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1.
ACS Chem Neurosci ; 15(6): 1265-1275, 2024 03 20.
Article in English | MEDLINE | ID: mdl-38421952

ABSTRACT

Alzheimer's disease (AD) is associated with the aggregation of amyloid ß (Aß) and tau proteins. Why ApoE variants are significant genetic risk factors remains a major unsolved puzzle in understanding AD, although intracellular interactions with ApoE are suspected to play a role. Here, we show that specific changes in the fluorescence lifetime of fluorescently tagged small Aß oligomers in rat brain cells correlate with the cellular ApoE content. An inhibitor of the Aß-ApoE interaction suppresses these changes and concomitantly reduces Aß toxicity in a dose-dependent manner. Single-molecule techniques show changes both in the conformation and in the stoichiometry of the oligomers. Neural stem cells derived from hiPSCs of Alzheimer's patients also exhibit these fluorescence lifetime changes. We infer that intracellular interaction with ApoE modifies the N-terminus of the Aß oligomers, inducing changes in their stoichiometry, membrane affinity, and toxicity. These changes can be directly imaged in live cells and can potentially be used as a rapid and quantitative cellular assay for AD drug discovery.


Subject(s)
Alzheimer Disease , Amyloid beta-Peptides , Humans , Rats , Animals , Amyloid beta-Peptides/metabolism , Apolipoproteins E/genetics , Apolipoproteins E/metabolism , Alzheimer Disease/metabolism , Brain/metabolism , tau Proteins/metabolism
2.
J Am Chem Soc ; 143(40): 16621-16629, 2021 10 13.
Article in English | MEDLINE | ID: mdl-34582216

ABSTRACT

The formation of amyloid fibrils and oligomers is a hallmark of several neurodegenerative disorders, including Alzheimer's disease (AD), and contributes to the disease pathway. To progress our understanding of these diseases at a molecular level, it is crucial to determine the mechanisms and rates of amyloid formation and replication. In the context of AD, the self-replication of aggregates of the Aß42 peptide by secondary nucleation, leading to the formation of new aggregates on the surfaces of existing ones, is a major source of both new fibrils and smaller toxic oligomeric species. However, the core mechanistic determinants, including the presence of intermediates, as well as the role of heterogeneities in the fibril population, are challenging to determine from bulk aggregation measurements. Here, we obtain such information by monitoring directly the time evolution of individual fibrils by TIRF microscopy. Crucially, essentially all aggregates have the ability to self-replicate via secondary nucleation, and the amplification of the aggregate concentration cannot be explained by a small fraction of "superspreader" fibrils. We observe that secondary nucleation is a catalytic multistep process involving the attachment of soluble species to the fibril surface, followed by conversion/detachment to yield a new fibril in solution. Furthermore, we find that fibrils formed by secondary nucleation resemble the parent fibril population. This detailed level of mechanistic insights into aggregate self-replication is key in the rational design of potential inhibitors of this process.


Subject(s)
Amyloid
3.
Biophys J ; 120(3): 476-488, 2021 02 02.
Article in English | MEDLINE | ID: mdl-33417920

ABSTRACT

Molecular chaperone Hsp70 plays important roles in the pathology of amyloid diseases by inhibiting aberrant aggregation of proteins. However, the biophysical mechanism of the interaction of Hsp70 with the intrinsically disordered proteins (IDPs) is unclear. Here, we report that Hsp70 inhibits aggregation of islet amyloid polypeptide (IAPP) at substoichiometric concentrations under diverse solution conditions, including in the absence of ATP. The inhibitory effect is strongest if Hsp70 is added in the beginning of aggregation but progressively less if added later, indicating a role for Hsp70 in preventing nucleation of IAPP. However, ensemble measurement of the binding affinity suggests poor interactions between Hsp70 and IAPP. Therefore, we hypothesize that the interaction must involve a rare species (e.g., the oligomeric intermediates of IAPP). Size exclusion chromatography and field flow fractionation are then used to fractionate the constituent species. Multiangle light scattering and fluorescence correlation spectroscopy measurements indicate that the dominant fraction in size exclusion chromatography contains a few nanomolar Hsp70-IAPP complexes amid several µmoles of free Hsp70. Using single-particle two-color coincidence detection measurements, we detected a minor fraction that exhibits fluorescence bursts arising from heterogeneous oligomeric complexes of IAPP and Hsp70. Taken together, our results indicate that Hsp70 interacts poorly with the monomers but strongly with oligomers of IAPP. This is likely a generic feature of the interactions of Hsp70 chaperones with the amyloidogenic IDPs. Whereas high-affinity interactions with the oligomers prevent aberrant aggregation, poor interaction with the monomers averts interference with the physiological functions of the IDPs.


