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1.
Vet Rec Open ; 3(1): e000154, 2016.
Article in English | MEDLINE | ID: mdl-26925239

ABSTRACT

The aim of the study was to determine which types of nutritional supplements were used in dressage and eventing horses, and the reasons that owners used supplements. An online questionnaire was distributed through British Eventing and Dressage websites, to collect data on demographics of owners and their horses, supplements used and their opinion on health and performance problems. Data were evaluated using descriptive analysis, Sign and Fisher's exact tests for quantitative data, and categorisation of qualitative data. In total, 599 responses met the inclusion criteria (441 dressage and 158 eventing horse owners). Participants had 26.4 (3-60) (mean (range)) years of riding experience, owned 1.2 (0-10) horses and used 2 (0-12) supplements in their highest performing horse. The main health and performance issues identified for dressage were 'energy/behaviour', 'lameness' and 'back and muscle problems'. The main issues for eventing were 'stamina and fitness levels',' lameness' and 'energy/behaviour'. The main reasons for using supplements in their highest performing horse were 'joints and mobility', and 'behaviour' for dressage, and 'electrolytes', and 'joints and mobility' for eventing. Lameness and behavioural problems were significant concerns within both disciplines. There was incongruence between owners' opinions of problems within their discipline and their reasons for using supplements.

2.
Oncogene ; 26(16): 2263-71, 2007 Apr 05.
Article in English | MEDLINE | ID: mdl-17016439

ABSTRACT

TRC8/RNF139 and von Hippel-Lindau (VHL) both encode E3 ubiquitin (Ub) ligases mutated in clear-cell renal carcinomas (ccRCC). VHL, inactivated in nearly 70% of ccRCCs, is a tumor suppressor encoding the targeting subunit for a Ub ligase complex that downregulates hypoxia-inducible factor-alpha. TRC8/RNF139 is a putative tumor suppressor containing a sterol-sensing domain and a RING-H2 motif essential for Ub ligase activity. Here we report that human kidney cells are growth inhibited by TRC8. Inhibition is manifested by G2/M arrest, decreased DNA synthesis and increased apoptosis and is dependent upon the Ub ligase activity of the RING domain. Tumor formation in a nude mouse model is inhibited by TRC8 in a RING-dependent manner. Expression of TRC8 represses genes involved in cholesterol and fatty acid biosynthesis that are transcriptionally regulated by the sterol response element binding proteins (SREBPs). Expression of activated SREBP-1a partially restores the growth of TRC8-inhibited cells. These data suggest that TRC8 modulation of SREBP activity comprises a novel regulatory link between growth control and the cholesterol/lipid homeostasis pathway.


Subject(s)
Kidney Neoplasms/genetics , Kidney Neoplasms/pathology , Kidney/physiology , Receptors, Cell Surface/genetics , Receptors, Cell Surface/physiology , Amino Acid Sequence , Carcinoma, Renal Cell/genetics , Carcinoma, Renal Cell/pathology , Cell Cycle , Cell Division , Cholesterol/biosynthesis , Cloning, Molecular , G2 Phase , Humans , Kidney/cytology , Molecular Sequence Data , Receptors, Cell Surface/chemistry
3.
Br J Cancer ; 92(12): 2266-77, 2005 Jun 20.
Article in English | MEDLINE | ID: mdl-15956968

ABSTRACT

Epidermal growth factor receptor (EGFR) and tumour growth factor alpha (TGFalpha) are frequently overexpressed in renal cell carcinoma (RCC) yet responses to single-agent EGFR inhibitors are uncommon. Although von Hippel-Lindau (VHL) mutations are predominant, RCC also develops in individuals with tuberous sclerosis (TSC). Tuberous sclerosis mutations activate mammalian target of rapamycin (mTOR) and biochemically resemble VHL alterations. We found that RCC cell lines expressed EGFR mRNA in the near-absence of other ErbB family members. Combined EGFR and mTOR inhibition synergistically impaired growth in a VHL-dependent manner. Iressa blocked ERK1/2 phosphorylation specifically in wt-VHL cells, whereas rapamycin inhibited phospho-RPS6 and 4E-BP1 irrespective of VHL. In contrast, phospho-AKT was resistant to these agents and MYC translation initiation (polysome binding) was similarly unaffected unless AKT was inhibited. Primary RCCs vs cell lines contained similar amounts of phospho-ERK1/2, much higher levels of ErbB-3, less phospho-AKT, and no evidence of phospho-RPS6, suggesting that mTOR activity was reduced. A subset of tumours and cell lines expressed elevated eIF4E in the absence of upstream activation. Despite similar amounts of EGFR mRNA, cell lines (vs tumours) overexpressed EGFR protein. In the paired cell lines, PRC3 and WT8, EGFR protein was elevated post-transcriptionally in the VHL mutant and EGF-stimulated phosphorylation was prolonged. We propose that combined EGFR and mTOR inhibitors may be useful in the subset of RCCs with wt-VHL. However, apparent differences between primary tumours and cell lines require further investigation.


