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1.
Viruses ; 16(5)2024 05 09.
Article in English | MEDLINE | ID: mdl-38793631

ABSTRACT

Viral co-infections are frequently observed among children, but whether specific viral interactions enhance or diminish the severity of respiratory disease is still controversial. This study aimed to investigate the type of viral mono- and co-infections by also evaluating viral correlations in 3525 respiratory samples from 3525 pediatric in/outpatients screened by the Allplex Respiratory Panel Assays and with a Severe Acute Respiratory Syndrome-COronaVirus 2 (SARS-CoV-2) test available. Overall, viral co-infections were detected in 37.8% of patients and were more frequently observed in specimens from children with lower respiratory tract infections compared to those with upper respiratory tract infections (47.1% vs. 36.0%, p = 0.003). SARS-CoV-2 and influenza A were more commonly detected in mono-infections, whereas human bocavirus showed the highest co-infection rate (87.8% in co-infection). After analyzing viral pairings using Spearman's correlation test, it was noted that SARS-CoV-2 was negatively associated with all other respiratory viruses, whereas a markedly significant positive correlation (p < 0.001) was observed for five viral pairings (involving adenovirus/human bocavirus/human enterovirus/metapneumoviruses/rhinovirus). The correlation between co-infection and clinical outcome may be linked to the type of virus(es) involved in the co-infection rather than simple co-presence. Further studies dedicated to this important point are needed, since it has obvious implications from a diagnostic and clinical point of view.


Subject(s)
COVID-19 , Coinfection , Hospitals, Pediatric , Respiratory Tract Infections , SARS-CoV-2 , Tertiary Care Centers , Humans , Coinfection/epidemiology , Coinfection/virology , Respiratory Tract Infections/virology , Respiratory Tract Infections/epidemiology , Italy/epidemiology , Child, Preschool , Child , Infant , Female , Male , Tertiary Care Centers/statistics & numerical data , COVID-19/epidemiology , COVID-19/virology , SARS-CoV-2/isolation & purification , Adolescent , Human bocavirus/isolation & purification , Human bocavirus/genetics , Virus Diseases/epidemiology , Virus Diseases/virology , Hospitalization , Viruses/isolation & purification , Viruses/classification , Viruses/genetics , Infant, Newborn , Metapneumovirus/isolation & purification , Metapneumovirus/genetics
2.
Ital J Pediatr ; 49(1): 121, 2023 Sep 13.
Article in English | MEDLINE | ID: mdl-37705032

ABSTRACT

BACKGROUND: Influenza surveillance aims to determine onset, duration and intensity of the seasonal Influence-like Illness (ILI); data collection begins in the week 42 of a year and ends in the week 17 of the following year. In this observational study, we report the experience of a tertiary care children hospital in Rome about Influenza viruses circulation during the calendar year 2022 (January-December) in comparison with the previous five years (2017-2021), with a special focus on the weeks 18-41, usually not under surveillance. METHODS: This retrospective study involved 36782 respiratory samples referred to 21354 patients (pts), median age 2.63 years, admitted with respiratory symptoms at Bambino Gesù Children's Hospital in the years 2017-2022. Respiratory viruses were detected by molecular Allplex™ Respiratory Panel Assays (Seegene, Korea). RESULTS: Regarding the pre pandemic years, 2017-2019, distribution of Flu positive patients focused in the first weeks of the year (weeks 1-17). During the pandemic period, Flu was not detected. In 2022, 239 Flu viruses were identified: 37 FluA (weeks 1-17), 29 FluA (weeks 18-41) and 168 FluA and 5 FluB (weeks 42-52). For the year 2022, during the non-epidemic period, the number of Flu viruses detected corresponded to 12.1% of total Flu detected, respect to 0-1.7% for the previous five years (p < 0.001). CONCLUSIONS: When compared with pre SARS-CoV-2 pandemic years, our data show a significant increase in Influenza cases during weeks 18-41/2022 and reveal an unexpected summer circulation of these viruses: just weeks 26-30 showed to be influenza virus free. A national year-round Flu surveillance could be useful to understand if changing in influenza epidemiology is transitional or likely to persist in the following years.


Subject(s)
COVID-19 , Influenza, Human , Orthomyxoviridae , Humans , Child , Child, Preschool , Influenza, Human/epidemiology , Retrospective Studies , Rome/epidemiology , Tertiary Healthcare , SARS-CoV-2 , Hospitals, Pediatric
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