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1.
J Inorg Biochem ; 246: 112291, 2023 09.
Article in English | MEDLINE | ID: mdl-37352655

ABSTRACT

The water-soluble ruthenium complex cis-[Ru(dcbpyH)2(PTAH)2]Cl2·3H2O (1) (dcbpy = 4,4'-dicarboxy-2,2'-bipyridine; PTA = 1,3,5-triaza-7-phosphaadamantane) has been synthesized and characterised by NMR, IR spectroscopy, elemental analysis, and single-crystal X-ray diffraction. The optical properties of 1 were studied, including photoactivation under visible light, as well as its biological properties, together with those of the previously published Ru complexes cis-[Ru(bpy)2(PTA)2]Cl2 (2), trans-[Ru(bpy)2(PTA)2](CF3SO3)2 (3) and cis-[Ru(bpy)2(H2O)(PTA)](CF3SO3)2 (4) (bpy = 2,2'-bipyridine). Anticancer activities of the complexes against human lung (A549), cervical (HeLa) and prostate (PC3) carcinoma cells were evaluated under dark conditions and upon photoactivation with visible light. None of the complexes exhibited cytotoxic activity in the absence of light irradiation (IC50 > 100 µM). However, after photoactivation, the cytotoxicity of complexes 1, 2 and 3 against the three cell lines markedly increased, resulting in IC50 values between 25.3 µM and 9.3 µM. Notably, these complexes did not show toxicity against red blood cells. These findings show the potential of complexes 1, 2 and, particularly, 3 for selective and controlled cancer photochemotherapy. The reactivity of the Ru complexes against DNA under UV-Vis irradiation was studied by analysing plasmid mobility. Experimental data shows that 4 unfolds supercoiled DNA (SC DNA) both in the dark and under visible irradiation, while 1 and 3 are only active under light, being 2 inactive in either case. The unfolding activities of complexes 3 and 4 were dependent on the air present in the reaction. The measured intracellular levels of reactive oxygen species (ROS) upon irradiation with complexes 1, 2 and 3 suggest that their mechanism of action is related to oxidative stress.


Subject(s)
Antineoplastic Agents , Coordination Complexes , Ruthenium , Humans , 2,2'-Dipyridyl/chemistry , Organophosphorus Compounds/pharmacology , Organophosphorus Compounds/chemistry , Antineoplastic Agents/pharmacology , Antineoplastic Agents/chemistry , DNA/chemistry , Ruthenium/chemistry , Coordination Complexes/pharmacology , Coordination Complexes/chemistry
2.
Pathogens ; 12(3)2023 Feb 24.
Article in English | MEDLINE | ID: mdl-36986296

ABSTRACT

This study analyzed fifty years of severe malaria research worldwide. Malaria is a parasitic disease that continues to have a significant impact on global health, particularly in sub-Saharan Africa. Severe malaria, a severe and often fatal form of the disease, is a major public health concern. The study used different bibliometric indicators such as the number of publications, citations, authorship, and keywords to analyze the research trends, patterns, and progress made in the field of severe malaria. The study covers the period from 1974 to 2021 and includes articles from Scopus. The results of the study indicated that there has been a steady increase in the number of publications on severe malaria over the past fifty years, with a particular increase in the last decade. The study also showed that most of the publications are from USA and Europe, while the disease occurs in Africa, South-East Asia, and the Americas. The study also identified the most frequent keywords used in the publications, and the most influential journals and authors in the field. In conclusion, this bibliometric study provides a comprehensive overview of the research trends and patterns in the field of severe malaria over the past fifty years and highlights the areas that need more attention and research efforts.

3.
Genes (Basel) ; 12(1)2020 12 28.
Article in English | MEDLINE | ID: mdl-33379267

ABSTRACT

Plasmodium vivax Cysteine-Rich Protective Antigen (CyRPA) is a merozoite protein participating in the parasite invasion of human reticulocytes. During natural P. vivax infection, antibody responses against PvCyRPA have been detected. In children, low anti-CyRPA antibody titers correlated with clinical protection, which suggests this protein as a potential vaccine candidate. This work analyzed the genetic and amino acid diversity of pvcyrpa in Mexican and global parasites. Consensus coding sequences of pvcyrpa were obtained from seven isolates. Other sequences were extracted from a repository. Maximum likelihood phylogenetic trees, genetic diversity parameters, linkage disequilibrium (LD), and neutrality tests were analyzed, and the potential amino acid polymorphism participation in B-cell epitopes was investigated. In 22 sequences from Southern Mexico, two synonymous and 21 nonsynonymous mutations defined nine private haplotypes. These parasites had the highest LD-R2 index and the lowest nucleotide diversity compared to isolates from South America or Asia. The nucleotide diversity and Tajima's D values varied across the coding gene. The exon-1 sequence had greater diversity and Rm values than those of exon-2. Exon-1 had significant positive values for Tajima's D, ß-α values, and for the Z (HA: dN > dS) and MK tests. These patterns were similar for parasites of different origin. The polymorphic amino acid residues at PvCyRPA resembled the conformational B-cell peptides reported in PfCyRPA. Diversity at pvcyrpa exon-1 is caused by mutation and recombination. This seems to be maintained by balancing selection, likely due to selective immune pressure, all of which merit further study.