Subject(s)
HSP70 Heat-Shock Proteins , Islet Amyloid Polypeptide , Amyloid
4.
Biochim Biophys Acta Proteins Proteom ; 1868(12): 140535, 2020 12.
Article in English | MEDLINE | ID: mdl-32882410

ABSTRACT

ApoE4(C112R) is the strongest risk factor for Alzheimer's disease, while apoE3(C112) is considered normal. The C112R substitution is believed to alter the interactions between the N-terminal (NTD) and the C-terminal domain (CTD) leading to major functional differences. Here we investigate how the molecular property of the residue at position 112 affects domain interaction using an array of C112X substitutions with arginine, alanine, threonine, valine, leucine and isoleucine as 'X'. We attempt to determine the free energy of domain interaction (∆GINT) from stabilities of the NTD (∆GNTD) and CTD (∆GCTD) in the full-length apoE, and the stabilities of fragments of the NTD (∆GNTF) and CTD (∆GCTF), using the relationship, ∆GINT = ∆GNTD + ∆GCTD - ∆GNTF - ∆GCTF. We find that although ∆GNTD is strongly dependent on the C112X substitutions, ∆GNTD - ∆GNTF is small. Furthermore, ∆GCTD remains nearly the same as ∆GCTF. Therefore, ∆GINT is estimated to be small and similar for the apoE isoforms. However, stability of domain interaction monitored by urea dependent changes in interdomain Forster Resonance Energy Transfer (FRET) is found to be strongly dependent on C112X substitutions. ApoE4 exhibits the highest mid-point of denaturation of interdomain FRET. To resolve the apparently contradictory observations, we hypothesize that higher interdomain FRET in apoE4 in urea may involve 'intermediate' states. Enhanced fluorescence of bis-ANS and susceptibility to proteolytic cleavage support that apoE4, specifically, the NTD of apoE4 harbor 'intermediates' in both native and mildly denaturing conditions. The intermediates could hold key to the pathological functions of apoE4.


Subject(s)
Apolipoprotein E4/chemistry , Protein Interaction Domains and Motifs , Apolipoprotein E3/chemistry , Apolipoprotein E4/genetics , Apolipoprotein E4/metabolism , Humans , Kinetics , Models, Molecular , Mutation , Protein Binding , Protein Isoforms , Protein Stability , Protein Unfolding , Structure-Activity Relationship
5.
Biochem Biophys Rep ; 23: 100774, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32617419

ABSTRACT

Podocytes are crucial cells of the glomerular filtration unit and plays a vital role at the interface of the blood-urine barrier. Podocyte slit-diaphragm is a modified tight junction that facilitates size and charge-dependent permselectivity. Several proteins including podocin, nephrin, CD2AP, and TRPC6 form a macromolecular assembly and constitute the slit-diaphragm. Podocin is an integral membrane protein attached to the inner membrane of the podocyte via a short transmembrane region (101-125). The cytosolic N- and C-terminus help podocin to attain a hook-like structure. Podocin shares 44% homology with stomatin family proteins and similar to the stomatin proteins, podocin was shown to associate into higher-order oligomers at the site of slit-diaphragm. However, the stoichiometry of the homo-oligomers and how it partakes in the macromolecular assemblies with other slit-diaphragm proteins remains elusive. Here we investigated the oligomeric propensity of a truncated podocin construct (residues:126-350). We show that the podocin domain majorly homo-oligomerizes into a 16-mer. Circular dichroism and fluorescence spectroscopy suggest that the 16-mer oligomer has considerable secondary structure and moderate tertiary packing.

