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Nucleic Acids Res ; 42(Database issue): D1245-52, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24136998

ABSTRACT

Soybean Knowledge Base (http://soykb.org) is a comprehensive web resource developed for bridging soybean translational genomics and molecular breeding research. It provides information for six entities including genes/proteins, microRNAs/sRNAs, metabolites, single nucleotide polymorphisms, plant introduction lines and traits. It also incorporates many multi-omics datasets including transcriptomics, proteomics, metabolomics and molecular breeding data, such as quantitative trait loci, traits and germplasm information. Soybean Knowledge Base has a new suite of tools such as In Silico Breeding Program for soybean breeding, which includes a graphical chromosome visualizer for ease of navigation. It integrates quantitative trait loci, traits and germplasm information along with genomic variation data, such as single nucleotide polymorphisms, insertions, deletions and genome-wide association studies data, from multiple soybean cultivars and Glycine soja.


Subject(s)
Breeding , Databases, Genetic , Genome, Plant , Glycine max/genetics , DNA Methylation , Genes, Plant , Genomics , Internet , Knowledge Bases , Mutation , Phosphorylation , Plant Proteins/chemistry , Quantitative Trait Loci , Software , Glycine max/metabolism , Systems Integration
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