Subject(s)
Antineoplastic Agents/therapeutic use , Carcinoma, Renal Cell/drug therapy , Kidney Neoplasms/drug therapy , Quinazolines/therapeutic use , Sirolimus/therapeutic use , Tumor Suppressor Proteins/genetics , Ubiquitin-Protein Ligases/genetics , Antineoplastic Agents/pharmacology , Carcinoma, Renal Cell/metabolism , Cell Line , Cell Line, Tumor , Drug Synergism , ErbB Receptors/biosynthesis , ErbB Receptors/genetics , Gefitinib , Humans , Kidney Neoplasms/metabolism , Mutation , Protein Kinases/biosynthesis , Protein Kinases/genetics , Quinazolines/pharmacology , Sirolimus/pharmacology , TOR Serine-Threonine Kinases , Von Hippel-Lindau Tumor Suppressor Protein
4.
Leukemia ; 18(6): 1059-63, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15085154

ABSTRACT

We previously reported that favorable and poor prognostic chromosomal rearrangements in acute myeloid leukemia (AML) were associated with distinct levels of HOX expression. We have now analyzed HOX expression in 50 independent adult AML patients (median age=62 years), together with FLT3 and FLT3-ligand mRNA levels, and FLT3 mutation determination. By cluster analysis, we could divide AMLs into cases with low, intermediate and high HOX expression. Cases with high expression were uniquely restricted to a subset of AMLs with intermediate cytogenetics (P=0.0174). This subset has significantly higher levels of FLT3 expression and appears to have an increase of FLT3 mutations (44%), while CEBPalpha mutations were infrequent (6%). FLT3 mRNA levels were correlated with the expression of multiple HOX genes, whereas FLT3 mutations were correlated with HOXB3. In some cases, FLT3 was expressed at levels equivalent to GAPDH in the absence of genomic amplification. We propose that high HOX expression may be characteristically associated with a distinct biologic subset of AML. The apparent global upregulation of HOX expression could be due to growth-factor signaling or, alternatively, these patterns may reflect a particular stage of differentiation of the leukemic cells.


Subject(s)
Biomarkers, Tumor/genetics , Genes, Homeobox/genetics , Leukemia, Myeloid/genetics , Leukemia, Myeloid/pathology , Proto-Oncogene Proteins/genetics , Receptor Protein-Tyrosine Kinases/genetics , Acute Disease , CCAAT-Enhancer-Binding Protein-alpha/genetics , Gene Expression Regulation, Leukemic , Humans , Middle Aged , RNA, Messenger/analysis , Up-Regulation , fms-Like Tyrosine Kinase 3
5.
J Clin Oncol ; 20(10): 2417-28, 2002 May 15.
Article in English | MEDLINE | ID: mdl-12011119

ABSTRACT

PURPOSE: E-cadherin (E-cad) and its associated intracellular molecules, catenins, are critical for intercellular epithelial adhesion and are often expressed in non-small-cell lung carcinomas (NSCLCs). We constructed tissue microarrays (TMAs) to investigate the expression of cadherins and catenins and their prognostic significance in NSCLC. PATIENTS AND METHODS: Tumor tissue samples from 193 patients with stages I to III NSCLC were obtained from the University of Colorado Cancer Center and Johns Hopkins Medical Institutions. Viable tumor was sampled in triplicate for the TMAs, and slides were stained by immunohistochemistry with antibodies against E-cad, N-cadherin, alpha (alpha)-, beta (beta)-, and gamma (gamma)-catenin, p120, p27, and adenomatous polyposis coli (APC) gene product. Clinical data were collected by the tumor registries. Patients were followed for a median period of 51 months (range, 18 to 100 months). RESULTS: Absent or severely reduced membranous expression for E-cad, alpha-, beta-, and gamma-catenin, and p120 were observed in 10%, 17%, 8%, 31%, and 61% of the cases, respectively. Tumor cell dedifferentiation correlated with reduced expression for E-cad, beta-catenin, gamma-catenin, and p120 in squamous cell carcinomas but not in adenocarcinomas. There was an inverse correlation between nodal metastasis and expression of E-cad and gamma-catenin. Besides the traditional clinical prognostic variables, E-cad and alpha-, beta-, and gamma-catenin expression were of positive prognostic value in univariate survival analyses. In multivariate analysis, E-cad expression was the only independent prognostic factor for survival in addition to age, node status, tumor status, and pathologic surgical margins. CONCLUSION: Reduced expression of E-cad and catenins is associated with tumor cell dedifferentiation, local invasion, regional metastasis, and reduced survival in NSCLC. E-cad is an independent prognostic factor for NSCLC survival.