6.
FEBS J ; 286(23): 4737-4753, 2019 12.
Article in English | MEDLINE | ID: mdl-31287614

ABSTRACT

Although the interaction of apoE isoforms with amyloid-ß (Aß) peptides plays a critical role in the progression of Alzheimer's disease, how they interact with each other remains poorly understood. Here, we investigate the molecular mechanism of apoE-Aß interactions by comparing the effects of the different domains of apoE on Aß. The kinetics of aggregation of Aß1-42 are delayed dramatically in the presence of substoichiometric, nanomolar concentrations of N-terminal fragment (NTF), C-terminal fragment (CTF) and full-length apoE both in lipid-free and in lipidated forms. However, interactions between apoE and Aß as measured by intermolecular Förster resonance energy transfer (FRET) analysis were found to be minimal at t = 0 but to increase in a time-dependent manner. Thus, apoE must interact with one or more 'intermediates' rather than the monomers of Aß. Kinetics of FRET between full-length apoE4 labelled with EDANS at position 62 or 139 or 210 or 247 or 276, and tetramethylrhodamine-labelled Aß (TMR-Aß), further support an involvement of all the three domains of apoE in the interactions. However, the above-mentioned residues do not appear to form a single pocket in the 3-dimensional structure of apoE. A competitive binding assay examining the effects of unlabelled fragments or full-length apoE on the FRET between EDANS-apoE and TMR-Aß show that binding affinity of the full-length apoE to Aß is much higher than that of the fragments. Furthermore, apoE4 is found to interact more strongly than apoE3. We hypothesize that high affinity of the apoE-Aß interaction is attained due to multivalent binding mediated by multiple interactions between oligomeric Aß and full-length apoE.


Subject(s)
Amyloid beta-Peptides/metabolism , Apolipoproteins E/metabolism , Amyloid beta-Peptides/chemistry , Animals , Apolipoprotein E3/chemistry , Apolipoprotein E3/metabolism , Apolipoprotein E4/chemistry , Apolipoprotein E4/metabolism , Apolipoproteins E/chemistry , Fluorescence Resonance Energy Transfer , Humans , Kinetics , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Protein Binding
7.
ACS Chem Neurosci ; 10(5): 2229-2236, 2019 05 15.
Article in English | MEDLINE | ID: mdl-30855940

ABSTRACT

Altered intestinal permeability has been correlated with Parkinson's pathophysiology in the enteric nervous system, before manifestations in the central nervous system (CNS). The inflammatory endotoxin or lipopolysaccharide (LPS) released by gut bacteria is known to modulate α-synuclein amyloidogenesis through the formation of intermediate nucleating species. Here, biophysical techniques in conjunction with microscopic images revealed the molecular interaction between lipopolysaccharide and α-synuclein that induce rapid nucleation events. This heteromolecular interaction stabilizes the α-helical intermediates in the α-synuclein aggregation pathway. Multitude NMR studies probed the residues involved in the LPS-binding structural motif that modulates the nucleating forms, affecting the cellular internalization and associated cytotoxicity. Collectively, our data characterizes this heteromolecular interaction associated with an alternative pathway in Parkinson's disease progression.


Subject(s)
Gastrointestinal Microbiome/physiology , Lipopolysaccharides/pharmacology , Protein Aggregates/drug effects , alpha-Synuclein/metabolism , Cell Line, Tumor , Enteric Nervous System/metabolism , Humans , Neurons/drug effects , Neurons/metabolism , Permeability
8.
Chem Commun (Camb) ; 55(31): 4483-4486, 2019 Apr 11.
Article in English | MEDLINE | ID: mdl-30917192

ABSTRACT

Using NMR to probe transient binding of Aß1-40 monomers to fibers, we find partially bound conformations with the highest degree of interaction near F19-K28 and a lesser degree of interaction near the C-terminus (L34-G37). This represents a shift away from the KLVFFA recognition sequence (residues 16-21) currently used for inhibitor design.