Subject(s)
Antigens, Protozoan/genetics , Plasmodium vivax/genetics , Protozoan Proteins/genetics , Recombination, Genetic/immunology , Selection, Genetic/immunology , Antigens, Protozoan/immunology , Cysteine/genetics , Epitopes, B-Lymphocyte/genetics , Epitopes, B-Lymphocyte/immunology , Exons/genetics , Host-Parasite Interactions/genetics , Host-Parasite Interactions/immunology , Humans , Malaria, Vivax/immunology , Malaria, Vivax/parasitology , Mutation , Plasmodium vivax/immunology , Plasmodium vivax/pathogenicity , Polymorphism, Genetic/immunology , Protozoan Proteins/immunology , Sequence Analysis, DNA
4.
Int J Mol Sci ; 21(3)2020 Jan 22.
Article in English | MEDLINE | ID: mdl-31979077

ABSTRACT

Low stability of transgenes and high variability of their expression levels among the obtained transformants are still pending challenges in the nuclear genetic transformation of microalgae. We have generated a new multicistronic microalgal expression plasmid, called Phyco69, to make easier the large phenotypic screening usually necessary for the selection of high-expression stable clones. This plasmid contains a polylinker region (PLK) where any gene of interest (GOI) can be inserted and get linked, through a short viral self-cleaving peptide to the amino terminus of the aminoglycoside 3'-phosphotransferase (APHVIII) from Streptomyces rimosus, which confers resistance to the antibiotic paromomycin. The plasmid has been validated by expressing a second antibiotic resistance marker, the ShBLE gene, which confers resistance to phleomycin. It has been shown, by RT-PCR and by phenotypic studies, that the fusion of the GOI to the selective marker gene APHVIII provides a simple method to screen and select the transformants with the highest level of expression of both the APHVIII gene and the GOI among the obtained transformants. Immunodetection studies have shown that the multicistronic transcript generated from Phyco69 is correctly processed, producing independent gene products from a common promoter.


Subject(s)
Microalgae/genetics , Plasmids/genetics , Transgenes/genetics , Anti-Bacterial Agents/pharmacology , Genetic Markers/genetics , Kanamycin Kinase/genetics , Paromomycin/pharmacology , Promoter Regions, Genetic/genetics , Streptomyces/drug effects , Streptomyces/genetics , Transformation, Genetic/genetics
5.
Appl Microbiol Biotechnol ; 103(5): 2381-2390, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30685811

ABSTRACT

Cryopreservation is a common methodology for long-term microalgae storage. Current cryopreservation methods are based on using diverse cryoprotectants and two-step cooling protocols, followed by sample storage at the temperature of liquid nitrogen (- 196 °C). However, the use of this methodology requires a continuous liquid N2 supply as well as facilities with dedicated equipment, which is not affordable for every laboratory. In our work, we report on the successful development of a simple and cost-effective method for the long-term cryogenic storage of Tetradesmus obliquus at temperatures (- 80 °C) used in commonly available deep freezers that are more readily accessible to laboratories. Two procedures were evaluated that were originally devised for other microalgae; this was followed by the optimization of critical parameters such as the sample's microalgal concentration and the cryoprotectant reagent's incubation time. Cell viability was monitored using the survival rates obtained by direct agar plating and the growth recovery times in liquid cultures. Viability-related variables were recorded following different storage times of up to 3 years. The main operational factors involved in the process (cell concentration, incubation time, and storage time) were statistically analyzed with regard to their influence on the survival rate. The statistical analysis showed interdependence (a two-factor interaction) between the cellular concentration and the cryoprotectant's incubation time, on the one hand, and between the incubation time and the storage time on the other. Survival rates above 70% were obtained under optimized conditions after 3 months of storage, along with 20-35% viabilities after 3 years. These results open up the possibility of extending this method to other Scenedesmaceae, or even other microalgal species, and for its use in resource-limited laboratories.


