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1.
J Appl Microbiol ; 116(6): 1553-62, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24905218

ABSTRACT

AIMS: Assays to detect Pantoea stewartii from maize seeds should include differentiation of P. stewartii subsp. stewartii and P. stewartii subsp. indologenes. METHODS AND RESULTS: Previously published PCR primers for the identification of P. stewartii subsp. stewartii amplified signals from both subspecies using both conventional and quantitative PCR. In MALDI-TOF mass spectroscopy analysis with the Biotyper software (Bruker), subspecies stewartii and indologenes produced identical score values. Analysis against the Biotyper database produced similar score values for both subspecies. From the subtyping methods provided by the Biotyper software, only composite correlation indexing (CCI) separated both groups. By alignment of 16S rRNA sequences, no subspecies distinction was possible. To develop new techniques for the separation of these subspecies, the partial sequences of several housekeeping genes were compared. The type strains of the two subspecies showed characteristic single-nucleotide polymorphisms (SNPs) in the genes galE, glmS and recA. Other reference strains of P. stewartii subsp. stewartii followed the same nucleotide pattern, whereas known P. stewartii subsp. indologenes strains were different. Based on single-nucleotide polymorphisms in galE and recA, PCR primers were created to separate the subspecies by stepdown PCR analysis. Two putative P. stewartii strains were isolated from imported maize seeds. They were not virulent on maize seedlings, were positive in the indole assay with Kovacs reagent and identified as P. stewartii subsp. indologenes. The subspecies-specific PCR primers confirmed they were subspecies indologenes. CONCLUSIONS: By stepdown PCR, P. stewartii subsp. indologenes can be differentiated from P. stewartii subsp. stewartii. SIGNIFICANCE AND IMPACT OF THE STUDY: A possible detection of P. stewartii subsp. stewartii, the causative agent of Stewart's wilt of maize, in plant material by immunological or molecular assays must exclude contamination with P. stewartii subsp. indologenes, which would create false positives in seed tests and affect quarantine measurements.


Subject(s)
Pantoea/classification , Seeds/microbiology , Zea mays/microbiology , Bacterial Typing Techniques , Base Sequence , DNA Primers/genetics , Genes, Bacterial , Molecular Sequence Data , Pantoea/genetics , Pantoea/isolation & purification , Plant Diseases/microbiology , Polymerase Chain Reaction , Polymorphism, Single Nucleotide , RNA, Ribosomal, 16S/genetics , Sequence Alignment , Species Specificity , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
2.
Mol Genet Genomics ; 289(2): 215-23, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24374865

ABSTRACT

We identified a compound in culture supernatants of Erwinia species, such as Erwinia amylovora, E. pyrifoliae, E. billingiae, E. tasmaniensis, E. persicina and E. rhapontici absorbing at 340 nm, which was associated before with the yellow pigment produced by E. amylovora on media containing copper ions. The compound was purified from E. tasmaniensis strain Et1/99 supernatants by chromatography on Dowex-1 and Dowex-50 columns and identified by HPLC/MS and NMR analysis as 6-thioguanine (6TG). Its signal at 167 Da matched with the expected molecular mass. By random mutagenesis with miniTn5, we obtained mutants defective in the genes for pyrimidine and purine metabolism. A specific gene cluster with ycf genes described by us before, absent in the corresponding region of Escherichia coli, was identified in the genome sequence of three Erwinia species and named tgs region for thioguanine synthesis. Clones of the tgs gene cluster promoted 6TG synthesis and secretion in E. coli, when the bacteria were grown in minimal medium supplemented with amino acids. 6TG was bacteriostatic for E. coli and Salmonella typhimurium strains, with cell growth resumed after prolonged incubation. Similar results were obtained with P. agglomerans strains. Bacteria from the genus Pectobacterium were barely and Rahnella or Gibbsiella species were not inhibited by 6TG. Adenine and guanine relieved the toxic effect of 6TG on E. coli. Non-producing strains were fully virulent on host plants. 6TG synthesis may help erwinias to interfere with growth of some microorganisms in the environment.