Subject(s)
Amyloid beta-Peptides/chemistry , Nuclear Magnetic Resonance, Biomolecular , Peptide Fragments/chemistry , Amino Acid Sequence , Amyloid beta-Peptides/metabolism , Microscopy, Electron , Peptide Fragments/metabolism , Protein Aggregates , Sonication
9.
Biochim Biophys Acta Proteins Proteom ; 1867(4): 405-415, 2019 04.
Article in English | MEDLINE | ID: mdl-30659960

ABSTRACT

Subcutaneous insulin delivery serves as the major treatment for the ever-increasing spread of type II diabetes worldwide. However, long-term exposure to insulin results in local aggregates at the site of injection. This therapeutic concern accentuates the need to develop newer effective excipients to stabilize the insulin in pharmaceutical formulations. The fact that in normal physiological conditions, insulin interacts with the amylin hormone co-secreted from the pancreas, we targeted a peptide-mimetic approach based on the amylin sequence. The amylin-fibrillating core (NL6- N22FGAIL27 from the human Islet Amyloid Poly-Peptide) and its derivative NFGAXL (NL6X, X = 2-aminobenzoic acid) were used as potential inhibitory peptides against insulin amyloidogenesis. The fibrillation kinetics in the presence of the inhibitors was studied using an array of biophysical and microscopic techniques. High-resolution NMR spectroscopy enabled probing of the inhibitory interaction at an atomic resolution. Our results highlight the potential of using the naturally evolved NL6 peptide as an effective inhibitor against insulin fibrillation.


Subject(s)
Amyloid/chemistry , Insulin/chemistry , Islet Amyloid Polypeptide/chemistry , Peptide Fragments/chemistry , Amino Acid Sequence , Molecular Dynamics Simulation
10.
Methods Enzymol ; 611: 383-421, 2018.
Article in English | MEDLINE | ID: mdl-30471694

ABSTRACT

Fluorescence correlation spectroscopy (FCS) is a single-molecule sensitive technique with widespread applications in biophysics. However, conventional microscope-based FCS setups have limitations in performing certain experiments such as those requiring agitations such as stirring or heating, and those involving measurements in solvents with the mismatch of refractive indices. We have recently developed an FCS setup that is suitable for performing measurements inside regular cuvettes. The cuvette-FCS is suitable for performing single-molecule measurements in experiments that are regularly performed in spectrofluorometers but are generally avoided in microscope-based FCS. Here we describe building and characterization of the performance of the cuvette-FCS setup in detail. Finally, we have used a natively folded protein and an intrinsically disordered protein to demonstrate and describe how cuvette-FCS can be applied conveniently to measure urea-dependent expansion of hydrodynamic size of proteins.


Subject(s)
Intrinsically Disordered Proteins/chemistry , Spectrometry, Fluorescence/methods , Algorithms , Animals , Equipment Design , Humans , Hydrodynamics , Protein Conformation , Protein Denaturation , Protein Folding , Spectrometry, Fluorescence/instrumentation , Urea/chemistry
11.
Biophys J ; 115(3): 455-466, 2018 08 07.
Article in English | MEDLINE | ID: mdl-30089243

ABSTRACT

We have developed a fluorescence correlation spectroscopy (FCS) setup for performing single-molecule measurements on samples inside regular cuvettes. The cuvette FCS uses a horizontally mounted extra-long working distance, 0.7 NA, air objective with a working distance of >1.8 mm instead of a high NA water or oil immersion objective. The performance of the cuvette FCS is found to be highly sensitive to the quality and alignment of the cuvette. The radial resolution and effective observation volume obtained using the optimized setup are ∼340 nm and 1.8 fL, respectively. The highest molecular brightness and the signal/noise ratio in the autocorrelation data achieved using an aqueous solution of rhodamine B are greater than 44 kHz and 110, respectively. Here, we demonstrate two major advantages of cuvette FCS. For example, the cuvette FCS can be used for measurements over a wide range of temperatures that is beyond the range permitted in the microscope-based FCS. Furthermore, cuvette FCS can be coupled to automatic titrators to study urea-dependent unfolding of proteins with unprecedented accuracy. The ease of use and compatibility with various accessories will enable applications of cuvette FCS in the experiments that are regularly performed in spectrofluorometers but are generally avoided in microscope-based FCS.