Subject(s)
Chlorophyceae/cytology , Cryopreservation/methods , Cryoprotective Agents/pharmacology , Microalgae/cytology , Cell Survival/physiology , Cold Temperature , Cryopreservation/economics
6.
Sensors (Basel) ; 17(3)2017 Mar 14.
Article in English | MEDLINE | ID: mdl-28335417

ABSTRACT

The first sequencing of a complete genome was published forty years ago by the double Nobel Prize in Chemistry winner Frederick Sanger. That corresponded to the small sized genome of a bacteriophage, but since then there have been many complex organisms whose DNA have been sequenced. This was possible thanks to continuous advances in the fields of biochemistry and molecular genetics, but also in other areas such as nanotechnology and computing. Nowadays, sequencing sensors based on genetic material have little to do with those used by Sanger. The emergence of mass sequencing sensors, or new generation sequencing (NGS) meant a quantitative leap both in the volume of genetic material that was able to be sequenced in each trial, as well as in the time per run and its cost. One can envisage that incoming technologies, already known as fourth generation sequencing, will continue to cheapen the trials by increasing DNA reading lengths in each run. All of this would be impossible without sensors and detection systems becoming smaller and more precise. This article provides a comprehensive overview on sensors for DNA sequencing developed within the last 40 years.


Subject(s)
Sequence Analysis, DNA , Base Sequence
7.
Plant J ; 89(1): 58-72, 2017 01.
Article in English | MEDLINE | ID: mdl-27599169

ABSTRACT

Sex determination in Rumex acetosa, a dioecious plant with a complex XY1 Y2 sex chromosome system (females are XX and males are XY1 Y2 ), is not controlled by an active Y chromosome but depends on the ratio between the number of X chromosomes and autosomes. To gain insight into the molecular mechanisms of sex determination, we generated a subtracted cDNA library enriched in genes specifically or predominantly expressed in female floral buds in early stages of development, when sex determination mechanisms come into play. In the present paper, we report the molecular and functional characterization of FEM32, a gene encoding a protein that shares a common architecture with proteins in different plants, animals, bacteria and fungi of the aerolysin superfamily; many of these function as ß pore-forming toxins. The expression analysis, assessed by northern blot, RT-PCR and in situ hybridization, demonstrates that this gene is specifically expressed in flowers in both early and late stages of development, although its transcripts accumulate much more in female flowers than in male flowers. The ectopic expression of FEM32 under both the constitutive promoter 35S and the flower-specific promoter AP3 in transgenic tobacco showed no obvious alteration in vegetative development but was able to alter floral organ growth and pollen fertility. The 35S::FEM32 and AP3::FEM32 transgenic lines showed a reduction in stamen development and pollen viability, as well as a diminution in fruit set, fruit development and seed production. Compared with other floral organs, pistil development was, however, enhanced in plants overexpressing FEM32. According to these effects, it is likely that FEM32 functions in Rumex by arresting stamen and pollen development during female flower development. The aerolysin-like pore-forming proteins of eukaryotes are mainly involved in defence mechanisms against bacteria, fungi and insects and are also involved in apoptosis and programmed cell death (PCD), a mechanism that could explain the role of FEM32 in Rumex sex determination.


Subject(s)
Bacterial Toxins/genetics , Flowers/genetics , Nicotiana/genetics , Plant Infertility/genetics , Plant Proteins/genetics , Pore Forming Cytotoxic Proteins/genetics , Rumex/genetics , Amino Acid Sequence , Bacterial Toxins/classification , Flowers/growth & development , Fruit/genetics , Fruit/growth & development , Gene Expression Profiling/methods , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Phylogeny , Plant Proteins/classification , Plants, Genetically Modified , Pollen/genetics , Pollen/growth & development , Pore Forming Cytotoxic Proteins/classification , Rumex/growth & development , Seeds/genetics , Seeds/growth & development , Sequence Homology, Amino Acid , Nicotiana/growth & development
8.
J Agric Food Chem ; 64(1): 277-85, 2016 Jan 13.
Article in English | MEDLINE | ID: mdl-26666454

ABSTRACT

Acyltransferase enzymes have been reported as useful biotechnological tools in order to increase oil yield and modify fatty acid composition. Macadamia species are able to accumulate unusually high levels of palmitoleic acid that besides oleic acid amounts to over 80% of monounsaturated fatty acids in the seed oil. In this work, a gene encoding a type 1 acyl-CoA:diacylglycerol acyltransferase (DGAT1) was cloned from M. tetraphylla. DGAT activity of the protein encoded by MtDGAT1 was confirmed by heterologous expression in a yeast mutant. Fatty acid composition of triacylglycerols synthesized by MtDGAT1 was compared to that of DGAT1 enzymes from Arabidopsis and Echium, with the results suggesting a substrate preference for monounsaturated over polyunsaturated fatty acids. Characteristics of MtDGAT1 may contribute to biochemical mechanisms determining the particular fatty acid composition of Macadamia oil and also indicate the possibility of using this enzyme in biotechnological approaches where a reduction of polyunsaturated fatty acids in the oil is desired.


