Emergent properties of free-living nematode assemblages exposed to multiple stresses.

Biological communities are currently facing multi-stressor scenarios whose ecological impacts are challenging to estimate. In that respect, considering the complex nature of ecosystems and types and interaction among stressors is mandatory. Microcosm approaches using free-living nematode assemblages can effectively be used to assess complexity since they preserve the interactions inherent to complex systems when testing for multiple stress effects. In this study, we investigated the interaction effects of three stress factors, namely i-metallic mixture of Cu, Pb, Zn, and Hg (control [L0], low, [L1] and high [L2]), ii- CO2-driven acidification (pH 7.6 and 8.0), and iii- temperature rise (26 and 28 °C), on estuarine free-living nematode assemblages. Metal contamination had the greatest influence on free-living nematode assemblages, irrespective of pH and temperature scenarios. Interestingly, whilst the most abundant free-living nematode genera showed significant decreases in their densities when exposed to contamination, other, less abundant, genera were apparently favored and showed significantly higher densities in contaminated treatments. The augmented densities of tolerant genera may be attributed to indirect effects resulting from the impacts of toxicity on other components of the system, indicating the potential for emergent effects in response to stress. Temperature and pH interacted significantly with contamination. Whilst temperature rise had potentialized contamination effects, acidification showed the opposite trend, acting as a buffer to the effects of contamination. Such results show that temperature rise and CO2-driven acidification interact with contamination on coastal waters, highlighting the importance of considering the intricate interplay of these co-occurring stressors when assessing the ecological impacts on coastal ecosystems.

Machine learning algorithms accurately identify free-living marine nematode species.

Background: Identifying species, particularly small metazoans, remains a daunting challenge and the phylum Nematoda is no exception. Typically, nematode species are differentiated based on morphometry and the presence or absence of certain characters. However, recent advances in artificial intelligence, particularly machine learning (ML) algorithms, offer promising solutions for automating species identification, mostly in taxonomically complex groups. By training ML models with extensive datasets of accurately identified specimens, the models can learn to recognize patterns in nematodes' morphological and morphometric features. This enables them to make precise identifications of newly encountered individuals. Implementing ML algorithms can improve the speed and accuracy of species identification and allow researchers to efficiently process vast amounts of data. Furthermore, it empowers non-taxonomists to make reliable identifications. The objective of this study is to evaluate the performance of ML algorithms in identifying species of free-living marine nematodes, focusing on two well-known genera: Acantholaimus Allgén, 1933 and Sabatieria Rouville, 1903. Methods: A total of 40 species of Acantholaimus and 60 species of Sabatieria were considered. The measurements and identifications were obtained from the original publications of species for both genera, this compilation included information regarding the presence or absence of specific characters, as well as morphometric data. To assess the performance of the species identification four ML algorithms were employed: Random Forest (RF), Stochastic Gradient Boosting (SGBoost), Support Vector Machine (SVM) with both linear and radial kernels, and K-nearest neighbor (KNN) algorithms. Results: For both genera, the random forest (RF) algorithm demonstrated the highest accuracy in correctly classifying specimens into their respective species, achieving an accuracy rate of 93% for Acantholaimus and 100% for Sabatieria, only a single individual from Acantholaimus of the test data was misclassified. Conclusion: These results highlight the overall effectiveness of ML algorithms in species identification. Moreover, it demonstrates that the identification of marine nematodes can be automated, optimizing biodiversity and ecological studies, as well as turning species identification more accessible, efficient, and scalable. Ultimately it will contribute to our understanding and conservation of biodiversity.

Ocean warming and CO2-driven acidification can alter the toxicity of metal-contaminated sediments to the meiofauna community.

Interactive effects of trace metal contamination, ocean warming, and CO2-driven acidification on the structure of a meiofaunal benthic community was assessed. Meiofauna microcosm bioassays were carried out in controlled conditions in a full factorial experimental design which included three fixed factors: metal contamination in the sediment (3 levels of a mixture of Cu, Pb, Zn, and Hg), temperature (26 and 28 °C) and pH (7.6 and 8.1). Metal contamination caused a sharp decrease in the densities of the most abundant meiobenthic groups and interacted with temperature rise, exacerbating deleterious effects for Nematoda and Copepoda, but mitigating effects for Acoelomorpha. CO2-driven acidification resulted in increased acoelomorphs density, but only in sediments with lower levels of metals. Copepod densities, in turn, were lower in the CO2-driven acidification scenario regardless of contamination or temperature. The results obtained in the present study showed that temperature rise and CO2-driven acidification of coastal ocean waters, at environmentally relevant levels, interacts with trace metals in marine sediments, differently affecting the major groups of benthic biota.

