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1.
FEBS J ; 289(16): 4680-4703, 2022 08.
Article in English | MEDLINE | ID: mdl-34102019

ABSTRACT

Transglutaminases are protein cross-linking and protein-modifying enzymes that have attracted considerable interest due to their causal involvement in various diseases and versatility in industrial applications. In particular, microbial transglutaminases (MTG) from Streptomyces bacteria have managed in recent years to evolve from simple food additives to specialized enzymes for the site-directed modification of therapeutic proteins. The review summarizes relevant studies from the beginning dealing with the occurrence, production, structure, catalysis, and substrate molecules of MTG enzymes. It also addresses biotechnological procedures with MTG from S. mobaraensis (SmMTG) as the most prominent representative in focus. Reassessment of the available data revealed unexpected insights into catalysis of SmMTG and other transglutaminases, suggesting selection of glutamine donor proteins by subsites at the front vestibule and the existence of distinct lysine pockets. Flexibility of the SmMTG-accessible glutamine donor substrate regions seems to be more important than the glutamine environment. Nevertheless, residues in close vicinity to glutamines also determine interaction with the SmMTG subsites. The apparent lack of subsites for lysine donor proteins suggests self-assembly of the substrate proteins prior to enzymatic cross-linking. The study of natural substrate proteins, especially their mutual interaction, is proposed to further illuminate catalysis of SmMTG. To this end, structure and function of the characterized substrate proteins from S. mobaraensis are discussed in conclusion.


Subject(s)
Streptomyces , Bacterial Proteins/metabolism , Glutamine/metabolism , Lysine/metabolism , Substrate Specificity , Transglutaminases/metabolism
2.
J Nat Prod ; 83(10): 2983-2995, 2020 10 23.
Article in English | MEDLINE | ID: mdl-32998509

ABSTRACT

Streptomyces mobaraensis produces the papain inhibitor SPI consisting of a 12 kDa protein and small active compounds (SPIac). Purification of the papain inhibitory compounds resulted in four diverse chymostatin derivatives that were characterized by NMR and MS analysis. Chymostatins are hydrophobic tetrapeptide aldehydes from streptomycetes, e.g., S. lavendulae and S. hygroscopicus, that reverse chymosin-mediated angiotensin activation and inhibit other serine and cysteine proteases. Chymotrypsin and papain were both inhibited by the SPIac compounds in the low nanomolar range. SPIac differs from the characterized chymostatins by the exchange of phenylalanine for tyrosine. The crystal structure of one of these chymostatin variants confirmed its molecular structure and revealed a S-configured hemithioacetal bond with the catalytic Cys25 thiolate as well as close interactions with hydrophobic S1 and S2 subsite amino acids. A model for chymostatin biosynthesis is provided based on the discovery of clustered genes encoding several putative nonribosomal peptide synthetases; among them, there is the unusual CstF enzyme that accommodates two canonical amino acid activation domains as well as three peptide carrier protein domains.


Subject(s)
Enzyme Inhibitors/pharmacology , Oligopeptides , Papain/antagonists & inhibitors , Streptomyces , Aldehydes , Amino Acid Sequence , Biosynthetic Pathways , Hydroxylation , Models, Molecular , Molecular Structure , Peptide Synthases , Substrate Specificity
3.
Biochem J ; 477(13): 2595-2606, 2020 07 17.
Article in English | MEDLINE | ID: mdl-32602533

ABSTRACT

The Dispase autolysis-inducing protein (DAIP) from Streptomyces mobaraensis attracts M4 metalloproteases, which results in inhibition and autolysis of bacillolysin (BL) and thermolysin (TL). The present study shows that aureolysin (AL) from Staphylococcus aureus and pseudolysin (LasB) from Pseudomonas aeruginosa are likewise impaired by DAIP. Complete inhibition occurred when DAIP significantly exceeded the amount of the target protease. At low DAIP concentrations, AL and BL performed autolysis, while LasB and TL degradation required reductants or detergents that break intramolecular disulfide bonds or change the protein structure. Site directed mutagenesis of DAIP and removal of an exposed protein loop either influenced binding or inhibition of AL and TL but had no effect on LasB and BL. The Y170A and Δ239-248 variants had completely lost affinity for TL and AL. The exchange of Asn-275 also impaired the interaction of DAIP with AL. In contrast, DAIP Phe-297 substitution abolished inhibition and autolysis of both target proteases but still allowed complex formation. Our results give rise to the conclusion that other, yet unknown DAIP amino acids inactivate LasB and BL. Obviously, various bacteria in the same habitat caused Streptomyces mobaraensis to continuously optimize DAIP in inactivating the tackling metalloproteases.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Metalloendopeptidases/chemistry , Metalloendopeptidases/metabolism , Amino Acids/chemistry , Amino Acids/metabolism , Autolysis/metabolism , Calorimetry , Chromatography, Gel , Circular Dichroism , Endopeptidases/chemistry , Endopeptidases/metabolism , Metalloproteases/chemistry , Metalloproteases/metabolism , Staphylococcus aureus/enzymology
4.
FEBS J ; 287(4): 708-720, 2020 02.
Article in English | MEDLINE | ID: mdl-31420998