Subject(s)
Cadherins/metabolism , Carcinoma, Non-Small-Cell Lung/metabolism , Lung Neoplasms/metabolism , Muscle Proteins , Adenomatous Polyposis Coli Protein/metabolism , Adult , Aged , Aged, 80 and over , Carcinoma, Non-Small-Cell Lung/pathology , Carcinoma, Non-Small-Cell Lung/surgery , Catenins , Cell Adhesion Molecules/metabolism , Cell Membrane/metabolism , Female , Humans , Immunoenzyme Techniques , Lung Neoplasms/pathology , Lung Neoplasms/surgery , Lymph Nodes/pathology , Lymphatic Metastasis , Male , Microfilament Proteins/metabolism , Middle Aged , Neoplasm Staging , Phosphoproteins/metabolism , Prognosis , Survival Rate , Delta Catenin
6.
Leukemia ; 16(2): 186-95, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11840284

ABSTRACT

We used a degenerate RT-PCR screen and subsequent real-time quantitative RT-PCR assays to examine the expression of HOX and TALE-family genes in 34 cases of chromosomally defined AML for which outcome data were available. AMLs with favorable cytogenetic features were associated with low overall HOX gene expression whereas poor prognostic cases had high levels. Characteristically, multiple HOXA family members including HOXA3-HOXA10 were jointly overexpressed in conjunction with HOXB3, HOXB6, MEIS1 and PBX3. Higher levels of expression were also observed in the FAB subtype, AML-M1. Spearmann correlation coefficients indicated that the expression levels for many of these genes were highly inter-related. While we did not detect any significant correlations between HOX expression and complete response rates or age in this limited set of patients, there was a significant correlation between event-free survival and HOXA7 with a trend toward significance for HoxA9, HoxA4 and HoxA5. While patients with elevated HOX expression did worse, there were notable exceptions. Thus, although HOX overexpression and clinical resistance to chemotherapy often coincide, they are not inextricably linked. Our results indicate that quantitative HOX analysis has the potential to add new information to the management of patients with AML, especially where characteristic chromosomal alterations are lacking.


Subject(s)
Gene Expression Profiling/methods , Gene Expression Regulation, Leukemic , Genes, Homeobox , Leukemia, Myeloid/genetics , Acute Disease , Adult , Aged , Chromosome Aberrations , Chromosomes, Human/genetics , Computer Systems , DNA Primers , Female , Follow-Up Studies , Gene Amplification , Homeodomain Proteins/biosynthesis , Humans , Leukemia, Myeloid/classification , Leukemia, Myeloid/mortality , Male , Middle Aged , Multigene Family , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , ROC Curve , Reverse Transcriptase Polymerase Chain Reaction , Survival Analysis , Treatment Outcome
7.
Leukemia ; 15(9): 1408-14, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11516101

ABSTRACT

Many patients with t(8;21) AML have residual positive cells during remission. We previously developed D-FISH probes that detect both derivative chromosomes and the normal alleles. In negative controls, only 2/44,000 (0.0045%) positive signals were observed. To investigate MRD, we examined specimens from 29 patients who had initially obtained CR. In remission patients, 61% had 1-4/2000 positive cells (0.05-0.19%). Higher frequencies were found in two patients in early relapse and in one patient in early remission. However, a negative test did not exclude relapse. Since false positives were negligible and because most t(8;21) AMLs express CD34, we asked whether cell sorting combined with FISH would increase the sensitivity. In one patient, we observed that 80% of CD34+ cells were t(8;21)+ at 2 months from initial clinical and cytogenetic remission. However, by 5 months the pre- and post-sorted populations contained 0.15% and 0.06% t(8;21) cells, respectively. Whereas essentially all t(8;21) cells in the initial specimen expressed CD34, only 0.6% were subsequently CD34+. These results are consistent with in vitro assays showing that residual t(8;21) cells undergo differentiation. Thus, FISH can identify MRD in a majority of t(8;21) patients and, combined with CD34+ selection, may provide an indirect assessment of the differentiation state of residual t(8;21) cells.