Subject(s)
Cloning, Molecular , Diacylglycerol O-Acyltransferase/chemistry , Diacylglycerol O-Acyltransferase/genetics , Macadamia/enzymology , Plant Proteins/chemistry , Plant Proteins/genetics , Triglycerides/chemistry , Amino Acid Sequence , Diacylglycerol O-Acyltransferase/metabolism , Enzyme Stability , Gene Expression , Macadamia/chemistry , Macadamia/genetics , Molecular Sequence Data , Nuts/chemistry , Nuts/enzymology , Nuts/genetics , Plant Proteins/metabolism , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Sequence Alignment , Triglycerides/metabolism
9.
Biotechnol Lett ; 36(12): 2551-8, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25214215

ABSTRACT

The development of the microalgal industry requires advances in every aspect of microalgal biotechnology. In this regard, the availability of genetic engineering tools for industrially-promising species is key. As Scenedesmus almeriensis has promise for industrial use, we describe here an Agrobacterium-based methodology that allows stable genetic transformation of it for the first time, thus opening the way to its genetic manipulation. Transformation was accomplished using two different antibiotic resistance genes [hygromicine phophotransferase (hpt) and Shble] and it is credited by PCR amplification of both hpt/Shble and GUS genes and by the ß-glucuronidase activity of transformed cells. Nevertheless, the single 35S promoter seems unable to direct gene expression to a convenient level in S. almeriensis as suggested by the low GUS enzymatic activity. Temperature was critical for the transformation efficiency.


Subject(s)
Metabolic Engineering/methods , Molecular Biology/methods , Scenedesmus/genetics , Transformation, Genetic , Agrobacterium/genetics , Biotechnology/methods , Drug Resistance, Microbial , Gene Expression , Scenedesmus/radiation effects , Selection, Genetic , Temperature
10.
Biochim Biophys Acta ; 1844(9): 1427-36, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24792386

ABSTRACT

The glutathione S-transferase from Plasmodium falciparum presents distinct features which are absent from mammalian GST isoenzyme counterparts. Most apparent among these are the ability to tetramerize and the presence of a flexible loop. The loop, situated between the 113-119 residues, has been reported necessary for the tetramerization process. In this article, we report that a residue outside of this loop, Asn112, is a key to the process - to the point where the single Asn112Leu mutation prevents tetramerization altogether. We propose that a structural pattern involving the interaction of the Asn112 and Lys117 residues from two neighboring subunits plays a role in keeping the tetramer structure stable. We also report that, for the tetramerization of the wild-type PfGST to occur, phosphate or pyrophosphate anions must be present. In other words, tetramerization is a phosphate- or pyrophosphate-induced process. Furthermore, the presence of magnesium reinforces this induction. We present experimental evidence for these claims as well as a preliminary calorimetric and kinetic study of the dimeric Asn112Leu PfGST mutant. We also propose a putative binding site for phosphate or pyrophosphate anions through a comparative structural analysis of PfGST and pyrophosphatases from several organisms. Our results highlight the differences between PfGST and the human isoenzymes, which make the parasite enzyme a suitable antimalarial target.


Subject(s)
Asparagine/chemistry , Diphosphates/chemistry , Glutathione Transferase/chemistry , Phosphates/chemistry , Plasmodium falciparum/chemistry , Protein Subunits/chemistry , Protozoan Proteins/chemistry , Asparagine/metabolism , Cations, Divalent , Diphosphates/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Glutathione Transferase/genetics , Glutathione Transferase/metabolism , Humans , Kinetics , Magnesium/chemistry , Magnesium/metabolism , Models, Molecular , Mutation , Phosphates/metabolism , Plasmodium falciparum/enzymology , Protein Multimerization , Protein Stability , Protein Structure, Secondary , Protein Structure, Tertiary , Protein Subunits/genetics , Protein Subunits/metabolism , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Species Specificity , Thermodynamics
11.
Langmuir ; 30(1): 234-42, 2014 Jan 14.
Article in English | MEDLINE | ID: mdl-24313322

ABSTRACT

Three novel gold nanoparticles containing multiple long, flexible linkers decorated with lactose, ß-cyclodextrin, and both simultaneously have been prepared. The interaction of such nanoparticles with ß-d-galactose-recognizing lectins peanut agglutinin (PNA) and human galectin-3 (Gal-3) was demonstrated by UV-vis studies. Gal-3 is well-known to be overexpressed in several human tumors and can act as a biorecognizable target. This technique also allowed us to estimate their loading capability toward the anticancer drug methotrexate (MTX). Both results make these glyconanoparticles potential site-specific delivery systems for anticancer drugs.