Subject(s)
Spectrometry, Fluorescence/methods , Buffers , Calibration , Hydrogen-Ion Concentration , Phosphates/chemistry , Protein Denaturation/drug effects , Rhodamines/chemistry , Spectrometry, Fluorescence/instrumentation , Temperature , Urea/pharmacology
12.
Biophys J ; 114(4): 800-811, 2018 02 27.
Article in English | MEDLINE | ID: mdl-29490242

ABSTRACT

Amyloids are heterogeneous assemblies of extremely stable fibrillar aggregates of proteins. Although biological activities of the amyloids are dependent on its conformation, quantitative evaluation of heterogeneity of amyloids has been difficult. Here we use disaggregation of the amyloids of tetramethylrhodamine-labeled Aß (TMR-Aß) to characterize its stability and heterogeneity. Disaggregation of TMR-Aß amyloids, monitored by fluorescence recovery of TMR, was negligible in native buffer even at low nanomolar concentrations but the kinetics increased exponentially with addition of denaturants such as urea or GdnCl. However, dissolution of TMR-Aß amyloids is different from what is expected in the case of thermodynamic solubility. For example, the fraction of soluble amyloids is found to be independent of total concentration of the peptide at all concentrations of the denaturants. Additionally, soluble fraction is dependent on growth conditions such as temperature, pH, and aging of the amyloids. Furthermore, amyloids undissolved in a certain concentration of the denaturant do not show any further dissolution after dilution in the same solvent; instead, these require higher concentrations of the denaturant. Taken together, our results indicate that amyloids are a heterogeneous ensemble of metastable states. Furthermore, dissolution of each structurally homogeneous member requires a unique threshold concentration of denaturant. Fraction of soluble amyloids as a function of concentration of denaturants is found to be sigmoidal. The sigmoidal curve becomes progressively steeper with progressive seeding of the amyloids, although the midpoint remains unchanged. Therefore, heterogeneity of the amyloids is a major determinant of the steepness of the sigmoidal curve. The sigmoidal curve can be fit assuming a normal distribution for the population of the amyloids of various kinetic stabilities. We propose that the mean and the standard deviation of the normal distribution provide quantitative estimates of mean kinetic stability and heterogeneity, respectively, of the amyloids in a certain preparation.


Subject(s)
Amyloid/chemistry , Fluorescence , Protein Aggregates , Rhodamines/chemistry , Humans , Kinetics , Temperature , Thermodynamics , Urea
13.
Protein Sci ; 27(7): 1252-1261, 2018 07.
Article in English | MEDLINE | ID: mdl-29498118

ABSTRACT

Transthyretin (TTR) is a homotetrameric protein that is found in the plasma and cerebrospinal fluid. Dissociation of TTR tetramers sets off a downhill cascade of amyloid formation through polymerization of monomeric TTR. Interestingly, TTR has an additional, biologically relevant activity, which pertains to its ability to slow the progression of amyloid beta (Aß) associated pathology in transgenic mice. In vitro, both TTR and a kinetically stable variant of monomeric TTR (M-TTR) inhibit the fibril formation of Aß1-40/42 molecules. Published evidence suggests that tetrameric TTR binds preferentially to Aß monomers, thus destabilizing fibril formation by depleting the pool of Aß monomers from aggregating mixtures. Here, we investigate the effects of M-TTR on the in vitro aggregation of Aß1-42 . Our data confirm previous observations that fibril formation of Aß is suppressed in the presence of sub-stoichiometric amounts of M-TTR. Despite this, we find that sub-stoichiometric levels of M-TTR are not bona fide inhibitors of aggregation. Instead, they co-aggregate with Aß to promote the formation of large, micron-scale insoluble, non-fibrillar amorphous deposits. Based on fluorescence correlation spectroscopy measurements, we find that M-TTR does not interact with monomeric Aß. Two-color coincidence analysis of the fluorescence bursts of Aß and M-TTR labeled with different fluorophores shows that M-TTR co-assembles with soluble Aß aggregates and this appears to drive the co-aggregation into amorphous precipitates. Our results suggest that mimicking the co-aggregation activity with protein-based therapeutics might be a worthwhile strategy for rerouting amyloid beta peptides into inert, insoluble, and amorphous deposits.