Subject(s)
Antigens, CD34/analysis , Chromosomes, Human, Pair 21 , Chromosomes, Human, Pair 8 , Leukemia, Myeloid/genetics , Leukemia, Myeloid/pathology , Acute Disease , Cell Separation , False Positive Reactions , Flow Cytometry , Humans , In Situ Hybridization, Fluorescence , Karyotyping , Neoplasm, Residual , Remission Induction , Translocation, Genetic
9.
Br J Cancer ; 85(1): 64-8, 2001 Jul 06.
Article in English | MEDLINE | ID: mdl-11437403

ABSTRACT

Beta-catenin forms complexes with Tcf and Lef-1 and functions as a transcriptional activator in the Wnt signalling pathway. Although recent investigations have been focused on the role of the adenomatous polyposis coli (APC)/ beta-catenin/Tcf pathway in human tumorigenesis, there have been very few reports on mutations of the beta-catenin gene in a variety of tumour types. Using PCR and single-strand conformational polymorphism analysis, we examined 93 lung, 9 breast, 6 kidney, 19 cervical and 7 ovarian carcinoma cell lines for mutations in exon 3 of the beta-catenin gene. In addition, we tested these same samples for mutations in the NH2-terminal regulatory region of the gamma-catenin gene. Mutational analysis for the entire coding region of beta-catenin cDNA was also undertaken in 20 lung, 9 breast, 5 kidney and 6 cervical carcinoma cell lines. Deletion of most beta-catenin coding exons was confirmed in line NCI-H28 (lung mesothelioma) and a silent mutation at codon 214 in exon 5 was found in HeLa (cervical adenocarcinoma). A missense mutation at codon 19 and a silent mutation at codon 28 in the NH2-terminal regulatory region of the gamma-catenin gene were found in H1726 (squamous cell lung carcinoma) and H1048 (small cell lung carcinoma), respectively. Neither deletions nor mutations of these genes were detected in the other cell lines examined. These results suggest that beta- and gamma-catenins are infrequent mutational targets during development of human lung, breast, kidney, cervical and ovarian carcinomas.


Subject(s)
Cytoskeletal Proteins/genetics , Mutation , Neoplasms/genetics , Trans-Activators , DNA Mutational Analysis , Desmoplakins , Exons/genetics , Female , Humans , Kidney Neoplasms/genetics , Lung Neoplasms/genetics , Ovarian Neoplasms/genetics , Polymorphism, Single-Stranded Conformational , Reverse Transcriptase Polymerase Chain Reaction , Signal Transduction/genetics , Tumor Cells, Cultured , Uterine Cervical Neoplasms/genetics , beta Catenin , gamma Catenin
10.
Curr Protoc Hum Genet ; Chapter 5: Unit 5.7, 2001 May.
Article in English | MEDLINE | ID: mdl-18428294

ABSTRACT

This unit provides protocols for characterizing DNA segments cloned in YACs and for purifying YACs from yeast chromosomes. The first basic protocol describes Southern blotting and partial-digest restriction analysis of YACs. These methods are useful for determining the size and complexity of the cloned insert DNA, the presence and location of particular restriction sites or sequences, and even the species of origin of the insert DNA (indicated by hybridization to species-specific repetitive elements such as Alu repeats). The second basic protocol describes gel purification of YACs for use in procedures requiring pure YAC DNA, such as mammalian-cell transformation and subcloning into smaller insert vectors. The third basic protocol details characterizing and analyzing YACs: in vivo fragmentation via homologous recombination with specialized fragmentation vectors containing specific probe sequences or repetitive elements, followed by Southern blotting with YAC- and human-derived probes.


Subject(s)
Chromosomes, Artificial, Yeast/genetics , Blotting, Southern , DNA, Recombinant/genetics , DNA, Recombinant/isolation & purification , Electrophoresis, Gel, Pulsed-Field , Genetic Vectors , Genetics, Medical , Humans , Recombination, Genetic
11.
Proc Natl Acad Sci U S A ; 97(23): 12776-81, 2000 Nov 07.
Article in English | MEDLINE | ID: mdl-11070089