ABSTRACT

Streptomyces mobaraensis is a key player for the industrial production of the protein cross-linking enzyme microbial transglutaminase (MTG). Extra-cellular activation of MTG by the transglutaminase-activating metalloprotease (TAMP) is regulated by the TAMP inhibitory protein SSTI that belongs to the large Streptomyces subtilisin inhibitor (SSI) family. Despite decades of SSI research, the binding site for metalloproteases such as TAMP remained elusive in most of the SSI proteins. Moreover, SSTI is a MTG substrate, and the preferred glutamine residues for SSTI cross-linking are not determined. To address both issues, that is, determination of the TAMP and the MTG glutamine binding sites, SSTI was modified by distinct point mutations as well as elongation or truncation of the N-terminal peptide by six and three residues respectively. Structural integrity of the mutants was verified by the determination of protein melting points and supported by unimpaired subtilisin inhibitory activity. While exchange of single amino acids could not disrupt decisively the SSTI TAMP interaction, the N-terminally shortened variants clearly indicated the highly conserved Leu40-Tyr41 as binding motif for TAMP. Moreover, enzymatic biotinylation revealed that an adjacent glutamine pair, upstream from Leu40-Tyr41 in the SSTI precursor protein, is the preferred binding site of MTG. This extension peptide disturbs the interaction with TAMP. The structure of SSTI was furthermore determined by X-ray crystallography. While no structural data could be obtained for the N-terminal peptide due to flexibility, the core structure starting from Tyr41 could be determined and analysed, which superposes well with SSI-family proteins. ENZYMES: Chymotrypsin, EC3.4.21.1; griselysin (SGMPII, SgmA), EC3.4.24.27; snapalysin (ScNP), EC3.4.24.77; streptogrisin-A (SGPA), EC3.4.21.80; streptogrisin-B (SGPB), EC3.4.21.81; subtilisin BPN', EC3.4.21.62; transglutaminase, EC2.3.2.13; transglutaminase-activating metalloprotease (TAMP), EC3.4.-.-; tri-/tetrapeptidyl aminopeptidase, EC3.4.11.-; trypsin, EC3.4.21.4. DATABASES: The atomic coordinates and structure factors (PDB 6I0I) have been deposited in the Protein Data Bank (http://www.rcsb.org).


Subject(s)
Bacterial Proteins/chemistry , Glutamine/chemistry , Streptomyces/enzymology , Transglutaminases/chemistry , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Binding Sites , Biotinylation , Cloning, Molecular , Crystallography, X-Ray , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Glutamine/metabolism , Kinetics , Models, Molecular , Point Mutation , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Interaction Domains and Motifs , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Deletion , Sequence Homology, Amino Acid , Streptomyces/genetics , Substrate Specificity , Transglutaminases/genetics , Transglutaminases/metabolism
5.
J Inorg Biochem ; 202: 110878, 2020 01.
Article in English | MEDLINE | ID: mdl-31698184