Subject(s)
Bacterial Proteins/genetics , Erwinia/metabolism , Escherichia coli Infections/microbiology , Escherichia coli/growth & development , Malus/microbiology , Plant Diseases/microbiology , Thioguanine/metabolism , Erwinia/classification , Erwinia/genetics , Escherichia coli/pathogenicity , Escherichia coli Infections/genetics , Magnetic Resonance Spectroscopy , Malus/genetics , Multigene Family , Mutation/genetics , Plant Diseases/genetics , Virulence
3.
Curr Microbiol ; 65(1): 73-84, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22538467

ABSTRACT

Fire blight has spread from North America to New Zealand, Europe, and the Mediterranean region. We were able to differentiate strains from various origins with a novel PCR method. Three Single Nucleotide Polymorphisms (SNPs) in the Erwinia amylovora genome were characteristic of isolates from North America and could distinguish them from isolates from other parts of the world. They were derived from the galE, acrB, and hrpA genes of strains Ea273 and Ea1/79. These genes were analyzed by conventional PCR (cPCR) and quantitative PCR (qPCR) with differential primer annealing temperatures. North-American E. amylovora strains were further differentiated according to their production of L: -2,5-dihydrophenylalanine (DHP) as tested by growth inhibition of the yeast Rhodotorula glutinis. E. amylovora fruit tree (Maloideae) and raspberry (rubus) strains were also differentiated by Single Strand Conformational Polymorphism analysis. Strains from the related species Erwinia pyrifoliae isolated in Korea and Japan were all DHP positive, but were differentiated from each other by SNPs in the galE gene. Differential PCR is a rapid and simple method to distinguish E. amylovora as well as E. pyrifoliae strains according to their geographical origin.


Subject(s)
Bacterial Typing Techniques/methods , Erwinia amylovora/genetics , Erwinia/genetics , Erwinia/metabolism , Phenylalanine/analogs & derivatives , Plant Diseases/microbiology , Polymerase Chain Reaction/methods , Polymorphism, Single Nucleotide , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Base Sequence , Cyclohexenes , Erwinia/isolation & purification , Erwinia amylovora/isolation & purification , Erwinia amylovora/metabolism , Molecular Sequence Data , Phenylalanine/biosynthesis , Phylogeny , Plants/microbiology
4.
J Microbiol Methods ; 89(1): 57-62, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22330936

ABSTRACT

Many pathogenic and epiphytic bacteria isolated from apples and pears belong to the genus Erwinia; these include the species E. amylovora, E. pyrifoliae, E. billingiae, E. persicina, E. rhapontici and E. tasmaniensis. Identification and classification of freshly isolated bacterial species often requires tedious taxonomic procedures. To facilitate routine identification of Erwinia species, we have developed a PCR method based on species-specific oligonucleotides (SSOs) from the sequences of the housekeeping genes recA and gpd. Using species-specific primers that we report here, differentiation was done with conventional PCR (cPCR) and quantitative PCR (qPCR) applying two consecutive primer annealing temperatures. The specificity of the primers depends on terminal Single Nucleotide Polymorphisms (SNPs) that are characteristic for the target species. These PCR assays enabled us to distinguish eight Erwinia species, as well as to identify new Erwinia isolates from plant surfaces. When performed with mixed bacterial cultures, they only detected a single target species. This method is a novel approach to classify strains within the genus Erwinia by PCR and it can be used to confirm other diagnostic data, especially when specific PCR detection methods are not already available. The method may be applied to classify species within other bacterial genera.


Subject(s)
Bacteriological Techniques/methods , Erwinia/classification , Erwinia/isolation & purification , Malus/microbiology , Polymerase Chain Reaction/methods , Pyrus/microbiology , DNA Primers/genetics , Erwinia/genetics , Glucosephosphate Dehydrogenase/genetics , Polymorphism, Single Nucleotide , Rec A Recombinases/genetics , Temperature
5.
J Appl Microbiol ; 112(1): 147-58, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21973322

ABSTRACT

AIMS: To detect the apple and pear pathogens Erwinia amylovora and Erwinia pyrifoliae as well as the related epiphytes Erwinia tasmaniensis and Erwinia billingiae, we created novel PCR primers and also applied them to a series of other plant-associated bacteria as control. To facilitate fast diagnosis, we used matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOF MS). METHODS AND RESULTS: The PCR primers were deduced from the pstS-glmS regions, which can include the gene for levansucrase, and also from regions encoding capsular polysaccharide synthesis. All primer combinations were specific for their associated Erwinia species to detect them with conventional PCR, also in mixed cultures from necrotic plant tissue. Other primers designed for quantitative PCR with SYBR Green or together with TaqMan probes were applied for real-time detection to determine growth of Erw. amylovora, Erw. billingiae, Erw. pyrifoliae and Erw. tasmaniensis in apple blossoms. From whole-cell protein extracts, profiles were generated using a Bruker microflex machine and Erwinia strains classified according to a score scheme. CONCLUSIONS: The designed PCR primers identified the Erwinia species unambiguously and can be applied to qualitative and quantitative tests. MALDI-TOF MS data were in agreement with the PCR assays. SIGNIFICANCE AND IMPACT OF THE STUDY: The applied diagnosis methods allow fast and precise monitoring of two pathogenic and two epiphytic Erwinia species. They are valuable for population studies with apple and pear flowers and with diseased plant material.