Subject(s)
Drug Delivery Systems , Gold/chemistry , Metal Nanoparticles/chemistry , beta-Cyclodextrins/chemistry , Agglutinins/chemistry , Blood Proteins , Galactose/chemistry , Galectin 3/chemistry , Galectins , Humans , Models, Molecular
12.
Lipids ; 48(7): 663-74, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23700249

ABSTRACT

Acyl-CoA:lysophosphatidylcholine acyltransferase (LPCAT, EC 2.3.1.23) catalyzes acylation of lysophosphatidylcholine (lysoPtdCho) to produce phosphatidylcholine (PtdCho), the main phospholipid in cellular membranes. This reaction is a key component of the acyl-editing process, involving recycling of the fatty acids (FA) mainly at the sn-2 position of PtdCho. Growing evidences indicate that the LPCAT reaction controls the direct entry of newly synthesized FA into PtdCho and, at least in some plant species, it has an important impact on the synthesis and composition of triacylglycerols. Here we describe the molecular characterization of the single LPCAT gene found in the genome of Ricinus communis (RcLPCAT) that is homologous to LPCAT genes of the MBOAT family previously described in Arabidopsis and Brassica. RcLPCAT is ubiquitously expressed in all organs of the castor plant. Biochemical properties have been studied by heterologous expression of RcLPCAT in the ale1 yeast mutant, defective in lysophospholipid acyltransferase activity. RcLPCAT preferentially acylates lysoPtdCho against other lysophospholipids (lysoPL) and does not discriminates the acyl chain in the acceptor, displaying a strong activity with alkyl lysoPL. Regarding the acyl-CoA donor, RcLPCAT uses monounsaturated fatty acid thioesters, such as oleoyl-CoA (18:1-CoA), as preferred donors, while it has a low activity with saturated fatty acids and shows a poor utilization of ricinoleoyl-CoA (18:1-OH-CoA). These characteristics are discussed in terms of a possible role of RcLPCAT in regulating the entry of FA into PtdCho and the exclusion from the membranes of the hydroxylated FA.


Subject(s)
1-Acylglycerophosphocholine O-Acyltransferase/genetics , Lysophosphatidylcholines/metabolism , Phosphatidylcholines/metabolism , Plant Proteins/genetics , Ricinus communis/chemistry , 1-Acylglycerophosphocholine O-Acyltransferase/classification , 1-Acylglycerophosphocholine O-Acyltransferase/metabolism , Acyl Coenzyme A/metabolism , Amino Acid Sequence , Arabidopsis/enzymology , Arabidopsis/genetics , Brassica/enzymology , Brassica/genetics , Ricinus communis/enzymology , Ricinus communis/genetics , Enzyme Assays , Fatty Acids/metabolism , Kinetics , Molecular Sequence Data , Phylogeny , Plant Proteins/classification , Plant Proteins/metabolism , Recombinant Proteins/classification , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Sequence Homology, Amino Acid , Substrate Specificity
13.
Biochemistry ; 52(11): 1980-9, 2013 Mar 19.
Article in English | MEDLINE | ID: mdl-23439010

ABSTRACT

Glutathione S-transferase, from the malarial parasite Plasmodium falciparum (PfGST), exerts a protective role in the organism and is thus considered an interesting target for antimalarial drug development. In contrast to other GSTs, it is present in solution as a tetramer and a dimer in equilibrium, which is induced by glutathione (GSH). These properties prevent a calorimetric titration from being conducted upon binding of ligands to this protein's G-site. Thermodynamic characterization can be an optimal strategy for antimalarial drug development, and isothermal titration calorimetry (ITC) is the only technique that allows the separation of the binding energy into both enthalpic and entropic contributions. This information facilitates an understanding of the changes in the drugs' substituents, improving their affinity and specificity. In this study, we have applied a nontypical ITC procedure, based on the dissociation of the ligand-protein complex, to calorimetrically study the binding of the GSH substrate, and the glutathione sulfonate competitive inhibitor, to dimeric PfGST over a temperature range of 15-37 °C. The optimal experimental conditions for applying this procedure have been optimized by studying the dimer to tetramer conversion using size exclusion chromatography. The binding of these ligands to dimeric PfGST is noncooperative, the affinity of glutathione sulfonate being approximately 2 orders of magnitude higher than that of its natural substrate GSH. The binding of both ligands is enthalpically favorable and entropically unfavorable at all the studied temperatures. These results demonstrate that, although PfGST presents differences when compared to other known GSTs, these ligands bind to its dimeric form with a similar affinity and energetic balance. However, in contrast to that of other GSTs, the binding of GSH to protein, in the absence of the ligand, is slow.