ABSTRACT

Chaplins are amphiphilic proteins coating the surface of aerial hyphae under formation of amyloid-like rodlet layers in streptomycetes. The long chaplin from Streptomyces mobaraensis, Sm-Chp1, harbors extended histidine-rich stretches allowing protein attachment to metal affinity resins. A comprehensive BLASTP search revealed similarity with many putative metal-binding proteins but the deduced sequence motifs were not shared by histidine-rich domains of well-studied proteins. Biochemical analyses showed affinity of Sm-Chp1 for Ni2+, Cu2+ and Zn2+, a binding capacity of 7-8 metal ions, and dissociation constants in a double digit micromolar range. The occurrence of genes for membrane-bound metal transporters and several intra- and extracellular metalloenzymes in the genome of S. mobaraensis suggests that Sm-Chp1 may be a novel type of translocase shifting metals across the rodlet layer from the environment into the cell wall.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Histidine/metabolism , Metals, Heavy/metabolism , Streptomyces/metabolism , Amino Acid Sequence , Computational Biology , Sequence Homology , Streptomyces/growth & development
6.
FEBS Lett ; 593(15): 1944-1956, 2019 08.
Article in English | MEDLINE | ID: mdl-31155711

ABSTRACT

Distinct streptomycetes such as Streptomyces mobaraensis produce the protein cross-linking enzyme transglutaminase. Bioinformatic analysis predicted the occurrence of seven sortases exerting transpeptidation reactions similarly to transglutaminase. Here, we report the production and characterization of sortase E2 (Sm-SrtE2) solubilized by removal of its membrane anchor domain. Sm-SrtE2 activity was measured using pentapeptides predicted to be cell wall sorting signals of putative sortase substrate proteins. Preferred linkage to Gly3 by Sm-SrtE2 was in the order LAETG>>LAHTG>>LAQTG~LANTG>LARTG. Chaplin 1 from S. mobaraensis was further demonstrated to be an excellent substrate of both the intrinsic Sm-SrtE2 and transglutaminase. The unexpected discovery showing Gln-62 and Gln-65 of Δ1-50 -Sm-SrtE2 as transglutaminase cross-linking sites suggests that low enzyme stability might be due to anchor domain truncation and a disordered N terminus.


Subject(s)
Aminoacyltransferases/chemistry , Aminoacyltransferases/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Cysteine Endopeptidases/chemistry , Cysteine Endopeptidases/metabolism , Oligopeptides/metabolism , Streptomyces/enzymology , Aminoacyltransferases/genetics , Bacterial Proteins/genetics , Cell Wall/metabolism , Cysteine Endopeptidases/genetics , Glutamine/metabolism , Oligopeptides/chemistry , Protein Sorting Signals , Solubility , Transglutaminases/genetics , Transglutaminases/metabolism
7.
Chembiochem ; 20(18): 2411-2419, 2019 09 16.
Article in English | MEDLINE | ID: mdl-31044494

ABSTRACT

Microbial transglutaminase (mTG) has recently emerged as a powerful tool for antibody engineering. In nature, it catalyzes the formation of amide bonds between glutamine side chains and primary amines. Being applied to numerous research fields from material sciences to medicine, mTG enables efficient site-specific conjugation of molecular architectures that possess suitable recognition motifs. In monoclonal antibodies, the lack of native transamidation sites is bypassed by incorporating specific peptide recognition sequences. Herein, we report a rapid and efficient mTG-catalyzed bioconjugation that relies on a novel recognition motif derived from its native substrate Streptomyces papain inhibitor (SPIP ). Improved reaction kinetics compared to commonly applied sequences were demonstrated for model peptides and for biotinylation of Her2-targeting antibody trastuzumab variants. Moreover, an antibody-drug conjugate assembled from trastuzumab that was C-terminally tagged with the novel recognition sequence revealed a higher payload-antibody ratio than the reference antibody.


Subject(s)
Antineoplastic Agents, Immunological/chemistry , Bacterial Proteins/chemistry , Immunoconjugates/chemistry , Oligopeptides/chemistry , Transglutaminases/chemistry , Trastuzumab/chemistry , Animals , Antineoplastic Agents, Immunological/pharmacology , Antineoplastic Agents, Immunological/toxicity , CHO Cells , Cell Line, Tumor , Cricetulus , Humans , Immunoconjugates/toxicity , Oligopeptides/pharmacology , Oligopeptides/toxicity , Protein Engineering , Streptomyces/enzymology , Substrate Specificity , Trastuzumab/pharmacology , Trastuzumab/toxicity
8.
FEBS J ; 285(24): 4684-4694, 2018 12.
Article in English | MEDLINE | ID: mdl-30318745

