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1.
Annu Int Conf IEEE Eng Med Biol Soc ; 2022: 337-341, 2022 07.
Article in English | MEDLINE | ID: mdl-36086541

ABSTRACT

Resting-state fMRI is commonly used for diagnosing Autism Spectrum Disorder (ASD) by using network-based functional connectivity. It has been shown that ASD is associated with brain regions and their inter-connections. However, discriminating based on connectivity patterns among imaging data of the control population and that of ASD patients' brains is a non-trivial task. In order to tackle said classification task, we propose a novel deep learning architecture (MHATC) consisting of multi-head attention and temporal consolidation modules for classifying an individual as a patient of ASD. The devised architecture results from an in-depth analysis of the limitations of current deep neural network solutions for similar applications. Our approach is not only robust but computationally efficient, which can allow its adoption in a variety of other research and clinical settings.


Subject(s)
Autism Spectrum Disorder , Attention , Autism Spectrum Disorder/diagnostic imaging , Brain , Brain Mapping/methods , Humans , Magnetic Resonance Imaging/methods
2.
Cell Rep Med ; 2(5): 100267, 2021 05 18.
Article in English | MEDLINE | ID: mdl-34095877

ABSTRACT

The lack of effective treatment options for advanced non-clear cell renal cell carcinoma (NCCRCC) is a critical unmet clinical need. Applying a high-throughput drug screen to multiple human kidney cancer cells, we identify the combination of the VEGFR-MET inhibitor cabozantinib and the SRC inhibitor dasatinib acts synergistically in cells to markedly reduce cell viability. Importantly, the combination is well tolerated and causes tumor regression in vivo. Transcriptional and phosphoproteomic profiling reveals that the combination converges to downregulate the MAPK-ERK signaling pathway, a result not predicted by single-agent analysis alone. Correspondingly, the addition of a MEK inhibitor synergizes with either dasatinib or cabozantinib to increase its efficacy. This study, by using approved, clinically relevant drugs, provides the rationale for the design of effective combination treatments in NCCRCC that can be rapidly translated to the clinic.


Subject(s)
Anilides/pharmacology , Carcinoma, Renal Cell/drug therapy , Dasatinib/pharmacology , Pyridines/pharmacology , Antineoplastic Combined Chemotherapy Protocols/pharmacology , Cell Line, Tumor , Humans , Kidney Neoplasms/drug therapy , Protein Kinase Inhibitors/administration & dosage , Signal Transduction/drug effects , src-Family Kinases/metabolism
3.
Genes Dev ; 31(20): 2067-2084, 2017 10 15.
Article in English | MEDLINE | ID: mdl-29138276

ABSTRACT

There is limited knowledge about the metabolic reprogramming induced by cancer therapies and how this contributes to therapeutic resistance. Here we show that although inhibition of PI3K-AKT-mTOR signaling markedly decreased glycolysis and restrained tumor growth, these signaling and metabolic restrictions triggered autophagy, which supplied the metabolites required for the maintenance of mitochondrial respiration and redox homeostasis. Specifically, we found that survival of cancer cells was critically dependent on phospholipase A2 (PLA2) to mobilize lysophospholipids and free fatty acids to sustain fatty acid oxidation and oxidative phosphorylation. Consistent with this, we observed significantly increased lipid droplets, with subsequent mobilization to mitochondria. These changes were abrogated in cells deficient for the essential autophagy gene ATG5 Accordingly, inhibition of PLA2 significantly decreased lipid droplets, decreased oxidative phosphorylation, and increased apoptosis. Together, these results describe how treatment-induced autophagy provides nutrients for cancer cell survival and identifies novel cotreatment strategies to override this survival advantage.


Subject(s)
Antineoplastic Agents/pharmacology , Neoplasms/metabolism , Signal Transduction/drug effects , Animals , Apoptosis , Autophagy , Benzamides/pharmacology , Cell Line, Tumor , Cell Respiration/drug effects , Cell Survival , Heterocyclic Compounds, 3-Ring/pharmacology , Humans , Lipid Droplets/metabolism , Mice , Mitochondria/drug effects , Mitochondria/metabolism , Neoplasms/enzymology , Neoplasms/pathology , Phosphatidylinositol 3-Kinases/metabolism , Phosphoinositide-3 Kinase Inhibitors , Phospholipase A2 Inhibitors/pharmacology , Phospholipids/metabolism , Protein Kinase Inhibitors/pharmacology , Proto-Oncogene Proteins c-akt/antagonists & inhibitors , Proto-Oncogene Proteins c-akt/metabolism , Pyrimidines/pharmacology , Tumor Cells, Cultured
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