ABSTRACT

HOX genes encode transcription factors that control patterning and cell fates. Alterations in HOX expression have been clearly implicated in leukemia, but their role in most other malignant diseases remains unknown. By using degenerate reverse transcription-PCR and subsequent real-time quantitative assays, we examined HOX expression in lung cancer cell lines, direct tumor-control pairs, and bronchial epithelial cultures. As in leukemia, genes of the HOX9 paralogous group and HOXA10 were frequently overexpressed. For HOXB9, we confirmed that elevated RNA was associated with protein overexpression. In some cases, marked HOX overexpression was associated with elevated FGF10 and FGF17. During development, the WNT pathway affects cell fate, polarity, and proliferation, and WNT7a has been implicated in the maintenance of HOX expression. In contrast to normal lung and mortal short-term bronchial epithelial cultures, WNT7a was frequently reduced or absent in lung cancers. In immortalized bronchial epithelial cells, WNT7a was lost concomitantly with HOXA1, and a statistically significant correlation between the expression of both genes was observed in lung cancer cell lines. Furthermore, we identified a homozygous deletion of beta-catenin in the mesothelioma, NCI-H28, associated with reduced WNT7a and the lowest overall cell line expression of HOXA1, HOXA7, HOXA9, and HOXA10, whereas HOXB9 levels were unaffected. Of note, both WNT7a and beta-catenin are encoded on chromosome 3p, which undergoes frequent loss of heterozygosity in these tumors. Our results suggest that alterations in regulatory circuits involving HOX, WNT, and possibly fibroblast growth factor pathways occur frequently in lung cancer.


Subject(s)
DNA-Binding Proteins/genetics , Gene Expression Profiling , Homeodomain Proteins/genetics , Lung Neoplasms/genetics , Neoplasm Proteins , Proteins/genetics , Proto-Oncogene Proteins , Transcription Factors/genetics , Blotting, Western/methods , Cell Line , Cell Line, Transformed , DNA-Binding Proteins/biosynthesis , Homeobox A10 Proteins , Homeodomain Proteins/biosynthesis , Humans , Protein Biosynthesis , Reverse Transcriptase Polymerase Chain Reaction , Transcription Factors/biosynthesis , Tumor Cells, Cultured , Wnt Proteins
12.
Clin Cancer Res ; 6(5): 1616-25, 2000 May.
Article in English | MEDLINE | ID: mdl-10815878

ABSTRACT

Lung carcinogenesis is assumed to be a multistep process, but detailed understanding of the sequential morphological and molecular changes preceding invasive lung cancer remains elusive. To better understand early lung carcinogenesis, we initiated a program of fluorescence bronchoscopy in smokers at high risk for lung cancer. In the bronchial biopsies from these subjects, we observed a unique lesion consisting of capillary blood vessels closely juxtaposed to and projecting into metaplastic or dysplastic squamous bronchial epithelium, angiogenic squamous dysplasia (ASD). Serial sections of the capillary projections confirmed that they represent intramucosal capillary loops. Microvessel density in ASD was elevated in comparison to normal mucosa (P = 0.0003) but not in comparison to other forms of hyperplasia or dysplasia. ASD thus represents a qualitatively distinct form of angiogenesis in which there is architectural rearrangement of the capillary microvasculature. Genetic analysis of surface epithelium in a random subset of lesions revealed loss of heterozygosity at chromosome 3p in 53% of ASD lesions. No confirmed p53 mutations were identified. Compared with normal epithelium, proliferative activity was markedly elevated in ASD lesions. ASD occurred in 54 of 158 (34%) high-risk smokers without carcinoma and in 6 of 10 patients with squamous carcinoma who underwent fluorescence bronchoscopy. One early-stage invasive carcinoma was noteworthy for the occurrence of ASD juxtaposed to invasive tumor. Seventy-seven (59%) of the ASD lesions were detected by abnormal fluorescence alone. Twenty bronchial sites (11 patients) were rebiopsied 1 year after the initial diagnosis. At nine (45%) of these sites, the lesion was found to persist. The lesion was not present in biopsies from 16 normal nonsmoker control subjects. The presence of this lesion in high-risk smokers suggests that aberrant patterns of microvascularization may occur at an early stage of bronchial carcinogenesis.


Subject(s)
Bronchi/pathology , Carcinoma, Squamous Cell/pathology , Lung Neoplasms/pathology , Neovascularization, Pathologic , Aged , Bronchi/blood supply , Bronchi/chemistry , Bronchoscopy , Carcinoma, Squamous Cell/genetics , Carcinoma, Squamous Cell/metabolism , Cell Division , Chromosomes, Human, Pair 3/genetics , Endothelium, Vascular/cytology , Endothelium, Vascular/metabolism , Female , Humans , Immunohistochemistry , Ki-67 Antigen/analysis , Loss of Heterozygosity , Male , Middle Aged , Mutation , Platelet Endothelial Cell Adhesion Molecule-1/analysis , Risk Factors , Tumor Suppressor Protein p53/genetics
13.
Cancer Genet Cytogenet ; 117(1): 9-18, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10700859