Subject(s)
Glutathione Transferase/metabolism , Glutathione/analogs & derivatives , Glutathione/metabolism , Plasmodium falciparum/enzymology , Calorimetry , Drug Discovery , Humans , Ligands , Malaria, Falciparum/drug therapy , Malaria, Falciparum/parasitology , Plasmodium falciparum/metabolism , Protein Binding , Protein Multimerization , Thermodynamics
14.
Plant Sci ; 199-200: 29-40, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23265316

ABSTRACT

The multigene family encoding proteins related to lysophosphatidyl-acyltransferases (LPATs) has been analyzed in the castor plant Ricinus communis. Among them, two genes designated RcLPAT2 and RcLPATB, encoding proteins with LPAT activity and expressed in the developing seed, have been cloned and characterized in some detail. RcLPAT2 groups with well characterized members of the so-called A-class LPATs and it shows a generalized expression pattern in the plant and along seed development. Enzymatic assays of RcLPAT2 indicate a preference for ricinoleoyl-CoA over other fatty acid thioesters when ricinoleoyl-LPA is used as the acyl acceptor, while oleoyl-CoA is the preferred substrate when oleoyl-LPA is employed. RcLPATB groups with B-class LPAT enzymes described as seed specific and selective for unusual fatty acids. However, RcLPATB exhibit a broad specificity on the acyl-CoAs, with saturated fatty acids (12:0-16:0) being the preferred substrates. RcLPATB is upregulated coinciding with seed triacylglycerol accumulation, but its expression is not restricted to the seed. These results are discussed in the light of a possible role for LPAT isoenzymes in the channelling of ricinoleic acid into castor bean triacylglycerol.


Subject(s)
Acyltransferases/genetics , Genome, Plant/genetics , Ricinus communis/enzymology , Ricinus/enzymology , Seeds/enzymology , Acyl Coenzyme A/metabolism , Acyltransferases/metabolism , Base Sequence , Ricinus communis/genetics , Ricinus communis/growth & development , Castor Oil/metabolism , Cloning, Molecular , Escherichia coli/genetics , Escherichia coli/metabolism , Fatty Acids/metabolism , Flowers/enzymology , Flowers/genetics , Flowers/metabolism , Gene Expression Regulation, Plant , Molecular Sequence Data , Multigene Family , Mutation , Plant Leaves/enzymology , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/enzymology , Plant Roots/genetics , Plant Roots/metabolism , Plant Stems/enzymology , Plant Stems/genetics , Plant Stems/metabolism , Plants, Genetically Modified , Ricinoleic Acids/metabolism , Ricinus/genetics , Ricinus/metabolism , Seeds/genetics , Seeds/growth & development , Sequence Analysis, DNA , Substrate Specificity , Triglycerides/metabolism , Up-Regulation
15.
Bioorg Med Chem Lett ; 22(23): 7256-60, 2012 Dec 01.
Article in English | MEDLINE | ID: mdl-23072868

ABSTRACT

The inhibitory and sensor properties of two ferrocene conjugates, in which the ferrocene and glutathione are linked through a spacer arm of different length and chemical structure, on human Pi glutathione S-transferase, were examined by activity assays, ITC, fluorescence spectroscopy and voltammetry. Such ferrocene conjugates are strong competitive inhibitors of this enzyme with an enhanced binding affinity, the one bearing the longest spacer arm being the most potent inhibitor. Voltammetric measurements showed a strong decrease of the peak current intensity and an increase of the oxidation potential upon binding of ferrocene-glutathione conjugates to GST P1-1 showing that both conjugates can be used as dual electrochemical sensors for GST P1-1.