ABSTRACT

The protein cross-linking enzyme transglutaminase from Streptomyces mobaraensis (MTG) is frequently used to modify therapeutic proteins. In order to reveal the binding mode of glutamine donor substrates, we have now crystallized MTG covalently linked to large inhibitory peptides. A series of peptide structures were examined but DIPIGSKMTG, which was chloroacetylated at serine, was the only inhibitory molecule that resulted in an interpretable density map. We found that, besides the warhead (modified Ser6), Ile4 and Gly5 of the inhibitory peptide occupy the tight but extended hydrophobic bottom of the MTG-binding cleft. Both termini of the peptide protrude along the cleft walls almost perpendicular to the bottom of the extended cleft. This peptide model suggests a zipper-like cross-linking mechanism of self-assembled substrate proteins by MTG.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Glutamine/metabolism , Peptide Fragments/pharmacology , Streptomyces/enzymology , Transglutaminases/chemistry , Transglutaminases/metabolism , Binding Sites , Crystallography, X-Ray , Models, Molecular , Protein Binding , Protein Conformation
9.
FEBS J ; 285(22): 4246-4264, 2018 11.
Article in English | MEDLINE | ID: mdl-30171661

ABSTRACT

The Dispase autolysis-inducing protein (DAIP) is produced by Streptomyces mobaraensis to disarm neutral metalloproteases by decomposition. The absence of a catalytic protease domain led to the assumption that the seven-bladed ß-propeller protein DAIP causes structural modifications, thereby triggering autolysis. Determination of protein complexes consisting of DAIP and thermolysin or DAIP and a nonfunctional E138A bacillolysin variant supported this postulation. Protein twisting was indicated by DAIP-mediated inhibition of thermolysin while bacillolysin underwent immediate autolysis under the same conditions. Interestingly, an increase in SYPRO orange fluorescence allowed tracking of the fast degradation process. Similarly rapid autolysis of thermolysin mediated by DAIP was only observed upon the addition of amphiphilic compounds, which probably amplify the induced structural changes. DAIP further caused degradation of FITC-labeled E138A bacillolysin by trypsin, as monitored by a linear decrease in fluorescence polarization. The kinetic model, calculated from the obtained data, suggested a three-step mechanism defined by (a) fast DAIP-metalloprotease complex formation, (b) slower DAIP-mediated protein twisting, and (c) fragmentation. These results were substantiated by crystallized DAIP attached to a C-terminal helix fragment of thermolysin. Structural superposition of the complex with thermolysin is indicative of a conformational change upon binding to DAIP. Importantly, the majority of metalloproteases, also including homologs from various pathogens, are highly conserved at the autolysis-prone peptide bonds, suggesting their susceptibility to DAIP-mediated decomposition, which may offer opportunities for pharmaceutical applications. DATABASES: The atomic coordinates and structure factors (PDB ID: 6FHP) have been deposited in the Protein Data Bank (http://www.pdb.org/). ENZYMES: Aureolysin, EC 3.4.24.29; bacillolysin (Dispase, Gentlyase), EC 3.4.24.28; lasB (elastase), EC 3.4.24.4; subtilisin, EC 3.4.21.62; thermolysin, EC 3.4.24.27; transglutaminase, EC 2.3.2.13; trypsin, EC 3.4.21.4; vibriolysin (hemagglutinin(HA)/protease), EC 3.4.24.25.


Subject(s)
Bacterial Proteins/metabolism , Endopeptidases/metabolism , Metalloendopeptidases/metabolism , Metalloproteases/metabolism , Streptomyces/enzymology , Thermolysin/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Catalysis , Crystallography, X-Ray , Endopeptidases/chemistry , Metalloendopeptidases/chemistry , Metalloproteases/chemistry , Models, Molecular , Protein Conformation , Sequence Homology , Thermolysin/chemistry
10.
Chemistry ; 24(57): 15195-15200, 2018 Oct 12.
Article in English | MEDLINE | ID: mdl-30047596

ABSTRACT

Microbial transglutaminase from Streptomyces mobaraensis (mTG) has emerged as a useful biotechnological tool due to its ability to crosslink a side chain of glutamine and primary amines. To date, the substrate specificity of mTG is not fully understood, which poses an obvious challenge when mTG is used to address novel targets. To that end, a viable strategy providing an access to tailor-made transglutaminases is required. This work reports an ultrahigh-throughput screening approach based on yeast surface display and fluorescence-activated cell sorting (FACS) that enabled the evolution of microbial transglutaminase towards enhanced activity. Five rounds of FACS screening followed by recombinant expression of the most potent variants in E. coli yielded variants that possessed, compared to the wild type enzyme, improved enzymatic performance and labeling behavior upon conjugation with an engineered therapeutic anti-HER2 antibody. This robust and generally applicable platform enables tailoring of the catalytic efficiency of mTG.