ABSTRACT

A common amplification target encompassing chromosome region 3q25 to q27 has been identified by comparative genomic hybridization analyses in tumors of the cervix, ovary, endometrium, lung, and head and neck. Because this segment spans at least 30 megabases, we undertook a molecular analysis of copy number to more precisely define the amplification domain. Our Southern blot and fluorescence in situ hybridization results with the use of 17 markers confirmed the presence of low-level 3q amplification events in cervical, ovarian, and variant SCLC tumors. Most of the tumor types studied appeared to have similar, broad amplification domains centered within 3q26.2, suggesting that the same target is being affected in all. The ovarian carcinoma cell line NIH:OVCAR3 had a highly restricted amplification domain spanned by four overlapping YAC clones, suggesting a small target. The region of highest amplification included the gene for the RNA component of telomerase (hTR), supporting it as a potential target. Although the importance of low-level amplification is unknown, the consistent and reproducible nature of this event in a variety of carcinomas suggests that 3q26.2 harbors an oncogene whose low-level amplification has a significant influence on tumor biology.


Subject(s)
Chromosomes, Human, Pair 3 , Lung Neoplasms/genetics , Ovarian Neoplasms/genetics , Uterine Cervical Neoplasms/genetics , Blotting, Southern , Chromosomes, Artificial, Yeast , Female , Gene Amplification , Humans , In Situ Hybridization, Fluorescence , Tumor Cells, Cultured
14.
Oncogene ; 18(16): 2589-97, 1999 Apr 22.
Article in English | MEDLINE | ID: mdl-10353602

ABSTRACT

DEF-3(g16/NY-LU-12) encodes a novel RNA binding protein isolated by positional cloning from an SCLC homozygous deletion region in 3p21.3 and, in parallel, as a differentially expressed gene during myelopoiesis from FDCPmix-A4 cells. DEF-3(g16/NY-LU-12) is ubiquitously expressed during mouse embryogenesis and in adult organs while human hematopoietic tissues showed differential expression. The mouse and human proteins are highly conserved containing two RNA recognition motifs (RRMs) and other domains associated with RNA binding and protein-protein interactions. A database search identified related proteins in human, rat, C. elegans and S. pombe including the 3p21.3 co-deleted gene, LUCA15. Recombinant proteins containing the RRMs of DEF-3(g16/NY-LU-12) and LUCA15 specifically bound poly(G) RNA homopolymers in vitro. These RRMs also show similarity to those of the Hu protein family. Since anti-Hu RRM domain antibodies are associated with an anti-tumor effect and paraneoplastic encephalomyelitis, we tested sera from Hu syndrome patients with the RRMs of DEF-3(g16/NY-LU-12) and LUCA15. These were non-reactive. Thus, DEF-3(g16/NY-LU-12) and LUCA15 represent members of a novel family of RNA binding proteins with similar expression patterns and in vitro RNA binding characteristics. They are co-deleted in some lung cancers and immunologically distinct from the Hu proteins.


Subject(s)
Carcinoma, Small Cell/genetics , Chromosomes, Human, Pair 3 , Lung Neoplasms/genetics , RNA-Binding Proteins/genetics , Adult , Amino Acid Sequence , Chromosome Mapping , Cloning, Molecular , Conserved Sequence , Evolution, Molecular , Humans , Molecular Sequence Data , Protein Binding , Sequence Analysis, DNA , Sequence Deletion , Sequence Homology, Amino Acid
15.
Chemosphere ; 38(4): 759-70, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10903109

ABSTRACT

PCDD/F data are presented from 75 samples of primary emissions sampled between 1995-97 as part of the compliance monitoring survey undertaken by the UK Environment Agency. Municipal solid waste (MSW), chemical waste and clinical waste incinerators, cement kilns, sinter plants and sewage sludge incinerators were the source categories monitored and reported here. Based on this monitoring programme, the previous national UK emission estimates by Eduljee and Dyke (1) of 560-1100 g I-TEQ a(-1) for 1993 have been revised downwards to 220-660 g I-TEQ a(-1). Despite source reduction measures, MSW incinerators remain a significant source of PCDD/Fs to the atmosphere, contributing between 30-50% of the EPCDD/F I-TEQ emission, rather than the approximately 80% they were estimated to contribute in 1993. 2,3,7,8-substituted PCDD/F congener profile data are presented for some of the source categories and generally support the view that differences in the mixtures ('fingerprints') of PCDD/Fs emitted from different sources are observed. New data on the dioxin-like PCB emissions are presented for cement kilns and sinter plants. These show that TEQ-rated PCBs can make an important contribution to the I-TEQ emitted from certain combustion sources. High concentrations of a full range of PCB congeners/homologues have been measured in the atmosphere close to sintering strands, although the precise source of PCBs from this process remains unclear.