Subject(s)
Enzyme Inhibitors/chemistry , Ferrous Compounds/chemistry , Glutathione S-Transferase pi/antagonists & inhibitors , Calorimetry , Electrochemical Techniques , Enzyme Inhibitors/chemical synthesis , Glutathione/chemistry , Glutathione S-Transferase pi/metabolism , Humans , Kinetics , Metallocenes , Oxidation-Reduction , Protein Binding , Thermodynamics
16.
Biochimie ; 94(2): 541-50, 2012 Feb.
Article in English | MEDLINE | ID: mdl-21946232

ABSTRACT

The binding properties of two electroactive glutathione-ferrocene conjugates that consist in glutathione attached to one or both of the cyclopentadienyl rings of ferrocene (GSFc and GSFcSG), to Schistosoma japonica glutathione S-transferase (SjGST) were studied by spectroscopy fluorescence, isothermal titration calorimetry (ITC) and differential pulse voltammetry (DPV). Such ferrocene conjugates resulted to be competitive inhibitors of glutathione S-transferase with an increased binding affinity relative to the natural substrate glutathione (GSH). We found that the conjugate having two glutathione units (GSFcSG) exhibits an affinity for SjGST approximately two orders of magnitude higher than GSH. Furthermore, it shows negative cooperativity with the affinity for the second binding site two orders of magnitude lower than that for the first one. We propose that the reason for such negative cooperativity is steric since, i) the obtained thermodynamic parameters do not indicate profound conformational changes upon GSFcSG binding and ii) docking studies have shown that, when bound, part of the first bound ligand invades the second site due to its large size. In addition, voltammetric measurements show a strong decrease of the peak current upon binding of ferrocene-glutathione conjugates to SjGST and provide very similar K values than those obtained by ITC. Moreover, the sensing ability, expressed by the sensitivity parameter shows that GSFcSG is much more sensitive than GSFc, for the detection of SjGST.


Subject(s)
Biosensing Techniques/methods , Enzyme Inhibitors/metabolism , Ferrous Compounds/chemistry , Glutathione Transferase/antagonists & inhibitors , Glutathione/chemistry , Helminth Proteins/antagonists & inhibitors , Schistosoma japonicum/enzymology , Animals , Binding Sites , Calorimetry , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Glutathione Transferase/analysis , Glutathione Transferase/metabolism , Helminth Proteins/analysis , Helminth Proteins/metabolism , Metallocenes , Models, Molecular , Potentiometry , Protein Binding , Spectrometry, Fluorescence , Thermodynamics
17.
Planta ; 232(4): 987-97, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20658148

ABSTRACT

The glycerol-based lipid polyester called cutin is a main component of cuticle, the protective interface of aerial plant organs also controlling compound exchange with the environment. Though recent progress towards understanding of cutin biosynthesis has been made in Arabidopsis thaliana, little is known in other plants. One key step in this process is the acyl transfer reaction to the glycerol backbone. Here we report the cloning and molecular characterization of EpGPAT1, a gene encoding a glycerol-3-phosphate O-acyltransferase (GPAT) from Echium pitardii (Boraginaceae) with high similarity to the AtGPAT4/AtGPAT8 of Arabidopsis. Quantitative analysis by qRT-PCR showed highest expression of EpGPAT1 in seeds, roots, young leaves and flowers. Acyltransferase activity of EpGPAT1 was evidenced by heterologous expression in yeast. Ectopic expression in leaves of tobacco plants lead to an increase of C16 and C18 hydroxyacids and alpha,omega-diacids in the cell wall fraction, indicating a role in the biosynthesis of polyesters. Analysis of the genomic organization in Echium revealed the presence of EpGPAT2, a closely related gene which was found to be mostly expressed in developing leaves and flowers. The presence of a conserved HAD-like domain at the N-terminal moiety of GPATs from Echium, Arabidopsis and other plant species suggests a possible phosphohydrolase activity in addition to the reported acyltransferase activity. Evolutive implications of this finding are discussed.


Subject(s)
Echium/enzymology , Echium/metabolism , Glycerol-3-Phosphate O-Acyltransferase/metabolism , Membrane Lipids/metabolism , Polyesters/metabolism , Blotting, Southern , Echium/genetics , Glycerol-3-Phosphate O-Acyltransferase/genetics , Polymerase Chain Reaction
18.
J Plant Physiol ; 167(13): 1101-8, 2010 Sep 01.
Article in English | MEDLINE | ID: mdl-20462657

ABSTRACT

GMCP3 encodes a cystein proteinase of Glycine max belonging to the papain-like family (C1A in MEROPS database) that was previously found to be involved in the mobilization of protein reserves during seed germination. Here, we report that GMCP3 is induced by senescence and diverse stresses in non-seed tissues, thus indicating a more general function in plants. Cladistic analysis of papain-like proteins of plants indicated that GMCP3, along with related proteases of other species, belongs to a distinct new group within the C1A family, which can also be distinguished by the four-exon structure of the gene. We also describe the genomic organization of GMCP3 revealing the presence of two closely related copies that are transcriptionally regulated in a similar way, although only one appears to be functional.