Subject(s)
Amyloid beta-Peptides/chemistry , Amyloid beta-Peptides/metabolism , Prealbumin/chemistry , Prealbumin/pharmacology , Chemical Precipitation , Humans , Microscopy, Confocal , Microscopy, Electron, Transmission , Mutation , Prealbumin/genetics , Protein Aggregates/drug effects , Protein Multimerization
14.
Biochim Biophys Acta Biomembr ; 1860(9): 1917-1926, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29428501

ABSTRACT

Injection of exogenous insulin in the subcutaneous mass has been a proven therapy for type II diabetes. However, chronic administration of insulin often develops local amyloidosis at the injection site, pathologically known as "Insulin Ball". This reduces the insulin bioavailability and exacerbates the disease pathology. Thus, the molecular interaction between insulin and the recipient's membrane surface plays a co-operative role in accelerating the amyloidosis. This interaction, however, is different from the molecular interaction of insulin with the native membranous environment of the pancreatic ß-cells. The differential membrane mediated interaction that directly affects the aggregation kinetics of insulin remains elusive yet intriguing to understand the mechanism of pathological development. In this study we have characterized the interactions of insulin at different states with model eukaryotic membranes using high and low-resolution spectroscopic techniques in combination with microscopic investigation. Our results show that insulin amyloid intermediates are capable of interacting with model membranes with variable functional affinity towards the different compositions. Fluorescence correlation spectroscopy confirms the aggregation states of insulin in presence of the eukaryotic model membranes while solid-state NMR spectroscopy in conjugation with differential scanning calorimetry elucidates the molecular interaction of insulin intermediates with the lipid head groups along with the acyl chains. Additionally, dye leakage assays support the eukaryotic model membrane disruption by insulin intermediates, similar to hIAPP and Aß40, as previously reported. Thus, the present study establishes the distinct mode of interactions of insulin amyloid with pancreatic ß-cell and general mammalian cell mimicking membranes.

15.
J Am Chem Soc ; 137(8): 2984-95, 2015 Mar 04.
Article in English | MEDLINE | ID: mdl-25664638

ABSTRACT

In aqueous solutions with high concentrations of chemical denaturants such as urea and guanidinium chloride (GdmCl) proteins expand to populate heterogeneous conformational ensembles. These denaturing environments are thought to be good solvents for generic protein sequences because properties of conformational distributions align with those of canonical random coils. Previous studies showed that water is a poor solvent for polypeptide backbones, and therefore, backbones form collapsed globular structures in aqueous solvents. Here, we ask if polypeptide backbones can intrinsically undergo the requisite chain expansion in aqueous solutions with high concentrations of urea and GdmCl. We answer this question using a combination of molecular dynamics simulations and fluorescence correlation spectroscopy. We find that the degree of backbone expansion is minimal in aqueous solutions with high concentrations of denaturants. Instead, polypeptide backbones sample conformations that are denaturant-specific mixtures of coils and globules, with a persistent preference for globules. Therefore, typical denaturing environments cannot be classified as good solvents for polypeptide backbones. How then do generic protein sequences expand in denaturing environments? To answer this question, we investigated the effects of side chains using simulations of two archetypal sequences with amino acid compositions that are mixtures of charged, hydrophobic, and polar groups. We find that side chains lower the effective concentration of backbone amides in water leading to an intrinsic expansion of polypeptide backbones in the absence of denaturants. Additional dilution of the effective concentration of backbone amides is achieved through preferential interactions with denaturants. These effects lead to conformational statistics in denaturing environments that are congruent with those of canonical random coils. Our results highlight the role of side chain-mediated interactions as determinants of the conformational properties of unfolded states in water and in influencing chain expansion upon denaturation.