16.
Cancer Res ; 58(20): 4701-7, 1998 Oct 15.
Article in English | MEDLINE | ID: mdl-9788625

ABSTRACT

Hemizygous deletion in the short (p) arm of chromosome 3 is a common finding in non-small cell lung carcinoma (NSCLC) and is postulated to be a crucial early change in lung tumorigenesis. Yet one of the most frequent nuclear abnormalities in both NSCLC and premalignant bronchial epithelium is increase in chromosomal copy number. Deletion and duplication have not been assessed in the same tumor set by both molecular and cytogenetic methods to determine whether allelic loss correlates with chromosomal duplication in the same tumor cell populations. It is also not established what biological mechanisms might lead to allelic deletion and chromosomal duplication. We have investigated changes in the copy number of chromosome 3 in touch preparations of 38 NSCLCs (19 adenocarcinomas and 19 squamous cell carcinomas) using dual-target, dual-color fluorescence in situ hybridization (FISH) assays. Chromosome 3 centromere probe was matched with a 3p14.2 probe [intron 4 of the fragile histidine triad (FHIT) gene] and a 3p21.31 probe (HSemaIV gene). We then correlated FISH results with results of molecular analyses for allelic losses at loci in the regions to which the FISH probes mapped in 20 of these cases. Although various combinations of FISH abnormalities were sometimes detected within the same specimens, individual cases could be classified according to the predominant FISH pattern, usually with one abnormality present in >60% of tumor cells. Chromosomal duplication, indicated by the presence of more than two centromeric signals, was the most frequent abnormality observed by FISH and was accompanied by loss of specific sequences on 3p in approximately one-half of the specimens in which it was observed. The most frequent abnormality observed by molecular analysis was loss of heterozygosity (LOH) in both of the chromosomal regions tested and was demonstrated in 83% of cases with chromosomal duplication. We conclude that LOH may occur in the presence of chromosomal duplication, suggesting that the duplicated chromosome is homozygous. Our findings imply that LOH occurs before chromosomal duplication during lung carcinogenesis.


Subject(s)
Acid Anhydride Hydrolases , Carcinoma, Non-Small-Cell Lung/genetics , Chromosomes, Human, Pair 3 , Gene Duplication , Loss of Heterozygosity , Lung Neoplasms/genetics , Neoplasm Proteins , Humans , In Situ Hybridization, Fluorescence , Proteins/genetics
17.
Oncogene ; 17(4): 475-9, 1998 Jul 30.
Article in English | MEDLINE | ID: mdl-9696041

ABSTRACT

A putative tumor suppressor, PTEN/MMAC1 gene at 10q23 was recently identified and found to be mutated in many different human tumors. To determine the role of the PTEN/MMAC1 gene in lung cancer, we screened 34 small cell lung cancer (SCLC) cell lines, 10 SCLC tumors, 13 non-small cell lung cancer (NSCLC) cell lines and 10 NSCLC tumors using Denaturing HPLC (DHPLC) and direct sequencing methods. In SCLC, six (18%) of the cell lines and one of the primary tumor samples (10%) showed alterations of the PTEN/MMAC1 gene including point mutations, small fragment deletions, and homozygous deletions. All of the point mutations and small fragment deletions were observed in hemizygously deleted cell lines. In contrast to SCLC, none of the NSCLC tumors or cell lines had mutations in the PTEN/MMAC1 gene. These data indicate that PTEN/MMAC1 mutations contribute to the pathogenesis and neoplastic evolution in SCLC but not in NSCLC.


Subject(s)
Carcinoma, Non-Small-Cell Lung/genetics , Carcinoma, Small Cell/genetics , Genes, Tumor Suppressor , Lung Neoplasms/genetics , Mutation , Phosphoric Monoester Hydrolases , Protein Tyrosine Phosphatases/genetics , Tumor Suppressor Proteins , Carcinoma, Non-Small-Cell Lung/pathology , Carcinoma, Small Cell/pathology , Exons , Humans , Lung Neoplasms/pathology , PTEN Phosphohydrolase , RNA Splicing , Tumor Cells, Cultured
18.
Proc Natl Acad Sci U S A ; 95(16): 9572-7, 1998 Aug 04.
Article in English | MEDLINE | ID: mdl-9689122

ABSTRACT

The 3;8 chromosomal translocation, t(3;8)(p14.2;q24.1), was described in a family with classical features of hereditary renal cell carcinoma. Previous studies demonstrated that the 3p14.2 breakpoint interrupts the fragile histidine triad gene (FHIT) in its 5' noncoding region. However, evidence that FHIT is causally related to renal or other malignancies is controversial. We now show that the 8q24.1 breakpoint region encodes a 664-aa multiple membrane spanning protein, TRC8, with similarity to the hereditary basal cell carcinoma/segment polarity gene, patched. This similarity involves two regions of patched, the putative sterol-sensing domain and the second extracellular loop that participates in the binding of sonic hedgehog. In the 3;8 translocation, TRC8 is fused to FHIT and is disrupted within the sterol-sensing domain. In contrast, the FHIT coding region is maintained and expressed. In a series of sporadic renal carcinomas, an acquired TRC8 mutation was identified. By analogy to patched, TRC8 might function as a signaling receptor and other pathway members, to be defined, are mutation candidates in malignant diseases involving the kidney and thyroid.