Does pH variation influence the toxicity of organic contaminants in estuarine sediments? Effects of Irgarol on nematode assemblages.

Natural pH values in coastal waters vary largely among locations, ecosystems, and time periods; still, there is an ongoing acidification trend. In this scenario, more acidic pH values can alter bioavailability of organic contaminants, to organisms. Despite this, interactive effects between pH and chemical substances are not usually considered in Ecological Risk Assessment protocols. This study investigated the effects of pH on the toxicity of a hydrophobic organic compound on a benthic community using a microcosm experiment setup to assess the response of nematode assemblages exposed to environmentally relevant concentrations of Irgarol at two natural pH conditions. Estuarine nematode assemblages were exposed to two concentrations of Irgarol at pH 7.0 and 8.0 for periods of 7 and 35 days. Lower diversity of nematode genera was observed at the highest tested Irgarol concentration (1281 ± 65 ng.g-1). The results showed that the effects of Irgarol contamination were independent of pH variation, indicating no influence of acidification within this range on the toxicity of Irgarol to benthic meiofauna. However, the results showed that estuarine nematode assemblages are impacted by long-term exposure to low (but naturally occurring) pHs. This indicates that estuarine organisms may be under naturally high physiological pressure and that permanent changes in the ecosystem's environmental factors, such as future coastal ocean acidification, may drive organisms closer to the edges of their tolerance windows.

The relative contribution of non-selection and selection processes in marine benthic assemblages.

We tested the hypothesis that the ubiquity of marine meiofaunal nematodes and their indiscriminate passive dispersal create assemblages that are less limited by its environment; whereas the relatively smaller population sizes of macrofauna, associated with their ability to track environmental conditions before settlement, renders their distribution more environmentally-restricted. We compared the empirical distribution of macrofauna and nematode species with that of communities simulated under different assumptions of selection (e.g. environmental filtering) and non-selection (e.g. dispersal limitation) processes. Selection processes were the prime driver of both meio- and macrofauna assemblages, with rare species strongly contributing to this component. The total number of species explained by non-selection processes was 27% higher in nematodes than in macrofauna. Our results underline the importance of a species-level approach to determine the contribution of selection and non-selection assembly processes. Moreover, they highlight the important yet overlooked role of dispersal and stochastic processes in determining species dynamics.

Response of life-history traits of estuarine nematodes to the surfactant sodium dodecyl sulfate.

Species responses to stress are expected to be dependent on their life-history strategy. In this study, we compare the responses of two free-living marine nematodes, Litoditis marina and Diplolaimella dievengatensis, both considered opportunistic, fast-growing, and stress-tolerant species, to the exposure to sublethal concentrations of sodium dodecyl sulfate (SDS) surfactant. Specifically, we evaluated the growth and reproduction rates, as well as the survival of individuals exposed from eggs and/or juveniles (J1) onwards. Exposure to SDS significantly affected the growth and reproduction rates of both species. However, whereas growth and reproduction rates of D. dievengatensis were significantly enhanced at low and intermediate concentrations of SDS (0.001% and 0.003%), for L. marina both parameters were significantly reduced by all SDS concentrations tested (0.001%, 0.003% and 0.006%). Exposure to SDS did not affect the survival of adult nematodes of D. dievengatensis, while for L. marina, survival of males exposed to 0.006% SDS was significantly reduced compared to the control. Responses of the life-history traits growth, fecundity and survival did not exhibit clear trade-offs. The contrasting responses of D. dievengatensis and L. marina indicate that biologically and ecologically similar species can have remarkably distinct tolerances to stress, and that, in agreement with recent studies, rhabditid nematodes cannot a priori be considered very stress tolerant. Consequently, single species traits and phylogenetic relatedness are poor predictors of nematode responses to toxic stress posed by anthropogenic activities.

Influence of sediment organic carbon on toxicity depends on organism's trophic ecology.