Subject(s)
Agriculture/methods , Erwinia/physiology , Flowers/microbiology , Malus/microbiology , Mass Spectrometry , Polymerase Chain Reaction , Pyrus/microbiology , DNA Primers , Erwinia/genetics , Erwinia/isolation & purification , Molecular Sequence Data
6.
J Bacteriol ; 193(3): 795-6, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21097611

ABSTRACT

Fire blight, a plant disease of economic importance caused by Erwinia amylovora, may be controlled by the application of bacteriophages. Here, we provide the complete genome sequences and the annotation of three E. amylovora-specific phages isolated in North America and genomic information about a bacteriophage induced by mitomycin C treatment of an Erwinia tasmaniensis strain that is antagonistic for E. amylovora. The American phages resemble two already-described viral genomes, whereas the E. tasmaniensis phage displays a singular genomic sequence in BLAST searches.


Subject(s)
Bacteriophages/genetics , DNA, Viral/chemistry , DNA, Viral/genetics , Erwinia/virology , Genome, Viral , Bacteriophages/isolation & purification , Erwinia/drug effects , Mitomycin/metabolism , Molecular Sequence Data , North America , Sequence Analysis, DNA , Virus Activation
7.
Lett Appl Microbiol ; 48(3): 324-30, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19187512

ABSTRACT

AIMS: Bacterial shoot blight of pear in Japan (BSBP) is caused by Erwinia strains which were formerly associated with the species Erwinia amylovora, the causative agent of fire blight. The description of Erwinia pyrifoliae as a pear pathogen in Korea renewed a possible connection of the pear pathogens in both countries. METHODS AND RESULTS: Nucleotide sequence analysis of the 16S rRNA, the house keeping genes gpd and recA, as well as DNA-DNA hybridization kinetics and microbiological assays place the pear pathogens from Japan into the species E. pyrifoliae described as the causative agent of Asian pear blight in Korea. CONCLUSIONS: Erwinia pyrifoliae strains from Korea and the pear pathogenic Erwinia strains from Japan belong taxonomically into the same species, but show slight divergences in nucleotide sequences used for classification. The allocation is not only supported by microbiological properties, but also by a host range restricted to pear observed before by others. SIGNIFICANCE AND IMPACT OF THE STUDY: The data suggest that the BSBP disease observed at the island of Hokkaido was not fire blight and unify BSBP in Japan with the pear pathogenic species E. pyrifoliae from Korea.


Subject(s)
Erwinia , Glucosephosphate Dehydrogenase/genetics , Plant Diseases/microbiology , Pyrus/microbiology , RNA, Ribosomal, 16S/genetics , Rec A Recombinases/genetics , DNA, Bacterial/analysis , DNA, Bacterial/genetics , Erwinia/classification , Erwinia/genetics , Erwinia/isolation & purification , Erwinia/pathogenicity , Japan , Molecular Sequence Data , Nucleic Acid Hybridization , Phylogeny , Sequence Analysis, DNA
8.
Mol Genet Genomics ; 275(3): 310-9, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16404571

ABSTRACT

The small basic histone-like protein H-NS is known for bacteria to attenuate virulence of several animal pathogens. An hns homologue from E. amylovora was identified by complementing an E. coli hns-mutant strain with a cosmid library from E. amylovora. A 1.6 kb EcoRI-fragment complemented the mucoid phenotype and repressed the ss-glucosidase activity of E. coli PD32. The open reading frame encoding an H-NS-like protein of 134 amino acid was later shown to be located on plasmid pEA29 (McGhee and Jones 2000). A chromosomal hns gene was amplified with PCR consensus primers and localized near galU of E. amylovora. E. amylovora mutants were created by insertion of a resistance cassette, and the intact gene was inserted into a high copy number plasmid for constitutive expression. Purified chromosomal H-NS protein preferentially bound to a DNA fragment from the lsc region and bending was predicted for an adjacent fragment with the rlsB-promoter. Levan production was significantly increased by hns mutations. Synthesis of the capsular exopolysaccharide amylovoran and of levan were reduced, when hns from the E. amylovora plasmid was overexpressed. A mutation in chromosomal hns of E. amylovora increased amylovoran synthesis, and both mutations retarded symptom formation on immature pears.


