Thermo-osmosis of a near-critical binary fluid mixture: A general formulation and universal flow direction.

We consider a binary fluid mixture, which lies in the one-phase region near the demixing critical point, and study its transport through a capillary tube linking two large reservoirs. We assume that short-range interactions cause preferential adsorption of one component onto the tube's wall. The adsorption layer can become much thicker than the molecular size, which enables us to apply hydrodynamics based on a coarse-grained free-energy functional. For transport processes induced by gradients of the pressure, composition, and temperature along a cylindrical tube, we obtain the formulas of the Onsager coefficients to extend our previous results on isothermal transport, assuming the critical composition in the middle of each reservoir in the reference equilibrium state. Among the processes, we focus on thermo-osmosis-mass flow due to a temperature gradient. We explicitly derive a formula for the thermal force density, which is nonvanishing in the adsorption layer and causes thermo-osmosis. This formula for a near-critical binary fluid mixture is an extension of the conventional formula for a one-component fluid, expressed in terms of local excess enthalpy. We predict that the direction of thermo-osmotic flow of a mixture near the upper (lower) consolute point is the same as (opposite to) that of the temperature gradient, irrespective of which component is adsorbed on the wall. Our procedure would also be applied to dynamics of a soft material, whose mesoscopic inhomogeneity can be described by a coarse-grained free-energy functional.

Relaxation rate of the shape fluctuation of a fluid membrane immersed in a near-critical binary fluid mixture.

We consider the two-time correlation of the shape fluctuation of a fluid membrane immersed in a near-critical binary fluid mixture. Usually one component of the mixture is preferably attracted by the membrane. Adsorption layers, where the preferred component is more concentrated, are generated on both sides of the membrane significantly because of the near-criticality. The resultant gradient of the local mass-density difference between the two components generates additional stress, including the osmotic pressure, to influence the membrane motion. Assuming the mixture to be in the homogeneous phase near, but not too close to, the demixing critical point, we use the Gaussian free-energy functional to calculate the relaxation rate for a wavelength much longer than the correlation length of the mixture. Our calculation supposes weak preferential attraction and weak dependence of the mixture viscosity on the mass-density difference, and is performed within the linear approximation with respect to the undulation amplitude. It is shown for small wave number that the additional stress makes the relaxation more rapid independently of whether the preferred component is more viscous or not and that the relaxation rate can be regarded as proportional to the wave number even for a tensionless membrane. This linear dependence comes from the balance between the frictional force due to the mixture viscosity and the restoring force of the adsorption layer.

Undulation amplitude of a fluid membrane surrounded by near-critical binary fluid mixtures.

We consider the thermal undulation, or shape fluctuation, of an almost planar fluid membrane surrounded by the same near-critical binary fluid mixtures on both sides. A weak preferential attraction is assumed between the membrane and one component of the mixture. We use the Gaussian free-energy functional to study the equilibrium average of the undulation amplitude within the linear approximation with respect to the amplitude. According to our result given by a simple analytic formula, the ambient near-criticality tends to suppress the undulation of a membrane, and this suppression effect can overwhelm that of the bending rigidity for small wave numbers. Thus, the ambient near-criticality is suggested to prevent a large membrane from becoming floppy even if the lateral tension vanishes at the equilibrium.

Random-walk mechanism in the genetic recombination.

We have explained some experimental data of the homologous recombination and the genetic interference in terms of one-dimensional random walk over discrete sites. We first review our previous results. Next, we modify our random-walk model for the homologous recombination into a continuous-site model, and discuss a possible explanation for the previous experimental data obtained by means of the plasmid having one-side homology. Finally, we show that a reaction between an intermediate and a product is indispensable in explaining the genetic interference in terms of our reaction-diffusion model.

Asymmetric random walk in a reaction intermediate of homologous recombination.

At an intermediate step of the homologous recombination between two double-stranded DNA molecules, a point (often called Holliday structure) connecting two strands coming from two recombining partners migrates along the homologous region. Assuming random walk of a connecting point, we previously explained the dependence of recombination frequency on the homology length observed in vivo. In this model, the random walk was assumed to be symmetric in that the forward transition rate equals the backward one. According to observations in vitro, however, catalysed migration appears unidirectional. Taking into account possible asymmetry, we thus reformulate our random walk model to reexamine the observations in vivo. We also derive some theoretical results to analyse dynamic processes observed in vitro.

A reaction-diffusion model for interference in meiotic crossing over.

One crossover point between a pair of homologous chromosomes in meiosis appears to interfere with occurrence of another in the neighborhood. It has been revealed that Drosophila and Neurospora, in spite of their large difference in the frequency of crossover points, show very similar plots of coincidence-a measure of the interference-against the genetic distance of the interval, defined as one-half the average number of crossover points within the interval. We here propose a simple reaction-diffusion model, where a "randomly walking" precursor becomes immobilized and matures into a crossover point. The interference is caused by pair-annihilation of the random walkers due to their collision and by annihilation of a random walker due to its collision with an immobilized point. This model has two parameters-the initial density of the random walkers and the rate of its processing into a crossover point. We show numerically that, as the former increases and/or the latter decreases, plotted curves of the coincidence vs. the genetic distance converge on a unique curve. Thus, our model explains the similarity between Drosophila and Neurospora without parameter values adjusted finely, although it is not a "genetic model" but is a "physical model," specifying explicitly what happens physically.