Assessing current genetic status of the Hainan gibbon using historical and demographic baselines: implications for conservation management of species of extreme rarity.

Evidence-based conservation planning is crucial for informing management decisions for species of extreme rarity, but collection of robust data on genetic status or other parameters can be extremely challenging for such species. The Hainan gibbon, possibly the world's rarest mammal, consists of a single population of ~25 individuals restricted to one protected area on Hainan Island, China, and has persisted for over 30 years at exceptionally low population size. Analysis of genotypes at 11 microsatellite loci from faecal samples for 36% of the current global population and tissue samples from 62% of existing historical museum specimens demonstrates limited current genetic diversity (Na = 2.27, Ar = 2.24, He  = 0.43); diversity has declined since the 19th century and even further within the last 30 years, representing declines of ~30% from historical levels (Na = 3.36, Ar = 3.29, He  = 0.63). Significant differentiation is seen between current and historical samples (FST  = 0.156, P = 0.0315), and the current population exhibits extremely small Ne (current Ne  = 2.16). There is evidence for both a recent population bottleneck and an earlier bottleneck, with population size already reasonably low by the late 19th century (historical Ne  = 1162.96). Individuals in the current population are related at the level of half- to full-siblings between social groups, and full-siblings or parent-offspring within a social group, suggesting that inbreeding is likely to increase in the future. The species' current reduced genetic diversity must be considered during conservation planning, particularly for expectations of likely population recovery, indicating that intensive, carefully planned management is essential.

Regulatory RNAs as mediators of virulence gene expression in bacteria.

Bacteria exploit functional diversity of RNAs in a wide range of regulatory mechanisms to control gene expression. In last few years, small RNA molecules have been discovered at a staggering rate in bacteria, mainly in Escherichia coli. While functions of many of these RNA molecules are still not known, several of them behave as key effectors of adaptive responses, such as environmental cue recognition, stress response, and virulence control. Most fascinating, perhaps, is the discovery that mRNAs behave as direct sensors of small molecules or of environmental cues. The astonishing diversity of RNA-dependent regulatory mechanisms is linked to the dynamic properties and versatility of the RNA structure. In this review, we relate several recent studies in different bacterial pathogens that illustrate the diverse roles of RNA to control virulence gene expression.

Molecular phylogeny of the major hylobatid divisions.

We describe DNA sequences for the mitochondrial control region and phenylalanine-tRNA from the four extant gibbon subgenera. In contrast to earlier studies on gibbon phylogeny that used other parts of the mtDNA, the control region depicts the crested gibbons (Nomascus) as the most basal group of the Hylobatidae, followed by Symphalangus, with Bunopithecus and Hylobates as the last to diverge. Our data show that the molecular distances among the four gibbon subgenera are in the same range as those between Homo and Pan, or even higher. As a consequence of these findings, we propose to raise all four gibbon subgenera to genus rank.

Characterization of the D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase gene (xfp) from Bifidobacterium lactis.

A D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase (Xfp) from the probiotic Bifidobacterium lactis was purified to homogeneity. The specific activity of the purified enzyme with D-fructose 6-phosphate as a substrate is 4.28 Units per mg of enzyme. K(m) values for D-xylulose 5-phosphate and D-fructose 6-phosphate are 45 and 10 mM, respectively. The native enzyme has a molecular mass of 550,000 Da. The subunit size upon sodium dodecyl sulfate-polyacrylamide gel electrophoresis (90,000 Da) corresponds with the size (92,529 Da) calculated from the amino acid sequence of the isolated gene (named xfp) encoding 825 amino acids. The xfp gene was identified on the chromosome of B. lactis with the help of degenerated nucleotide probes deduced from the common N-terminal amino acid sequence of both the native and denatured enzyme. Comparison of the deduced amino acid sequence of the cloned gene with sequences in public databases revealed high homologies with hypothetical proteins (26 to 55% identity) in 20 microbial genomes. The amino acid sequence derived from the xfp gene contains typical thiamine diphosphate (ThDP) binding sites reported for other ThDP-dependent enzymes. Two truncated putative genes, pta and guaA, were localized adjacent to xfp on the B. lactis chromosome coding for a phosphotransacetylase and a guanosine monophosphate synthetase homologous to products of genes in Mycobacterium tuberculosis. However, xfp is transcribed in B. lactis as a monocistronic operon. It is the first reported and sequenced gene of a phosphoketolase.