Subject(s)
Directed Molecular Evolution/methods , Protein Engineering/methods , Streptomyces/enzymology , Streptomyces/genetics , Transglutaminases/genetics , Escherichia coli/genetics , Escherichia coli/metabolism , Humans , Immunoconjugates/genetics , Immunoconjugates/metabolism , Models, Molecular , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Spectrometry, Fluorescence , Streptomyces/metabolism , Transglutaminases/metabolism
11.
J Biotechnol ; 281: 115-122, 2018 Sep 10.
Article in English | MEDLINE | ID: mdl-29981445

ABSTRACT

Transglutaminase from Streptomyces mobaraensis (MTG) is an important enzyme for numerous industrial applications. Recombinant production requires proteolytic activation of the zymogen. The study provides a convenient procedure for the preparation of the transglutaminase-activating metalloprotease (TAMP) in Escherichia coli. In contrast to wtTAMP, rTAMP exhibited the P domain of convertases as molecular mass of 55.7 kDa suggested. Protein integrity was beneficially influenced by 2-5 mM CaCl2. Study of pH and temperature optima assigned rTAMP to the neutral metalloproteases, more heat-resistant than Dispase but not thermolysin. Zinc had no inhibiting effect but 3.1 µM EDTA completely reduced activity of 5 nM TAMP. MTG, exceeding concentration of rTAMP by three orders of magnitude, was largely activated within few minutes. The kinetic parameters KM (1.31 ±â€¯0.05 mM) and kcat (135 ±â€¯4.3 s-1), monitored by isothermal titration calorimetry (ITC), further highlighted catalytic efficiency (103,053 M-1 s-1) of rTAMP and rapid processing of MTG. ITC even revealed that inhibition of rTAMP by its intrinsic inhibitory protein SSTI was an enthalpy-driven process resulting in Kd of 199 ±â€¯37.9 nM. The production procedure of rTAMP in E. coli closes the gap between production and application of recombinant MTG and may enhance relevance of MTG-mediated reactions in pharmaceutical processes.


Subject(s)
Bacterial Proteins , Escherichia coli/metabolism , Metalloproteases , Streptomyces/enzymology , Transglutaminases , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Base Sequence , Escherichia coli/genetics , Metalloproteases/genetics , Metalloproteases/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Analysis, DNA , Transglutaminases/genetics , Transglutaminases/metabolism
12.
Protein Sci ; 27(5): 910-922, 2018 05.
Article in English | MEDLINE | ID: mdl-29430769

ABSTRACT

Transglutaminase from Streptomyces mobaraensis (MTG) has become a powerful tool to covalently and highly specifically link functional amines to glutamine donor sites of therapeutic proteins. However, details regarding the mechanism of substrate recognition and interaction of the enzyme with proteinaceous substrates still remain mostly elusive. We have determined the crystal structure of the Streptomyces papain inhibitory protein (SPIp ), a substrate of MTG, to study the influence of various substrate amino acids on positioning glutamine to the active site of MTG. SPIp exhibits a rigid, thermo-resistant double-psi-beta-barrel fold that is stabilized by two cysteine bridges. Incorporation of biotin cadaverine identified Gln-6 as the only amine acceptor site on SPIp accessible for MTG. Substitution of Lys-7 demonstrated that small and hydrophobic residues in close proximity to Gln-6 favor MTG-mediated modification and are likely to facilitate introduction of the substrate into the front vestibule of MTG. Moreover, exchange of various surface residues of SPIp for arginine and glutamate/aspartate outside the glutamine donor region influences the efficiency of modification by MTG. These results suggest the occurrence of charged contact areas between MTG and the acyl donor substrates beyond the front vestibule, and pave the way for protein engineering approaches to improve the properties of artificial MTG-substrates used in biomedical applications.


