term dependencies among pixels. On the other hand, Transformer-based models demand a high number of parameters and involve significant computational costs. To address these issues, we propose the Spatial and Spectral-learning Double-branched Aggregation Network (S2DA-Net) for liver tumor segmentation. S2DA-Net consists of a double-branched encoder and a decoder with a Group Multi-Head Cross-Attention Aggregation (GMCA) module, Two branches in the encoder consist of a Fourier Spectral-learning Multi-scale Fusion (FSMF) branch and a Multi-axis Aggregation Hadamard Attention (MAHA) branch. The FSMF branch employs a Fourier-based network to learn amplitude and phase information, capturing richer features and detailed information without introducing an excessive number of parameters. The FSMF branch utilizes a Fourier-based network to capture amplitude and phase information, enriching features without introducing excessive parameters. The MAHA branch incorporates spatial information, enhancing discriminative features while minimizing computational costs. In the decoding path, a GMCA module extracts local information and establishes long-term dependencies, improving localization capabilities by amalgamating features from diverse branches. Experimental results on the public LiTS2017 liver tumor datasets show that the proposed segmentation model achieves significant improvements compared to the state-of-the-art methods, obtaining dice per case (DPC) 69.4 % and global dice (DG) 80.0 % for liver tumor segmentation on the LiTS2017 dataset. Meanwhile, the pre-trained model based on the LiTS2017 datasets obtain, DPC 73.4 % and an DG 82.2 % on the 3DIRCADb dataset.


Subject(s)
Liver Neoplasms , Neural Networks, Computer , Tomography, X-Ray Computed , Humans , Liver Neoplasms/diagnostic imaging , Tomography, X-Ray Computed/methods , Deep Learning , Liver/diagnostic imaging , Carcinoma, Hepatocellular/diagnostic imaging
2.
Front Plant Sci ; 14: 1123410, 2023.
Article in English | MEDLINE | ID: mdl-37051074

ABSTRACT

The segmentation of pepper leaves from pepper images is of great significance for the accurate control of pepper leaf diseases. To address the issue, we propose a bidirectional attention fusion network combing the convolution neural network (CNN) and Swin Transformer, called BAF-Net, to segment the pepper leaf image. Specially, BAF-Net first uses a multi-scale fusion feature (MSFF) branch to extract the long-range dependencies by constructing the cascaded Swin Transformer-based and CNN-based block, which is based on the U-shape architecture. Then, it uses a full-scale feature fusion (FSFF) branch to enhance the boundary information and attain the detailed information. Finally, an adaptive bidirectional attention module is designed to bridge the relation of the MSFF and FSFF features. The results on four pepper leaf datasets demonstrated that our model obtains F1 scores of 96.75%, 91.10%, 97.34% and 94.42%, and IoU of 95.68%, 86.76%, 96.12% and 91.44%, respectively. Compared to the state-of-the-art models, the proposed model achieves better segmentation performance. The code will be available at the website: https://github.com/fangchj2002/BAF-Net.

3.
Comput Biol Med ; 152: 106352, 2023 01.
Article in English | MEDLINE | ID: mdl-36481761

ABSTRACT

Liver segmentation is a critical step in liver cancer diagnosis and surgical planning. The U-Net's architecture is one of the most efficient deep networks for medical image segmentation. However, the continuous downsampling operators in U-Net causes the loss of spatial information. To solve these problems, we propose a global context and hybrid attention network, called GCHA-Net, to adaptive capture the structural and detailed features. To capture the global features, a global attention module (GAM) is designed to model the channel and positional dimensions of the interdependencies. To capture the local features, a feature aggregation module (FAM) is designed, where a local attention module (LAM) is proposed to capture the spatial information. LAM can make our model focus on the local liver regions and suppress irrelevant information. The experimental results on the dataset LiTS2017 show that the dice per case (DPC) value and dice global (DG) value of liver were 96.5% and 96.9%, respectively. Compared with the state-of-the-art models, our model has superior performance in liver segmentation. Meanwhile, we test the experiment results on the 3Dircadb dataset, and it shows our model can obtain the highest accuracy compared with the closely related models. From these results, it can been seen that the proposed model can effectively capture the global context information and build the correlation between different convolutional layers. The code is available at the website: https://github.com/HuaxiangLiu/GCAU-Net.


Subject(s)
Liver Neoplasms , Humans , Liver Neoplasms/diagnostic imaging , Image Processing, Computer-Assisted
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