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1.
Front Plant Sci ; 15: 1371252, 2024.
Article in English | MEDLINE | ID: mdl-38711601

ABSTRACT

Stem diameter is a critical phenotypic parameter for maize, integral to yield prediction and lodging resistance assessment. Traditionally, the quantification of this parameter through manual measurement has been the norm, notwithstanding its tedious and laborious nature. To address these challenges, this study introduces a non-invasive field-based system utilizing depth information from RGB-D cameras to measure maize stem diameter. This technology offers a practical solution for conducting rapid and non-destructive phenotyping. Firstly, RGB images, depth images, and 3D point clouds of maize stems were captured using an RGB-D camera, and precise alignment between the RGB and depth images was achieved. Subsequently, the contours of maize stems were delineated using 2D image processing techniques, followed by the extraction of the stem's skeletal structure employing a thinning-based skeletonization algorithm. Furthermore, within the areas of interest on the maize stems, horizontal lines were constructed using points on the skeletal structure, resulting in 2D pixel coordinates at the intersections of these horizontal lines with the maize stem contours. Subsequently, a back-projection transformation from 2D pixel coordinates to 3D world coordinates was achieved by combining the depth data with the camera's intrinsic parameters. The 3D world coordinates were then precisely mapped onto the 3D point cloud using rigid transformation techniques. Finally, the maize stem diameter was sensed and determined by calculating the Euclidean distance between pairs of 3D world coordinate points. The method demonstrated a Mean Absolute Percentage Error (MAPE) of 3.01%, a Mean Absolute Error (MAE) of 0.75 mm, a Root Mean Square Error (RMSE) of 1.07 mm, and a coefficient of determination (R²) of 0.96, ensuring accurate measurement of maize stem diameter. This research not only provides a new method of precise and efficient crop phenotypic analysis but also offers theoretical knowledge for the advancement of precision agriculture.

2.
Micromachines (Basel) ; 12(6)2021 May 27.
Article in English | MEDLINE | ID: mdl-34072266

ABSTRACT

Network-on-Chips with simple topologies are widely used due to their scalability and high bandwidth. The transmission latency increases greatly with the number of on-chip nodes. A NoC, called single-cycle multi-hop asynchronous repeated traversal (SMART), is proposed to solve the problem by bypassing intermediate routers. However, the bypass setup request of SMART requires additional pipeline stages and wires. In this paper, we present a NoC with rapid bypass channels that integrates the bypass information into each flit. In the proposed NoC, all the bypass requests are delivered along with flits at the same time reducing the transmission latency. Besides, the bypass request is unicasted in our design instead of broadcasting in SMART leading to a great reduction in wire overhead. We evaluate the NoC in four synthetic traffic patterns. The result shows that the latency of our proposed NoC is 63.54% less than the 1-cycle NoC. Compared to SMART, more than 80% wire overhead and 27% latency are reduced.

3.
Micromachines (Basel) ; 12(3)2021 Mar 10.
Article in English | MEDLINE | ID: mdl-33802187

ABSTRACT

Embedded processors are widely used in various systems working on different tasks with different workloads. A more complex micro-architecture leads to better peak performance and worse power consumption. Shutting down the units designed for performance enhancement could improve energy efficiency in low-workload scenarios. In this paper, we evaluated the energy distribution in various embedded processors. According to the analysis, pipeline registers and the dynamic branch predictor, which are employed for better peak performance, have great impacts on energy efficiency. Thus, we proposed an ultra-low-power processor with variable micro-architecture. The processor is based on a 4-stage pipeline core with a Gshare branch predictor, and all units work in high-performance mode. In normal mode, the Gshare predictor is shut down and Always-Not-Taken prediction is used. In low-power mode, some of the pipeline registers are bypassed to avoid unnecessary energy dissipation and improve executing efficiency. A mode register (MR) is designed to indicate current working mode. Switching between different modes is controlled by the software. The proposed core is implemented in 40 nm technology and simulated with the traces of 17 benchmarks in Embench. The average amounts of power consumed by the respective modes are 41.7 µW, 59.7 µW and 71.1 µW. The results show that normal mode (N-mode) and low-power mode (L-mode) consume 16.08% and 41.37% less power than high-performance mode (H-mode) on average. In best case scenarios, they could save 25.36% and 49.30% more power than H-mode. Considering the execution efficiency evaluated by instructions per cycle (IPC), the proposed processor consumes 7.78% or 51.57% less energy for each instruction than the baseline core. The area of the proposed processor is only 7.19% larger than the baseline core, and only 3.08% more power is consumed in H-mode.

4.
Immunopharmacol Immunotoxicol ; 42(5): 445-455, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32787473

ABSTRACT

CONTEXT: Acute liver failure is a serious disease caused by a variety of factors, and immunological injury is an important pathological process. Comprehensive liver treatment efficacy is poor, and the mortality rate is high. Magnesium isoglycyrrhizinate (MgIG) is a new glycyrrhizin drug extracted from the traditional Chinese medicine licorice. The mechanism by which MgIG regulates ConcanavalinA (ConA)-induced immunological liver injury in mice is not completely clear. MATERIALS AND METHODS: Immunological liver injury was induced in mice by ConA injection, and the inflammatory macrophages model was induced by lipopolysaccharide (LPS). MgIG was administered 30 min prior to ConA and LPS treatment. The mice in the different groups were sacrificed 12 h after treatment, and macrophages were measured at 30 min, 1 h, and 2 h after induction. Macrophages, liver, and blood samples were then collected for analysis. RESULTS: After drug administration, the MgIG group showed a marked decrease in serum transaminase levels, reduced apoptosis and hepatic inflammatory responses compared to the ConA group. Furthermore, there was a significant reduction in inflammatory cytokine levels in the serum and liver tissue. In vitro, the expression of inflammatory cytokines was distinctly reduced after MgIG administration. In addition, MgIG pretreatment reduced the expression of inflammatory cytokines and regulated the phosphorylation of p38 and JNK proteins in the MAPK pathway. CONCLUSION: These findings demonstrated that MgIG protects against ConA-induced immunological liver injury by markedly alleviating liver inflammation, and this provides guidance for the clinical amelioration of liver inflammation induced by immunological factors.