Subject(s)
Streptomyces/enzymology , Transglutaminases/chemistry , Transglutaminases/metabolism , Models, Molecular , Protein Conformation , Substrate Specificity
13.
J Biol Chem ; 291(39): 20417-26, 2016 09 23.
Article in English | MEDLINE | ID: mdl-27493205

ABSTRACT

Transglutaminase from Streptomyces mobaraensis (MTG) is an important enzyme for cross-linking and modifying proteins. An intrinsic substrate of MTG is the dispase autolysis-inducing protein (DAIP). The amino acid sequence of DAIP contains 5 potential glutamines and 10 lysines for MTG-mediated cross-linking. The aim of the study was to determine the structure and glutamine cross-linking sites of the first physiological MTG substrate. A production procedure was established in Escherichia coli BL21 (DE3) to obtain high yields of recombinant DAIP. DAIP variants were prepared by replacing four of five glutamines for asparagines in various combinations via site-directed mutagenesis. Incorporation of biotin cadaverine revealed a preference of MTG for the DAIP glutamines in the order of Gln-39 ≫ Gln-298 > Gln-345 ∼ Gln-65 ≫ Gln-144. In the structure of DAIP the preferred glutamines do cluster at the top of the seven-bladed ß-propeller. This suggests a targeted cross-linking of DAIP by MTG that may occur after self-assembly in the bacterial cell wall. Based on our biochemical and structural data of the first physiological MTG substrate, we further provide novel insight into determinants of MTG-mediated modification, specificity, and efficiency.


Subject(s)
Bacterial Proteins/metabolism , Streptomyces/metabolism , Transglutaminases/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Streptomyces/chemistry , Streptomyces/genetics , Transglutaminases/chemistry , Transglutaminases/genetics
14.
PLoS One ; 11(2): e0149145, 2016.
Article in English | MEDLINE | ID: mdl-26886195

ABSTRACT

Streptomyces mobaraensis DSM 40847 secretes transglutaminase that cross-links proteins via γ-glutamyl-ε-lysine isopeptide bonds. Characterized substrates are inhibitory proteins acting against various serine, cysteine and metalloproteases. In the present study, the bacterial secretome was examined to uncover additional transglutaminase substrates. Fractional ethanol precipitation of the exported proteins at various times of culture growth, electrophoresis of the precipitated proteins, and sequencing of a 39 kDa protein by mass spectrometry revealed the novel beta-lactamase Sml-1. As indicated by biotinylated probes, Sml-1, produced in E. coli, exhibits glutamine and lysine residues accessible for transglutaminase. The chromogenic cephalosporin analogue, nitrocefin, was hydrolyzed by Sml-1 with low velocity. The obtained Km and kcat values of the recombinant enzyme were 94.3±1.8 µM and 0.39±0.03 s(-1), respectively. Penicillin G and ampicillin proved to be weak inhibitors of nitrocefin hydrolysis (Ki of 0.1 mM and 0.18 mM). Negligible influence of metals on ß-lactamase activity ruled out that Sml-1 is a Zn2+-dependent class B beta-lactamase. Rather, sequence motifs such as SITK, YSN, and HDG forming the active core in a hypothetical structure may be typical for class C beta-lactamases. Based on the results, we assume that the novel transglutaminase substrate ensures undisturbed growth of aerial hyphae in Streptomyces mobaraensis by trapping and inactivating hostile beta-lactam antibiotics.


Subject(s)
Cross-Linking Reagents/metabolism , Streptomyces/enzymology , Transglutaminases/metabolism , beta-Lactamases/metabolism , Amino Acid Motifs , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Biotinylation , Catalytic Domain , Escherichia coli/metabolism , Extracellular Space/metabolism , Kinetics , Models, Molecular , Molecular Sequence Data , Molecular Weight , Recombinant Proteins/biosynthesis , Substrate Specificity , beta-Lactamases/chemistry
15.
Angew Chem Int Ed Engl ; 54(45): 13420-4, 2015 Nov 02.
Article in English | MEDLINE | ID: mdl-26367875

ABSTRACT

Based on the crystal structure of a natural protein substrate for microbial transglutaminase, an enzyme that catalyzes protein crosslinking, a recognition motif for site-specific conjugation was rationally designed. Conformationally locked by an intramolecular disulfide bond, this structural mimic of a native conjugation site ensured efficient conjugation of a reporter cargo to the therapeutic monoclonal antibody cetuximab without erosion of its binding properties.