Subject(s)
Erwinia amylovora/genetics , Genes, Bacterial , Base Sequence , DNA Primers , DNA, Bacterial , Electrophoretic Mobility Shift Assay , Erwinia amylovora/pathogenicity , Mutagenesis, Site-Directed , Polymerase Chain Reaction , Virulence/genetics
9.
Mol Genet Genomics ; 268(6): 739-49, 2003 Mar.
Article in English | MEDLINE | ID: mdl-12655400

ABSTRACT

An array of short-sequence DNA repeats (SSRs) occurs in the plasmid pEA29 of the fire blight pathogen Erwinia amylovora. A large number of "fruit tree" strains, mainly from Central and Western Europe, were screened for their SSR numbers, and the analyses were extended to five raspberry strains from North America and six pear pathogenic Erwinia strains from Japan. The repeat ATTACAGA present in all E. amylovorastrains was found to be reiterated 3 to 15 times. The Japanese strains contained the major repeat sequence GGATTCTG, which was reiterated 16 to 24 times. ATTACAGG, which resembles the SSR of E. amylovora, was reiterated two or three times. In a novel approach, sequencing gels were used to visualize the rare occurrence of shorter arrays (down to three repeats) in E. amylovoraand the Japanese Erwinia strains. Changes in the repeat numbers in E. amylovora were observed repeatedly when the bacteria had been exposed to stress conditions. The repeat structures of homo- and heteroduplices of PCR-amplified repeats were also analyzed by cleavage of annealed molecules with the single-strand-specific endonuclease from bacteriophage T4. Not only heteroduplexes, but also homoduplexes showed non-matching regions in the SSRs, which could arise from transient formation of loops due to strand slippage during the assays.


Subject(s)
DNA, Bacterial/genetics , Erwinia/genetics , Erwinia/pathogenicity , Fruit/microbiology , Plant Diseases/microbiology , Pyrus/microbiology , Base Sequence , DNA, Bacterial/isolation & purification , Endodeoxyribonucleases , Erwinia/isolation & purification , Europe , Japan , Molecular Sequence Data , Plasmids/genetics , Polymerase Chain Reaction , Repetitive Sequences, Nucleic Acid , Sequence Homology, Nucleic Acid
10.
Microbiology (Reading) ; 147(Pt 11): 2951-9, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11700346

ABSTRACT

Several strains of the genus Erwinia, which were isolated in Japan from pear trees with necrotic symptoms that resembled fire blight, and tentatively identified as Erwinia amylovora, were reinvestigated for their relationship to the fire blight pathogen. These isolates produced ooze on slices of immature pears and were mucoid on MM2Cu agar plates, but did not synthesize levan and did not give the expected PCR signals with several primer pairs specific for Erwinia amylovora. The isolates tested positive with PCR primers designed to detect the novel pear pathogen Erwinia pyrifoliae, which was isolated from Nashi pear trees in South Korea. The nucleotide sequence analysis of a DNA fragment preceding the gene cluster for exopolysaccharide synthesis revealed a closer relationship to Erwinia pyrifoliae than to Erwinia amylovora. Plasmid profiles, protein patterns and genomic DNA analysed by PFGE after XbaI and SpeI digestion were different than Erwinia amylovora. Experiments with strains of Erwinia amylovora isolated from raspberry (Rubus sp.), Erwinia mallotivora and Enterobacter pyrinus also did not reveal a relationship between these bacteria and the Japanese Erwinia strains. The latter are not identical to Erwinia pyrifoliae, but possess many similar features to this pathogen that causes Asian pear blight. It is concluded that pathogenic bacteria isolated in Japan from pear trees with symptoms resembling fire blight are possibly different from Erwinia amylovora.


Subject(s)
Erwinia/classification , Plant Diseases/microbiology , Rosaceae/microbiology , DNA Primers , DNA, Bacterial , Electrophoresis, Gel, Pulsed-Field , Erwinia/genetics , Erwinia/isolation & purification , Erwinia/pathogenicity , Genes, Bacterial , Genetic Variation , Japan , Molecular Sequence Data , Phylogeny , Plasmids , Polymerase Chain Reaction/methods , Polysaccharides, Bacterial/biosynthesis , RNA, Ribosomal, 16S/genetics , Sequence Alignment , Sequence Analysis, DNA
11.
Virus Genes ; 22(1): 73-83, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11210942

