Improved calibration of a solid substrate fermentation model

Background: Calibration of dynamic models in biotechnology is challenging. Kinetic models are usually complex and differential equations are highly coupled involving a large number of parameters. In addition, available measurements are scarce and infrequent, and some key variables are often non-measurable. Therefore, effective optimization and statistical analysis methods are crucial to achieve meaningful results. In this research, we apply a metaheuristic scatter search algorithm to calibrate a solid substrate cultivation model. Results: Even though scatter search has shown to be effective for calibrating difficult nonlinear models, we show here that a posteriori analysis can significantly improve the accuracy and reliability of the estimation. Conclusions: Sensibility and correlation analysis helped us detect reliability problems and provided suggestions to improve the design of future experiments.

An exploratory study of peat and sawdust as enhancers in the (bio)degradation of n-dodecane.

Current practice for dealing with oil spills involves the use of adsorbent materials to contain the pollution prior to bioremediation of the contaminated soil and adsorbent. This work presents a study of the effects of bioavailable carbon sources in the adsorbents peat and sawdust as organic nutrients for microorganisms specialized in degrading n-dodecane in soil and sawdust contaminated with hydrocarbon mixtures. An experimental bioremediation system was developed using n-dodecane, biomass adapted to n-dodecane, inorganic nutrients and the two adsorbents (sterilized). Bioreactors containing peat enhanced cell growth the most and also evolved more CO(2). An advantage of peat is that its soluble carbon sources can sustain higher cell densities compared to sawdust, and this may prove decisive when cultivating endogenous microorganisms for the aerobic bioremediation of soils contaminated with hydrocarbons. However, at the end of the 68-day experiment slightly higher n-dodecane removal was identified in the system containing sawdust-n-dodecane (99.6%) than in that with peat-n-dodecane (98.5%), evidencing the higher hydrocarbon retention capacity of peat. Based on this study, the use of sawdust instead of peat is recommended when an adapted inoculum is available for aerobic bioremediation of organic contaminants, whereas the use of peat is advisable to boost cell densities in order to improve the probability of sustaining a viable biomass in unfavorable conditions.