Subject(s)
Amides/chemistry , Peptides/chemistry , Protein Denaturation/drug effects , Amino Acid Sequence , Dose-Response Relationship, Drug , Guanidine/pharmacology , Hydrophobic and Hydrophilic Interactions , Molecular Dynamics Simulation , Molecular Sequence Data , Protein Structure, Secondary , Urea/pharmacology , Water/chemistry
16.
Biochemistry ; 53(40): 6323-31, 2014 Oct 14.
Article in English | MEDLINE | ID: mdl-25207746

ABSTRACT

Deposition of amyloid-ß (Aß) in Alzheimer's disease (AD) is strongly correlated with the APOE genotype. However, the role of apolipoprotein E (apoE) in Aß aggregation has remained unclear. Here we have used different apoE preparations, such as recombinant protein or protein isolated from cultured astrocytes, to examine the effect of apoE on the aggregation of both Aß1-40 and Aß1-42. The kinetics of aggregation, measured by the loss of fluorescence of tetramethylrhodamine-labeled Aß, is shown to be dramatically slowed by the presence of substoichiometric concentrations of apoE. Using these concentrations, we conclude that apoE binds primarily to and affects the growth of oligomers that lead to the nuclei required for fibril growth. At higher apoE concentrations, the protein also binds to Aß fibrils, resulting in fibril stabilization and a slower rate of fibril growth. The aggregation of Aß1-40 is dependent on the apoE isoform, being the most dramatic for apoE4 and less so for apoE3 and apoE2. Our results indicate that the detrimental role of apoE4 in AD could be related to apoE-induced stabilization of the soluble but cytotoxic oligomeric forms and intermediates of Aß, as well as fibril stabilization.


Subject(s)
Amyloid beta-Peptides/chemistry , Apolipoproteins E/chemistry , Peptide Fragments/chemistry , Amyloid/chemistry , Amyloid beta-Peptides/ultrastructure , Apolipoproteins E/ultrastructure , Humans , Kinetics , Peptide Fragments/ultrastructure , Protein Binding , Protein Multimerization , Protein Stability , Protein Structure, Quaternary
17.
Org Lett ; 16(14): 3640-3, 2014 Jul 18.
Article in English | MEDLINE | ID: mdl-25003699

ABSTRACT

Emerging paradigms mandate discovery of imaging agents for diagnosing Alzheimer's disease (AD) prior to appearance of clinical symptoms. To accomplish this objective, a novel heterocyclic molecule (4) was synthesized and validated as Aß targeted probe. The agent shows labeling of numerous diffuse Aß plaques in confirmed AD human brain tissues and traverses the blood-brain barrier to enable labeling of parenchymal Aß plaques in live mice (APP(±)/PS1(±)) brains.


Subject(s)
Alzheimer Disease/pathology , Benzothiazoles/chemical synthesis , Brain/pathology , Fluorescent Dyes/chemical synthesis , Plaque, Amyloid/pathology , Pyridines/chemical synthesis , Animals , Benzothiazoles/chemistry , Coloring Agents , Diagnostic Imaging , Fluorescent Dyes/chemistry , Humans , Male , Mice , Mice, Transgenic , Molecular Structure , Positron-Emission Tomography , Pyridines/chemistry
18.
Proc Natl Acad Sci U S A ; 110(50): 20075-80, 2013 Dec 10.
Article in English | MEDLINE | ID: mdl-24282292

ABSTRACT

Huntington disease is caused by mutational expansion of the CAG trinucleotide within exon 1 of the huntingtin (Htt) gene. Exon 1 spanning N-terminal fragments (NTFs) of the Htt protein result from aberrant splicing of transcripts of mutant Htt. NTFs typically encompass a polyglutamine tract flanked by an N-terminal 17-residue amphipathic stretch (N17) and a C-terminal 38-residue proline-rich stretch (C38). We present results from in vitro biophysical studies that quantify the driving forces for and mechanisms of polyglutamine aggregation as modulated by N17 and C38. Although N17 is highly soluble by itself, it lowers the saturation concentration of soluble NTFs and increases the driving force, vis-à-vis homopolymeric polyglutamine, for forming insoluble aggregates. Kinetically, N17 accelerates fibril formation and destabilizes nonfibrillar intermediates. C38 is also highly soluble by itself, and it lends its high intrinsic solubility to lower the driving force for forming insoluble aggregates by increasing the saturation concentration of soluble NTFs. In NTFs with both modules, N17 and C38 act synergistically to destabilize nonfibrillar intermediates (N17 effect) and lower the driving force for forming insoluble aggregates (C38 effect). Morphological studies show that N17 and C38 promote the formation of ordered fibrils by NTFs. Homopolymeric polyglutamine forms a mixture of amorphous aggregates and fibrils, and its aggregation mechanisms involve early formation of heterogeneous distributions of nonfibrillar species. We propose that N17 and C38 act as gatekeepers that control the intrinsic heterogeneities of polyglutamine aggregation. This provides a biophysical explanation for the modulation of in vivo NTF toxicities by N17 and C38.