ABSTRACT

Transgenic plants, expressing recombinant proteins, are suitable alternatives for the production of relevant immunogens. In the present study, the expression of Puumala virus nucleocapsid protein in tobacco and potato plants (Nicotiana tabacum and Solanum tuberosum) and its immunogenicity was investigated. After infection of leaf discs of SR1 tobacco and tuber discs of potato cv. "Desiree" with the Agrobacterium strain LBA4404 (pAL4404, pBinAR-PUU-S) containing the 1302 bp cDNA sequence of S-RNA segment of a Puumala virus, transgenic tobacco and potato plants expressed the Puumala virus nucleocapsid protein under control of the cauliflower 35S promoter. The recombinant proteins were found to be identical to the authentic Puumala virus nucleocapsid protein as analyzed by immunoblotting. Expression of the nucleocapsid protein was investigated over four plant generations (P to F4) and found to be stable (1 ng/3 microg dried leaf tissue). Transgenic tobacco plants were smaller compared to controls. The transformed potato plants were morphologically similar to control plants and produced tubers as the control potatoes. The S-antigen was expressed at a level of 1 ng protein/5 microg and 1 ng protein/4 microg dried leaf and root tissues, respectively, and remained stable in the first generation of vegetatively propagated potato plants. The immunogenicity of the Puumala virus nucleocapsid protein expressed in Nicotiana tabacum and Solanum tuberosum was investigated in New Zealand white rabbits. They were immunized with leaf extracts from transgenic tobacco and potato plants, and the serum recognized Puumala virus nucleocapsid protein. Transgenic plants expressing hantaviral proteins can thus be used for the development of cost-effective diagnostic systems and for alternative vaccination strategies.


Subject(s)
Nicotiana/metabolism , Nucleocapsid/immunology , Nucleocapsid/metabolism , Orthohantavirus/genetics , Plants, Genetically Modified/metabolism , Plants, Toxic , Solanum tuberosum/metabolism , Animals , Antibodies, Viral/blood , Antibodies, Viral/immunology , Genetic Vectors , Orthohantavirus/metabolism , Immunoblotting , Nucleocapsid/genetics , Nucleocapsid Proteins , Rabbits , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , Solanum tuberosum/genetics , Nicotiana/genetics , Transgenes
12.
Phytopathology ; 91(5): 511-8, 2001 May.
Article in English | MEDLINE | ID: mdl-18943596

ABSTRACT

ABSTRACT The importance of ethylene production for virulence of Pseudomonas syringae pvs. glycinea and phaseolicola was assayed by comparing bacterial multiplication and symptom development in bean and soybean plants inoculated with ethylene-negative (efe) mutants and wild-type strains. The efe mutants of Pseudomonas syringae pv. glycinea were significantly reduced in their ability to grow in planta. However, the degree of reduction was strain-dependent. Population sizes of efe mutant 16/83-E1 that did not produce the phototoxin coronatine were 10- and 15-fold lower than those of the wild-type strain on soybean and on bean, and 16/83-E1 produced very weak symptoms compared with the wild-type strain. The coronatine-producing efe mutant 7a/90-E1 reached fourfold and twofold lower population sizes compared with the wild-type strain on soybean and bean, respectively, and caused disease symptoms typical of the wild-type strain. Experiments with ethylene-insensitive soybeans confirmed these results. The virulence of the wild-type strains was reduced to the same extent in ethylene-insensitive soybean plants as the virulence of the efe mutants in ethylene-susceptible soybeans. In contrast, the virulence of Pseudomonas syringae pv. phaseolicola was not affected by disruption of the efe gene.

13.
Mol Gen Genet ; 264(3): 233-40, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11085262

ABSTRACT

Most Erwinia amylovora strains form yellow mucoid colonies on solid minimal medium containing asparagine and copper sulfate (MM2Cu). One exception is the strain Ea25/82, which produces white colonies on MM2Cu agar. This strain was transformed with a genomic library of E. amylovora and yellow colonies were recovered. A 1.5-kb fragment was found to complement strain Ea25/82 for color formation, and subsequent sequencing revealed two ORFs. The smaller ORF132(ycfB) overlapped with the end of the larger ORF253(ycfA). The putative protein YcfA shows low homology with K+/Na+ channel transporter ATPases. Resistance genes were inserted in both ORFs, and the E. amylovora strains Ea1/79-YA and Ea1/79-YB were created by site-directed mutagenesis. The mutation in ycfB did not affect color formation, whereas the ycfA mutant formed white colonies on MM2Cu. Sequence analysis of the ycf region in strain Ea25/82 revealed a 1-bp alteration in ycfA and no change in ycfB. Stable complementation of Ea25/82 and Ea1/79-YA, however, required both genes. Carotenoids were not detected in E. amylovora grown in the presence of copper ions. On the other hand, copper-independent secretion of a low-molecular-weight compound with an absorption maximum at 340 nm (CP340) was found for strain Ea1/79, but not for Ea25/82 or the mutant Ea1/79-YA. CP340 formed a complex with copper ions, and complementation with plasmids carrying both ycfA and ycfB restored its release from mutant strains. The compound may be connected with the yellow pigment or function in sensing bacterial population densities.