Subject(s)
Cetuximab/chemistry , Transglutaminases/chemistry , Animals , CHO Cells , Cell Line, Tumor , Cetuximab/metabolism , Cricetulus , Disulfides/chemistry , Disulfides/metabolism , Humans , Models, Molecular , Protein Conformation , Transglutaminases/metabolism
16.
Antimicrob Agents Chemother ; 57(7): 3388-91, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23587952

ABSTRACT

A novel papain inhibitory protein (SPI) from Streptomyces mobaraensis was studied to measure its inhibitory effect on bacterial cysteine protease activity (Staphylococcus aureus SspB) and culture supernatants (Porphyromonas gingivalis, Bacillus anthracis). Further, growth of Bacillus anthracis, Staphylococcus aureus, Pseudomonas aeruginosa, and Vibrio cholerae was completely inhibited by 10 µM SPI. At this concentration of SPI, no cytotoxicity was observed. We conclude that SPI inhibits bacterial virulence factors and has the potential to become a novel therapeutic treatment against a range of unrelated pathogenic bacteria.


Subject(s)
Bacterial Proteins/pharmacology , Cysteine Proteases/metabolism , Cysteine Proteinase Inhibitors/pharmacology , Papain/antagonists & inhibitors , Streptomyces/chemistry , Bacillus anthracis/drug effects , Bacillus anthracis/growth & development , Bacterial Proteins/metabolism , Porphyromonas gingivalis/drug effects , Porphyromonas gingivalis/growth & development , Pseudomonas aeruginosa/drug effects , Pseudomonas aeruginosa/growth & development , Staphylococcus aureus/drug effects , Staphylococcus aureus/growth & development , Vibrio cholerae/drug effects , Vibrio cholerae/growth & development
17.
Biomacromolecules ; 14(5): 1564-71, 2013 May 13.
Article in English | MEDLINE | ID: mdl-23495872

ABSTRACT

Nucleus pulposus from the porcine intervertebral disc was separated chromatographically to discover substrates of microbial transglutaminase. Highly purified proteins were prepared, among them type II collagen, the major protein of the nucleus pulposus. Determination of substrates was performed by transglutaminase-mediated incorporation of biotinylated probes displaying several glutamine and lysine donor proteins. Type II collagen was only labeled if smaller nucleus pulposus proteins were present. One of the modulating proteins was serotransferrin, a lysine donor substrate of bacterial transglutaminase. An additional substrate was the carboxy-terminal propeptide of type II collagen, chondrocalcin. Chondrocalcin, a regulator of type II collagen fibrillogenesis, occurs abundantly in juvenile cartilage and nucleus pulposus. Accordingly, the protein may be regarded as an excellent additive for the preparation of injectable stem cells in nucleus pulposus-like matrices cross-linked by microbial transglutaminase.


Subject(s)
Bacterial Proteins/chemistry , Calcium-Binding Proteins/isolation & purification , Cartilage/chemistry , Collagen Type II/isolation & purification , Intervertebral Disc/chemistry , Streptomyces/chemistry , Transferrin/chemistry , Transglutaminases/chemistry , Amino Acid Sequence , Animals , Binding Sites , Calcium-Binding Proteins/chemistry , Collagen Type II/chemistry , Molecular Sequence Data , Protein Binding , Streptomyces/enzymology , Substrate Specificity , Swine , Tissue Engineering , Tissue Scaffolds , Transferrin/isolation & purification
18.
J Microbiol Biotechnol ; 21(6): 617-26, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21715969