Subject(s)
Chemical and Drug Induced Liver Injury/prevention & control , JNK Mitogen-Activated Protein Kinases/metabolism , Liver/drug effects , Saponins/pharmacology , Triterpenes/pharmacology , p38 Mitogen-Activated Protein Kinases/metabolism , Animals , Apoptosis/drug effects , Cells, Cultured , Chemical and Drug Induced Liver Injury/enzymology , Chemical and Drug Induced Liver Injury/etiology , Chemical and Drug Induced Liver Injury/pathology , Concanavalin A , Cytokines/metabolism , Disease Models, Animal , Liver/enzymology , Liver/pathology , Macrophages/drug effects , Macrophages/enzymology , Male , Mice, Inbred BALB C , Phosphorylation , Signal Transduction
5.
Lab Chip ; 7(11): 1574-80, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17960288

ABSTRACT

A novel miniaturized, integrated whole-column imaging detection (WCID) system on a microchip is presented. In this system, a program controlled organic light emitting diode (OLED) array was used as a spatial-scanning light source, to achieve imaging by the time sequence of the excited fluorescence. By this mechanism, a photomultiplier tube (PMT) instead of a charge coupled detector (CCD) can be applied to the imaging. Unlike conventional systems, no lenses, fibers or any mechanical components are required either. The novel flat light source provides uniform excitation light without size limitations and outputs a stronger power by pulse driving. The scanning mode greatly reduced the power consumption of the light source, which is valuable for a portable system. Meanwhile, this novel simplified system has a broader linear range, higher sensitivity and higher efficiency in data collection. Isoelectric focusing of R-phycoerythrin (PE) and monitoring of the overall process with WCID were performed on this system. The limit of detection (LOD) was 38 ng mL(-1) or 3.2 pg at 85 nL per column injection of PE. The system provides a technique for WCID capillary isoelectric focusing (cIEF) on chip and can be used for throughput analysis.


Subject(s)
Light , Spectrometry, Fluorescence/methods , Isoelectric Focusing , Miniaturization , Photochemistry , Proteins/chemistry , Sensitivity and Specificity , Spectrometry, Fluorescence/instrumentation
6.
Anal Chem ; 78(16): 5845-50, 2006 Aug 15.
Article in English | MEDLINE | ID: mdl-16906731

ABSTRACT

An integrated and simplified microfluidic device using a 250 microm x 1-4 cm of organic light emitting diode (OLED) array as a two-dimensional light source for single-channel and multichannel whole-column imaging detection was developed. This fluorescence detection system was used for isoelectric focusing (IEF) of R-phycoerythrin in a microchip. The IEF conditions were optimized, and the total analysis time was extremely reduced to 30 s for 2-cm-long microchannels at 700 V/cm of electric field strength without the presence of electroosmotic flow. The compression of pH gradient caused by electrolytes drawing into the microchannels was efficiently restrained when 1% hydroxylpropylmethyl cellulose in 2% ampholyte was used as the carrier for IEF. Under optimized IEF conditions, the detection limit of this system was approximately 0.6 microg/mL or 45 pg at 75 nL/column injection of R-phycoerythrin. This OLED-induced fluorescence detection system for WCID provides a high-speed IEF technique with quantitative ability and the potential for high integration and throughput microchip systems.


Subject(s)
Isoelectric Focusing/methods , Microfluidic Analytical Techniques/methods , Fluorescence , Light , Phycoerythrin/analysis
7.
Lab Chip ; 5(10): 1041-7, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16175258

ABSTRACT

A simply fabricated microfluidic device using a green organic light emitting diode (OLED) and thin film interference filter as integrated excitation source is presented and applied to fluorescence detection of proteins. A layer-by-layer compact system consisting of glass/PDMS microchip, pinhole, excitation filter and OLED is designed and equipped with a coaxial optical fiber and for fluorescence detection a 300 microm thick excitation filter is employed for eliminating nearly 80% of the unwanted light emitted by OLEDs which has overlaped with the fluorescence spectrum of the dyes. The distance between OLED illuminant and microchannels is limited to approximately 1 mm for sensitive detection. The achieved fluorescence signal of 300 microM Rhodamine 6G is about 13 times as high as that without the excitation filter and 3.5 times the result of a perpendicular detection structure. This system has been used for fluorescence detection of Rhodamine 6G, Alexa 532 and BSA conjugates in 4% linear polyacrymide (LPA) buffer (in 1 x TBE, pH 8.3) and 1.4 fmol and 35 fmol mass detection limits at 0.7 nl injection volume for Alexa and Rhodamine dye have been obtained, respectively.


Subject(s)
Microchip Analytical Procedures/methods , Microfluidic Analytical Techniques/methods , Acrylic Resins/chemistry , Dimethylpolysiloxanes/chemistry , Dose-Response Relationship, Drug , Electrophoresis, Capillary , Electrophoresis, Microchip/methods , Fluorescent Dyes/pharmacology , Glass , Light , Microfluidic Analytical Techniques/instrumentation , Microscopy, Fluorescence , Rhodamines/pharmacology , Serum Albumin/metabolism , Silver , Time Factors
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