Subject(s)
Copper/pharmacology , Erwinia/genetics , Amino Acid Sequence , Base Sequence , Carotenoids/genetics , Cell Division , Cloning, Molecular , Drug Resistance, Microbial/genetics , Gene Library , Genetic Complementation Test , Ions , Models, Genetic , Molecular Sequence Data , Mutagenesis, Site-Directed , Mutation , Open Reading Frames , Phenotype , Plasmids/genetics , Plasmids/metabolism , Sequence Analysis, DNA , Sodium-Potassium-Exchanging ATPase/genetics , Transformation, Genetic
14.
J Bacteriol ; 182(19): 5351-8, 2000 Oct.
Article in English | MEDLINE | ID: mdl-10986236

ABSTRACT

Sucrose is an important storage and transport sugar of plants and an energy source for many phytopathogenic bacteria. To analyze regulation and biochemistry of sucrose metabolism of the fire blight pathogen Erwinia amylovora, a chromosomal fragment which enabled Escherichia coli to utilize sucrose as sole carbon source was cloned. By transposon mutagenesis, the scr regulon of E. amylovora was tagged, and its nucleotide sequence was determined. Five open reading frames, with the genes scrK, scrY, scrA, scrB, and scrR, had high homology to genes of the scr regulons from Klebsiella pneumoniae and plasmid pUR400. scrB and scrR of E. amylovora were fused to a histidine tag and to the maltose-binding protein (MalE) of E. coli, respectively. ScrB (53 kDa) catalyzed the hydrolysis of sucrose with a K(m) of 125 mM. Binding of a MalE-ScrR fusion protein to an scrYAB promoter fragment was shown by gel mobility shifts. This complex dissociated in the presence of fructose but not after addition of sucrose. Expression of the scr regulon was studied with an scrYAB promoter-green fluorescent protein gene fusion and measured by flow cytometry and spectrofluorometry. The operon was affected by catabolite repression and induced by sucrose or fructose. The level of gene induction correlated to the sucrose concentration in plant tissue, as shown by flow cytometry. Sucrose mutants created by site-directed mutagenesis did not produce significant fire blight symptoms on apple seedlings, indicating the importance of sucrose metabolism for colonization of host plants by E. amylovora.


Subject(s)
Bacterial Proteins , Erwinia/genetics , Escherichia coli Proteins , Fructokinases/genetics , Genes, Bacterial , Glycoside Hydrolases/genetics , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Porins/genetics , Regulon , Repressor Proteins/genetics , Sucrose/metabolism , Cloning, Molecular , Erwinia/growth & development , Erwinia/pathogenicity , Fructokinases/metabolism , Gene Expression Regulation, Bacterial , Glycoside Hydrolases/metabolism , Mutagenesis, Site-Directed , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Porins/metabolism , Repressor Proteins/metabolism , Transcriptional Activation , Virulence , beta-Fructofuranosidase
15.
Phytopathology ; 90(11): 1263-8, 2000 Nov.
Article in English | MEDLINE | ID: mdl-18944430

ABSTRACT

ABSTRACT A 3.3-kb fragment of genomic DNA from bacteriophage Phi-Ea1h encoding an amylovoran-directed depolymerase lyase was sequenced, and three open reading frames (ORFs) were detected. The first ORF could encode a lysozyme and the second a holin that may form a pore supporting cell lysis by the lysozyme. The third ORF encodes a protein of 657 amino acids and deletion mutation in this DNA fragment abolished extracellular polysaccharide (EPS)-degrading activity. A putative promoter and a ribosome binding sequence were located in front of the gene. A polymerase chain reaction product spanning the gene was inserted into multi copy plasmids including fusions with a Histidine-tagged sequence to facilitate its purification on a nickel nitrilotriacetic acid column. Maximal activity of the purified protein was observed between pH 4 and 5 at 52 degrees C. Visualized by staining with fluorescein isothiocyanate-labeled lectin from Abrus precatorious, the enzyme degraded the EPS-capsules of Erwina amylovora. In virulence assays, no symptoms were detected for a low inoculum of an E. amylovora strain when pear slices were soaked in a solution of depolymerase in contrast to control slices without addition of the enzyme. Furthermore, gfp- or lux-labeled E. amylovora cells were not propagated, when their amylovoran capsules were removed by the depolymerase. The enzyme could be a tool for biological control of fire blight.