Subject(s)
Cellular Senescence , Cysteine Proteases/metabolism , Glycine max/cytology , Glycine max/enzymology , Papain/metabolism , Stress, Physiological , Acetates/pharmacology , Amino Acid Sequence , Base Sequence , Cellular Senescence/drug effects , Cellular Senescence/genetics , Cyclopentanes/pharmacology , Cysteine Proteases/chemistry , Cysteine Proteases/genetics , Gene Expression Profiling , Gene Expression Regulation, Enzymologic/drug effects , Gene Expression Regulation, Plant/drug effects , Genes, Plant/genetics , Glucuronidase/metabolism , Molecular Sequence Data , Organ Specificity/drug effects , Organ Specificity/genetics , Oxylipins/pharmacology , Papain/genetics , Phylogeny , Plants, Genetically Modified , RNA, Plant/genetics , Seeds/drug effects , Seeds/enzymology , Seeds/genetics , Glycine max/drug effects , Glycine max/genetics , Stress, Physiological/drug effects , Stress, Physiological/genetics , Nicotiana/drug effects , Nicotiana/genetics
19.
J Agric Food Chem ; 58(1): 272-81, 2010 Jan 13.
Article in English | MEDLINE | ID: mdl-19908832

ABSTRACT

The 11S globulin (legumin) gene family has been characterized in the castor plant Ricinus communis L. Phylogenetic analysis reveals the presence of two diverged subfamilies (RcLEG1 and RcLEG2) comprising a total of nine genes and two putative pseudogenes. The expression of castor legumin genes has been studied, indicating that it is seed specific and developmentally regulated, with a maximum at the stage when cellular endosperm reaches its full expansion (around 40-45 DAP). However, conspicuous differences are appreciated in the expression timing of individual genes. A characterization of the 5'-proximal regulatory regions for two genes, RcLEG1-1 and RcLEG2-1, representative of the two legumin subfamilies, has also been performed by fusion to the GUS reporter gene. The results obtained from heterologous expression in tobacco and transient expression in castor, indicating seed-specific regulation, support the possible utility of these promoters for biotechnological purposes.


Subject(s)
Globulins/genetics , Multigene Family , Plant Proteins/genetics , Ricinus/genetics , Amino Acid Sequence , Gene Expression Regulation, Plant , Globulins/chemistry , Globulins/metabolism , Molecular Sequence Data , Phylogeny , Plant Proteins/chemistry , Plant Proteins/metabolism , Ricinus/chemistry , Ricinus/classification , Ricinus/metabolism , Sequence Alignment
20.
J Plant Physiol ; 166(16): 1745-54, 2009 Nov 01.
Article in English | MEDLINE | ID: mdl-19524320

ABSTRACT

This paper describes the cloning of the ornithine decarboxylase gene from a red seaweed, Grateloupia imbricata (Rhodophyta), the characterization of its expression throughout the reproductive process, and demonstrates how polyamines are involved in seaweed reproduction. In addition, the data indicate that the basal perennial and non-spore-forming thalli behave physiologically and genetically differently from the distal reproductive tissue. The common polyamines putrescine, spermidine and spermine have been associated with carposporogenesis in red seaweeds. Ornithine decarboxylase (ODC, EC 4.1.1.17) produces the diamine putrescine from the non-protein amino acid, ornithine. ODC is predominant in the synthesis of polyamines in G. imbricata. The gene encoding the ornithine decarboxylase in G. imbricata was cloned by genomic polymerase chain reaction (PCR) using degenerate primers against conserved motives, followed by chromosome walking using inverse PCR (iPCR). The encoded protein (GiODC, accession # FJ223132) was very similar to other ODCs, bearing the characteristic conserved domain of pyridoxal-dependent decarboxylases. The expression of the GiODC gene was investigated by real-time PCR and in situ hybridization (ISH), and was observed to vary according to cystocarp differentiation. It was weakly transcribed in apical parts of fertile tissue where the cystocarps are located, while the transcript levels were comparatively high in the basal part. This expression pattern correlated with the levels of free polyamines, which were higher at the basal part.


Subject(s)
Gene Expression Regulation, Plant , Genes, Plant , Ornithine Decarboxylase/genetics , Seaweed/enzymology , Amino Acid Sequence , Base Sequence , Biogenic Polyamines/metabolism , Cloning, Molecular , DNA Primers , Molecular Sequence Data , Ornithine Decarboxylase/chemistry , Polymerase Chain Reaction , Sequence Homology, Amino Acid
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