Subject(s)
Acid Anhydride Hydrolases , Carcinoma, Renal Cell/genetics , Kidney Neoplasms/genetics , Membrane Proteins/genetics , Neoplasm Proteins/genetics , Proteins/genetics , Translocation, Genetic , Amino Acid Sequence , Base Sequence , Carcinoma, Renal Cell/pathology , Chromosome Mapping , Chromosomes, Human, Pair 3 , Chromosomes, Human, Pair 8 , DNA Primers , Humans , Kidney Neoplasms/pathology , Membrane Proteins/chemistry , Molecular Sequence Data , Receptors, Cell Surface , Sequence Homology, Amino Acid , Tumor Cells, Cultured
19.
Genes Chromosomes Cancer ; 21(4): 281-9, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9559339

ABSTRACT

The FRA3B at 3p14.2 is the most common of the constitutive aphidicolin-inducible fragile sites. Using independent approaches, four groups of investigators have cloned and characterized this fragile site. The results of these studies have revealed that the FRA3B differs from other heretofore cloned rare fragile sites. First, instability as manifested by chromosome breakage occurs over a large region of DNA, encompassing at least 500 kb. Second, sequence analysis has not revealed trinucleotide repeat motifs, characteristic of the rare fragile sites. In addition to containing the FRA3B, band 3p14 is also likely to contain a tumor suppressor gene, as evidenced by the presence of deletions, rearrangements, and allele loss in a variety of human tumors, including lung, renal, nasopharyngeal, cervical, and breast carcinomas. The recently cloned FHIT gene in 3p14.2 is a promising candidate tumor suppressor gene, since aberrant FHIT transcripts have been found in a significant proportion of cancer-derived cell lines and primary tumors of the digestive and respiratory tracts. Nonetheless, several lines of evidence garnered over the past year have called into question the role of FHIT as a classical tumor suppressor gene, and raised the question of whether its apparent involvement simply reflects its location within an unstable region of the genome. In the following study, we have summarized the evidence in support of FHIT as a tumor suppressor gene as well as evidence against such a role, and the experimental evidence needed to demonstrate that FHIT functions as a tumor suppressor gene in the pathogenesis of human tumors. The paradigm of FHIT emphasizes that confirming the role of a candidate tumor suppressor gene may prove difficult, particularly for those genes that are located in genetically unstable regions.


Subject(s)
Acid Anhydride Hydrolases , Chromosome Fragility , Genes, Tumor Suppressor/physiology , Neoplasm Proteins/genetics , Proteins/genetics , Chromosome Fragile Sites , Fragile X Syndrome/genetics , Humans
20.
Nat Genet ; 17(1): 65-70, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9288099

ABSTRACT

The gene for spinocerebellar ataxia 7 (SCA7) has been mapped to chromosome 3p12-13. By positional cloning, we have identified a new gene of unknown function containing a CAG repeat that is expanded in SCA7 patients. On mutated alleles, CAG repeat size is highly variable, ranging from 38 to 130 repeats, whereas on normal alleles it ranges from 7 to 17 repeats. Gonadal instability in SCA7 is greater than that observed in any of the seven known neuro-degenerative diseases caused by translated CAG repeat expansions, and is markedly associated with paternal transmissions. SCA7 is the first such disorder in which the degenerative process also affects the retina.


Subject(s)
Chromosomes, Human, Pair 3 , Nerve Tissue Proteins/genetics , Spinocerebellar Degenerations/genetics , Trinucleotide Repeats , Adult , Age of Onset , Aged , Alleles , Amino Acid Sequence , Ataxin-7 , Chromosome Mapping , Chromosomes, Artificial, Yeast , Cloning, Molecular , Female , Genetic Markers , Genetic Variation , Genomic Imprinting , Humans , Male , Middle Aged , Molecular Sequence Data , Nerve Tissue Proteins/biosynthesis , Nerve Tissue Proteins/chemistry , Retina/pathology , Retinal Degeneration/genetics , Retinal Degeneration/physiopathology , Spinocerebellar Degenerations/mortality , Spinocerebellar Degenerations/physiopathology
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