16.
EMBO J ; 18(12): 3241-8, 1999 Jun 15.
Article in English | MEDLINE | ID: mdl-10369665

ABSTRACT

In eukaryotes, tyrosine protein phosphorylation has been studied extensively, while in bacteria, it is considered rare and is poorly defined. We demonstrate that Escherichia coli possesses a gene, etk, encoding an inner membrane protein that catalyses tyrosine autophosphorylation and phosphorylation of a synthetic co-polymer poly(Glu:Tyr). This protein tyrosine kinase (PTK) was termed Ep85 or Etk. All the E.coli strains examined possessed etk; however, only a subset of pathogenic strains expressed it. Etk is homologous to several bacterial proteins including the Ptk protein of Acinetobacter johnsonii, which is the only other known prokaryotic PTK. Other Etk homologues are AmsA of the plant pathogen Erwinia amylovora and Orf6 of the human pathogen Klebsiella pneumoniae. These proteins are involved in the production of exopolysaccharide (EPS) required for virulence. We demonstrated that like Etk, AmsA and probably also Orf6 are PTKs. Taken together, these findings suggest that tyrosine protein phosphorylation in prokaryotes is more common than was appreciated previously, and that Etk and its homologues define a distinct protein family of prokaryotic membrane-associated PTKs involved in EPS production and virulence. These prokaryotic PTKs may serve as a new target for the development of new antibiotics.


Subject(s)
Escherichia coli Proteins , Escherichia coli/enzymology , Escherichia coli/pathogenicity , Polysaccharides, Bacterial/biosynthesis , Protein-Tyrosine Kinases/metabolism , Amino Acid Sequence , Antibodies/immunology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/immunology , Bacterial Proteins/metabolism , Cloning, Molecular , Cross Reactions , Enterobacteriaceae/enzymology , Enterobacteriaceae/genetics , Enterobacteriaceae/pathogenicity , Escherichia coli/genetics , Escherichia coli/growth & development , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Enzymologic , Intracellular Membranes/enzymology , Membrane Proteins/chemistry , Membrane Proteins/genetics , Membrane Proteins/immunology , Membrane Proteins/metabolism , Molecular Sequence Data , Open Reading Frames/genetics , Phosphoproteins/chemistry , Phosphoproteins/genetics , Phosphoproteins/immunology , Phosphoproteins/metabolism , Phosphorylation , Phosphotyrosine/immunology , Phosphotyrosine/metabolism , Protein-Tyrosine Kinases/chemistry , Protein-Tyrosine Kinases/genetics , Protein-Tyrosine Kinases/immunology , Sequence Homology, Amino Acid , Virulence
17.
J Mol Biol ; 289(5): 1239-51, 1999 Jun 25.
Article in English | MEDLINE | ID: mdl-10373365

ABSTRACT

A protease with a molecular mass of 48 kDa is secreted by the fire blight pathogen Erwinia amylovora in minimal medium. We characterized this activity as a metalloprotease, since the enzyme was inhibited by EDTA and o -phenanthroline. A gene cluster was determined to encode four genes connected to protease expression, including a structural gene (prtA) and three genes (prtD, prtE, prtF) for secretion of the protease, which are transcribed in the same direction. The organization of the protease gene cluster in E. amylovora is different from that in other Gram-negative bacteria, such as Erwinia chrysanthemi, Pseudomonas aeruginosa and Serratia marcescens. On the basis of the conservative motif of metalloproteases, PrtA was identified to be a member of the metzincin subfamily of zinc-binding metalloproteases, and was confirmed to be the 48 kDa protease on gels by sequencing of tryptic peptide fragments derived from the protein. The protease is apparently secreted into the external medium through the type I secretion pathway via PrtD, PrtE and PrtF which share more than 90% identity with the secretion apparatus for lipase of S. marcescens. A protease mutant was created by Tn 5 -insertions, and the mutation localized in the prtD gene. The lack of protease reduced colonization of an E. amylovora secretion mutant labelled with the gene for the green fluorescent protein (gfp) in the parenchyma of apple leaves.