Studies which showed the influence of organic carbon on the toxicity of sediment-associated contaminants on benthic invertebrates suggest this was primarily due to its influence on the interstitial water concentrations of the contaminant. A higher organic content offers more binding sites for organic contaminants, which means lower toxicity for organisms whose exposure route is mainly through contaminated interstitial water. However, a higher organic content in the sediment could mean a higher toxicity for deposit-feeding organisms, which can assimilate the contaminant by ingestion of contaminated particles. To investigate the influence of sedimentary organic carbon content on the toxicity of an organic contaminant on a benthic community, a microcosm experiment was carried out where natural nematode assemblages were exposed to three concentrations of Irgarol in sediments with two different levels of organic carbon for 7 and 35 days. The response of the nematode assemblage to sediment contamination by Irgarol differed between organically "Lower organic carbon" and "Higher organic carbon" sediments. Responses were genus specific and although community composition was the same in both sediments in the beginning of the assay, contamination by Irgarol affected different genera at each sediment type. Also, the differential amount of organic carbon promoted responses of different functional groups. In Lower organic carbon sediments, contaminated treatments showed lower abundances of the genus Viscosia and the group of predacious nematodes, which were probably affected by an increased availability of Irgarol in the interstitial water in this treatment. In Higher organic carbon sediments, the group of deposit-feeders were mainly affected, suggesting the ingestion of contaminated food as the main route of contamination in this condition. These results indicate that the bioavailability of toxic substances in sediments is not only determined by their partitioning between the different phases of the sediment but also by the organism's trophic ecology.

Effects of an experimental oil spill on the structure and function of benthic assemblages with different history of exposure to oil perturbation.

The present study compared the short-term effects of a diesel oil spill on the strucure and function of nematode and macrobenthic assemblages between tidal flats with different history of exposure to oil perturbation. A manipulative field experiment was conducted, where oil exposed treatments were contrasted with controls, during four successive times, two before and two after the oil spills. During the oil spill the death and the presence of diverse debilitated macrofaunal organisms were observed in the oil treatments. However, 24 h later no significant changes were identified, suggesting that the impacted plots were quickly recolonized. Nematode assemblages showed a decrease in overall density and an increase of r-strategist traits such as non-selective deposit feeders and colonizers at perturbed treatments from one of the historically non-perturbed tidal flats. We discuss the mechanisms responsible by distinctive patterns of response observed between the two benthic components.

Is the microcosm approach using meiofauna community descriptors a suitable tool for ecotoxicological studies?

The usual approaches used in ecological risk assessment have been based on individual and population level standard procedures. Although these have been important tools to assess adverse effects on ecosystems, they are generally simplified and therefore lack ecological realism. Microcosm studies using meiobenthic communities offer a good compromise between the complexity of the ecosystem and the often highly artificial settings of laboratory experiments. An experiment was designed to investigate the potential of the microcosm approach using meiofauna as a tool for ecotoxicological studies. The experiment tested the ecological effects of exposure to sewage-impacted pore water simultaneously at the community level using meiofauna microcosms and at the individual level using laboratory fecundity tests with the copepod Nitokra sp. Specifically, the experiment tested the toxicity of pore water from three sites according to a contamination gradient. Both approaches were efficient in detecting differences in toxicity between the less and more contaminated sites. However, only multivariate data from community analysis detected differences in the gradient of contamination. In addition to information about toxicity, the community level microcosm experiment gave indications about sensitive and tolerant species, indirect ecological effects, as well as raised hypothesis about contamination routes and bioavailability to be tested. Considering the importance of meiofauna for benthic ecosystems, the microcosm approach using natural meiobenthic communities might be a valuable addition as a higher tier approach in ecological risk assessment, providing highly relevant ecological information on the toxicity of contaminated sediments.

Effects of drill cuttings discharge on meiofauna communities of a shelf break site in the southwest Atlantic.

The present study investigates the effects of drill cutting discharges on the structure of meiofauna communities in an area of the shelf break at Campos Basin, Southeast Brazil. Drilling activities were operated, in a first phase, with water-based fluid and, in a second phase, with synthetic fluid paraffin-based (NAF-III). A total of 135 samples taken at a pre-drilling situation (MS1) and two post-drilling moments (MS2 and MS3-3 and 22 months post-drilling, respectively) were analyzed. Effects on meiofauna were dependent on two main factors: 1-the impact received during drilling operation, if water-based or synthetic/water-based drilling fluid and 2-the background state, if it already presented signs of previous drilling activities or not. Based on univariate and multivariate analysis, there were evidences that the most affected area after drilling was those under the influence of synthetic-based fluid and that already had signs of previous drillings activities. The region impacted only by water-based fluid was less affected and the only one that completely recovered after 22 months. Nematodes and copepods had different responses to the impact. While copepods flourish in the impacted area and recovered 22 months after drilling, nematodes were adversely affected shortly after drilling and the community structure only recovered where hydrocarbons had been depleted.