Subject(s)
Models, Genetic , Nerve Tissue Proteins/genetics , Peptides/metabolism , Terminal Repeat Sequences/genetics , Trinucleotide Repeat Expansion/genetics , Amino Acid Sequence , Dimerization , Exons/genetics , Humans , Huntingtin Protein , Kinetics , Linear Models , Microscopy, Electron, Transmission , Microscopy, Fluorescence , Molecular Dynamics Simulation , Molecular Sequence Data , Sequence Alignment , Temperature
19.
Protein Sci ; 22(12): 1820-5, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24115173

ABSTRACT

Apolipoprotein E (apoE), first described in 1973, is a truly fascinating protein. While studies initially focused on its role in cholesterol and lipid metabolism, one apoE isoform (apoE4) is a major risk factor for development of late onset Alzheimer's disease. Yet the difference between apoE3, the common form, and apoE4 is a single amino acid of the 299 in this 34 kDa protein. Structure determination of the two domain full length apoE3 protein was only accomplished in 2011 and supports the notion that mutations in the N-terminal domain can be propagated through the structure to the C-terminal domain. Understanding the structural differences between apoE3 and apoE4 is critical for finding ways to modulate the deleterious effect of apoE4.


Subject(s)
Alzheimer Disease/etiology , Apolipoprotein E3/chemistry , Apolipoprotein E3/metabolism , Apolipoprotein E4/chemistry , Apolipoprotein E4/genetics , Alzheimer Disease/metabolism , Apolipoprotein E3/genetics , Apolipoprotein E4/metabolism , Humans , Models, Molecular , Mutation , Protein Conformation , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Protein Structure, Secondary , Protein Structure, Tertiary
20.
Proc Natl Acad Sci U S A ; 110(19): E1807-16, 2013 May 07.
Article in English | MEDLINE | ID: mdl-23620513

ABSTRACT

Apolipoprotein E gene (APOE) alleles may shift the onset of Alzheimer's disease (AD) through apoE protein isoforms changing the probability of amyloid-ß (Aß) accumulation. It has been proposed that differential physical interactions of apoE isoforms with soluble Aß (sAß) in brain fluids influence the metabolism of Aß, providing a mechanism to account for how APOE influences AD risk. In contrast, we provide clear evidence that apoE and sAß interactions occur minimally in solution and in the cerebrospinal fluid of human subjects, producing apoE3 and apoE4 isoforms as assessed by multiple biochemical and analytical techniques. Despite minimal extracellular interactions with sAß in fluid, we find that apoE isoforms regulate the metabolism of sAß by astrocytes and in the interstitial fluid of mice that received apoE infusions during brain Aß microdialysis. We find that a significant portion of apoE and sAß compete for the low-density lipoprotein receptor-related protein 1 (LRP1)-dependent cellular uptake pathway in astrocytes, providing a mechanism to account for apoE's regulation of sAß metabolism despite minimal evidence of direct interactions in extracellular fluids. We propose that apoE influences sAß metabolism not through direct binding to sAß in solution but through its actions with other interacting receptors/transporters and cell surfaces. These results provide an alternative frame work for the mechanistic explanations on how apoE isoforms influence the risk of AD pathogenesis.


Subject(s)
Amyloid beta-Peptides/metabolism , Apolipoproteins E/metabolism , Gene Expression Regulation , Alzheimer Disease/diagnosis , Alzheimer Disease/genetics , Animals , Brain/pathology , Cell Line , Cholesterol/metabolism , Humans , Mice , Mice, Knockout , Neurodegenerative Diseases/metabolism , Protein Binding , Protein Isoforms/metabolism , Time Factors
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