Subject(s)
Erwinia/enzymology , Metalloendopeptidases/genetics , Amino Acid Sequence , Culture Media , DNA Transposable Elements , Erwinia/pathogenicity , Erwinia/physiology , Metalloendopeptidases/metabolism , Molecular Sequence Data , Multigene Family , Mutagenesis , Mutagenesis, Insertional , Plant Leaves , Rosales/microbiology , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Virulence , Zinc
18.
Int J Syst Bacteriol ; 49 Pt 2: 899-905, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10319516

ABSTRACT

A novel pathogen from Asian pears (Pyrus pyrifolia Nakai) was analysed by sequencing the 16S rDNA and the adjacent intergenic region, and the data were compared to related Enterobacteriaceae. The 16S rDNA of the Asian pear pathogen was almost identical with the sequence of Erwinia amylovora, in contrast to the 16S-23S rRNA intergenic transcribed spacer region of both species. A dendrogram was deduced from determined sequences of the spacer regions including those of several related species such as Erwinia amylovora, Enterobacter pyrinus, Pantoea stewartii subsp. stewartii and Escherichia coli. Dendrograms derived from 121 biochemical characteristics including Biotype 100 data placed the Asian pear pathogen close to Erwinia amylovora and more distantly to other members of the species Erwinia and to the species Pantoea and Enterobacter. Another DNA relatedness study was performed by DNA hybridizations and estimation of delta Tm values. The Asian pear strains constituted a tight DNA hybridization group (89-100%) and were barely related to strains of Erwinia amylovora (40-50%) with a delta Tm in the range of 5.2-6.8. The G + C content of DNA from the novel pathogen is 52 mol%. Therefore, it is proposed that strains isolated from Asian pears constitute a new species and the name Erwinia pyrifoliae is suggested; the type strain is strain Ep 16/96T (= CFBP 4172T = DSM 12163T).


Subject(s)
Erwinia/classification , Erwinia/genetics , Rosales/microbiology , Base Composition , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Erwinia/isolation & purification , Fruit , Molecular Sequence Data , Nucleic Acid Hybridization , Phenotype , Plant Diseases/microbiology , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 23S/genetics , Sequence Analysis, DNA
19.
Can J Microbiol ; 44(7): 657-66, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9783426

ABSTRACT

In a genomic library of Erwinia amylovora, a locus has been identified that can suppress an Erwinia stewartii rcsA mutant. In addition, the locus induced a mucoid sticky phenotype of colonies in a wild-type strain of Erwinia stewartii and increased exopolysaccharide synthesis in several species of bacteria belonging to the genus Erwinia. An open reading frame was identified at this locus encoding a 225 amino acid protein that contained a helix-turn-helix motif typical of transcriptional regulators. The corresponding gene was subsequently named rcsV (regulator of capsular synthesis affecting viscosity). A mutant of rcsV in wild-type Erwinia amylovora had no detectable phenotype and produced typical levels of amylovoran under laboratory conditions. The rcsV gene on a high copy number plasmid under the control of its own promoter did not alter amylovoran production, in contrast to in-frame fusions of the structural gene in expression vectors. Since even the lac promoter was inert in the expression of rcsV, a DNA-binding protein could inhibit transcription of the gene in Erwinia amylovora. On the other hand, an Erwinia amylovora rcsA mutant was suppressed by rcsV when its promoter was replaced and the structural gene fused in-frame with lacZ' or malE. Northern blots, with total RNA from Erwinia amylovora, or promoter analysis using the GUS reporter gene did not show expression of rcsV in Erwinia amylovora, although primer extension analysis did. RcsV could be a component involved in the regulation of amylovoran synthesis, and gene expression may require an unknown external signal during the life cycle or pathogenesis of Erwinia amylovora.


Subject(s)
Erwinia/genetics , Genes, Bacterial/physiology , Genes, Regulator/physiology , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Amino Acid Sequence , Base Sequence , Genes, Bacterial/genetics , Genes, Regulator/genetics , Molecular Sequence Data , Mutation , Open Reading Frames , Polymerase Chain Reaction , Sequence Alignment
20.
Phytopathology ; 88(5): 416-21, 1998 May.
Article in English | MEDLINE | ID: mdl-18944920

ABSTRACT

ABSTRACT To follow the movement of Erwinia amylovora in plant tissue without dissection, this bacterium was marked with either the lux operon from Vibrio fischeri or the gfp gene from the jellyfish Aequorea victoria, both carried on multicopy plasmids and expressed under the control of the lac promoter from Escherichia coli. Movement of the pathogen was visualized in leaves, stems, and roots of apple seedlings, and migration of E. amylovora was traced from inoculation sites in the stem to as far as the roots. Green fluorescent E. amylovora cells were observed in the xylem and later appeared to break out of the vessels into the intercellular spaces of the adjacent parenchyma. Inoculation in the intercostal region of leaves caused a zone of slow necrosis that finally resulted in bacterial invasion of the xylem vessels. Labeled bacteria could also be seen in association with the anchor sites of leaf hairs. Distortion of the epidermis adjacent to leaf hairs created openings that were observed by scanning electron microscopy. As the intercostal region, the bases of leaf hairs provided E. amylovora access to intact xylem vessels, which allowed further distribution of the pathogen in the host plant.

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