Rhizodeposition shapes rhizosphere microbial community structure in organic soil.

The aims of the study were to determine group specificity in microbial utilization of root-exudate compounds and whole rhizodeposition; quantify the proportions of carbon acquired by microbial groups from soil organic matter and rhizodeposition, respectively; and assess the importance of root-derived C as a driver of soil microbial community structure. Additions of 13C-labelled root-exudate compounds to organic soil and steady-state labelling of Lolium perenne, coupled to compound-specific isotope ratio mass spectrometry, were used to quantify group-specific microbial utilization of rhizodeposition. Microbial utilization of glucose and fumaric acid was widespread through the microbial community, but glycine was utilized by a narrower range of populations, as indicated by the enrichment of phospholipid fatty acid (PLFA) analysis fractions. In L. perenne rhizospheres, high rates of rhizodeposit utilization by microbial groups showed good correspondence with increased abundance of these groups in the rhizosphere. Although rhizodeposition was not the quantitatively dominant C source for microbes in L. perenne rhizospheres, relative utilization of this C source was an important driver of microbial group abundance in organic soil.

Collection and storage of CO2 for 13C analysis: An application to separate soil CO2 efflux into root- and soil-derived components.

Soil surface CO2 efflux is comprised of CO2 from (i) root respiration and rhizosphere microbes and (ii) heterotrophic respiration from the breakdown of soil organic matter (SOM). This efflux may be partitioned between these sources using delta13C measurements. To achieve this, continuous flow isotope ratio mass spectrometry can be used and, in conjunction with 10 mL septum-capped vials, large numbers of samples may be analysed using a Finnigan MAT Delta(plus)XP interfaced to a Gas Bench II. Here we describe a number of advances to facilitate such work, including: (i) a technique for monitoring mass spectrometer performance, (ii) improvements to sample storage, and (iii) a gas-handling system for incubating and sampling the CO2 derived from roots and soils. Mass spectrometer performance was monitored using an automated refillable vial. Compressed air analysed with this system had mean delta13C of -9.61 +/- 0.16 per thousand (+/- 1sigma, n = 28) collected over four runs. Heating the butyl rubber septa used to seal the vials at 105 degrees C for 12 h improved the sample storage. After air transportation over 12 days, the isotope composition of the CO2 at ambient concentrations was unchanged (before: -35.2 +/- 0.10 per thousand, n = 4; after: -35.3 +/- 0.10 per thousand, n = 15); without heat treatment of the septa the CO2 became slightly enriched (-35.0 +/- 0.14 per thousand, n = 15). The linearity of the Gas Bench II was found to decline above 8000 micromol CO2 mol(-1). To stay within a linear range and to allow the incubation of soil and root material we describe a gas-handling system based around a peristaltic pump. Finally, we demonstrate these methods by growing a C-4 grass (Guinea grass, Panicum maximum Jacq.) in a C-3 soil. Root respiration was found to contribute between 5 and 22% to the soil surface CO2 efflux. These methodologies will facilitate experiments aimed at measuring the isotopic composition of soil-derived CO2 across a range of ecological applications.

The enclosed and exposed part of the peduncle of wheat (Triticum aestivum) - spatial separation of fructan storage.

• Although fructan accumulation is reported in photosynthetically active organs, the long-term storage of fructan mainly occurs in more heterotrophic tissues. Significant amounts of fructan are stored in the internodes during grain filling of wheat (Triticum aestivum). The uppermost internode (peduncle) of wheat consists of a lower unexposed (i.e. enclosed by the flag leaf sheath and thus heterotrophic part, Pl ) and an upper exposed autotrophic part (Pu ). • Diurnal and long-term changes of fructan and sucrose (the precursor of fructan synthesis) contents were studied in Pl and Pu of potted wheat plants. • At mid grain-filling the sucrose concentration in Pu increased almost threefold during the light period and decreased in the following night. Diurnal changes in sucrose concentration were much less expressed in Pl . Fructan concentration was significantly higher in Pl than in Pu and did not change during the light period. • In another experiment, field grown wheat plants were sampled at regular intervals between 5 d before anthesis and grain maturity. At the time of maximum fructan content, 88% of the fructans in the total peduncle were stored in the heterotrophic Pl . Within Pl , fructan accumulation started in the older segments. The reason for the sharp separation of fructan storage between Pl and Pu remains unclear.