ABSTRACT

Transglutaminase from Streptomyces mobaraensis is an enzyme of unknown function that cross-links proteins to high molecular weight aggregates. Previously, we characterized two intrinsic transglutaminase substrates with inactivating activities against subtilisin and dispase. This report now describes a novel substrate that inhibits papain, bromelain, and trypsin. Papain was the most sensitive protease; thus, the protein was designated Streptomyces papain inhibitor (SPI). To avoid transglutaminase-mediated glutamine deamidation during culture, SPI was produced by Streptomyces mobaraensis at various growth temperatures. The best results were achieved by culturing for 30-50 h at 42 degrees C, which yielded high SPI concentrations and negligibly small amounts of mature transglutaminase. Transglutaminasespecific biotinylation displayed largely unmodified glutamine and lysine residues. In contrast, purified SPI from the 28 degrees C culture lost the potential to be cross-linked, but exhibited higher inhibitory activity as indicated by a significantly lower Ki (60 nM vs. 140 nM). Despite similarities in molecular mass (12 kDa) and high thermostability, SPI exhibits clear differences in comparison with all members of the wellknown family of Streptomyces subtilisin inhibitors. The neutral protein (pI of 7.3) shares sequence homology with a putative protein from Streptomyces lavendulae, whose conformation is most likely stabilized by two disulfide bridges. However, cysteine residues are not localized in the typical regions of subtilisin inhibitors. SPI and the formerly characterized dispase-inactivating substrate are unique proteins of distinct Streptomycetes such as Streptomyces mobaraensis. Along with the subtilisin inhibitory protein, they could play a crucial role in the defense of vulnerable protein layers that are solidified by transglutaminase.


Subject(s)
Cysteine Proteases/drug effects , Cysteine Proteinase Inhibitors/isolation & purification , Papain/antagonists & inhibitors , Streptomyces/metabolism , Transglutaminases/metabolism , Amino Acid Sequence , Animals , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Cysteine Proteases/chemistry , Cysteine Proteases/metabolism , Cysteine Proteinase Inhibitors/chemistry , Cysteine Proteinase Inhibitors/pharmacology , Molecular Sequence Data , Papain/chemistry , Papain/isolation & purification , Papain/metabolism , Sequence Homology , Streptomyces/classification , Streptomyces/enzymology , Streptomyces/growth & development , Substrate Specificity
19.
J Funct Biomater ; 2(3): 155-72, 2011 Aug 08.
Article in English | MEDLINE | ID: mdl-24956302

ABSTRACT

For back disorders, cell therapy is one approach for a real regeneration of a degenerated nucleus pulposus. Human mesenchymal stem cells (hMSC) could be differentiated into nucleus pulposus (NP)-like cells and used for cell therapy. Therefore it is necessary to find a suitable biocompatible matrix, which supports differentiation. It could be shown that a differentiation of hMSC in a microbial transglutaminase cross-linked gelatin matrix is possible, but resulted in a more chondrocyte-like cell type. The addition of porcine NP extract to the gelatin matrix caused a differentiation closer to the desired NP cell phenotype. This concludes that a hydrogel containing NP extract without any other supplements could be suitable for differentiation of hMSCs into NP cells. The NP extract itself can be cross-linked by transglutaminase to build a hydrogel free of NP atypical substrates. As shown by side-specific biotinylation, the NP extract contains molecules with free glutamine and lysine residues available for the transglutaminase.

20.
BMC Plant Biol ; 10: 227, 2010 Oct 22.
Article in English | MEDLINE | ID: mdl-20964874

ABSTRACT

BACKGROUND: Plant infestation with parasitic weeds like Cuscuta reflexa induces morphological as well as biochemical changes in the host and the parasite. These modifications could be caused by a change in protein or gene activity. Using a comparative macroarray approach Cuscuta genes specifically upregulated at the host attachment site were identified. RESULTS: One of the infestation specific Cuscuta genes encodes a cysteine protease. The protein and its intrinsic inhibitory peptide were heterologously expressed, purified and biochemically characterized. The haustoria specific enzyme was named cuscutain in accordance with similar proteins from other plants, e.g. papaya. The role of cuscutain and its inhibitor during the host parasite interaction was studied by external application of an inhibitor suspension, which induced a significant reduction of successful infection events. CONCLUSIONS: The study provides new information about molecular events during the parasitic plant--host interaction. Inhibition of cuscutain cysteine proteinase could provide means for antagonizing parasitic plants.


Subject(s)
Cuscuta/enzymology , Cysteine Proteases/metabolism , Plant Proteins/metabolism , Amino Acid Sequence , Biocatalysis , Blotting, Northern , Cuscuta/genetics , Cuscuta/physiology , Cysteine Proteases/genetics , Cysteine Proteinase Inhibitors/pharmacology , Electrophoresis, Polyacrylamide Gel , Kinetics , Molecular Sequence Data , Plant Proteins/antagonists & inhibitors , Plant Proteins/genetics , RNA, Plant/genetics , RNA, Plant/metabolism , Nicotiana/physiology
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