The relationship between duet songs and pair bonds in siamangs, Hylobates syndactylus.

One of the most commonly cited functional explanations for animal duet songs is strengthening of the pair bond. However, the evidence to support this view is, at best, limited. This study provides support by documenting a relationship between pair bonds and duet singing in siamangs. As a working hypothesis, we assume that if duetting were related to pair bonding, we might expect to see a relationship between duetting intensity and indicators of pair bond strength. Like most gibbon species, siamang pairs produce loud, long and well-coordinated duet songs. We recorded daily frequency and duration of duetting and three generally accepted indicators of pair bond strength (mutual grooming, behavioural synchronization and distance between mates) in 10 siamang groups in zoos. Duetting activity was positively correlated with grooming activity and behavioural synchronization, and negatively correlated with distance between mates. These results suggest that the production of coordinated duets by siamang pairs is related to pair bonding. Copyright 2000 The Association for the Study of Animal Behaviour.

Observations on the behavior of gibbons (Hylobates leucogenys, H. gabriellae, and H. lar) in the presence of mirrors.

Three captive gibbons (Hylobates leucogenys, H. gabriellae, and H. lar) were videotaped in the course of longitudinal exposure to mirrors introduced into their familiar cage or island housing situation. The gibbons, which differed in age, sex, species, and rearing condition, exhibited great individual differences in their behavioral reactions to mirrors, spanning from a minimal reaction dominated by social responses to a dramatic sequence of progressive behavioral change that featured a variety of contingency testing behaviors and included mirror-mediated, self-directed behavior. Additional information on the mirror competence of gibbons was provided by modified mark tests and a hidden object task. The results are discussed in relation to current criteria for self-recognition in primates and factors involved in individual and species differences in reactions to mirror exposure.

Transcriptional analysis of the rubrerythrin and superoxide dismutase genes of Clostridium perfringens.

We cloned and sequenced a 2.7-kb fragment of chromosomal DNA from Clostridium perfringens containing the superoxide dismutase-encoding gene, sod. Previously, rubrerythrin from C. perfringens had been isolated and its gene (rbr) had been cloned (Y. Lehmann, L. Meile, and M. Teuber, J. Bacteriol. 178:7152-7158, 1996). Northern blot experiments revealed a length of approximately 800 bases for each transcript of rbr and sod of C. perfringens. Thus, rbr and sod each represent a monocistronic operon. Their transcription start points were located by primer extension analyses. sod transcription was shown to depend on the growth phase, and it reached a maximum during the transition from log phase to stationary phase. Neither sod nor rbr transcription was influenced by oxidative stress.

Hypertrichosis in a gibbon (Hylobates muelleri).

A case of facial hypertrichosis in a museum specimen of a Bornean gibbon (Hylobates muelleri) is described. Apparently, hypertrichosis has not previously been reported to occur in nonhuman primates. Similar pathological conditions are known to occur in humans, but it is unknown whether any of the numerous forms of human hypertrichosis is equivalent to this case in gibbons.

Familial incidence of multiple births in a colony of chimpanzees (Pan troglodytes).

This paper describes the incidence of multiple births in the Yerkes Chimpanzee colony for a period of about 63 years. Pedigrees are presented for all multiple births. They demonstrate the recurrence of twins in relatively few family lines which can be traced back to a small number of ancestors. The findings suggest that twinning is a family trait in chimpanzees and they support the hypothesis that the incidence of multiple births is genetically influenced in this colony. In addition, a relatively high level of inbreeding may have enhanced the incidence of multiple births in these family lines. Similar findings are known from human populations.

Estimation of australopithecine stature from long bones: A.L.288-1 as a test case.

Regression equations for the estimation of stature from long bones, although derived from modern human populations, are frequently applied to early hominids. In fact, some of these equations have even been recommended or especially created to be applied to Australopithecus remains. In this study, 45 sets of regression and correlation formulae, recurrent in anthropological and medico-legal literature, are applied to long bones of the Pliocene hominid A.L.288-1 ('Lucy'), in order to assess which, if any, could be considered suitable for stature reconstruction in 'gracile' australopithecines. Virtually every method based on regression equations overestimates stature as compared with the estimate based on reconstruction of all the preserved skeletal parts. In addition, most methods failed to give consistent results with data from different limb segments. None of the sets of regression formulae tested here can be recommended as a reliable means of stature estimation in 'gracile' australopithecines.