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1.
Invest New Drugs ; 36(5): 836-847, 2018 10.
Article in English | MEDLINE | ID: mdl-29333575

ABSTRACT

Purpose and Methods Trop-2 is a glycoprotein over-expressed in many solid tumors but at low levels in normal human tissue, providing a potential therapeutic target. We conducted a phase 1 dose-finding study of PF-06664178, an antibody-drug conjugate that targets Trop-2 for the selective delivery of the cytotoxic payload Aur0101. The primary objective was to determine the maximum tolerated dose and recommended phase 2 dose. Secondary objectives included further characterization of the safety profile, pharmacokinetics and antitumor activity. Eligible patients were enrolled and received multiple escalating doses of PF-06664178 in an open-label and unblinded manner based on a modified continual reassessment method. Results Thirty-one patients with advanced or metastatic solid tumors were treated with escalating doses of PF-06664178 given intravenously every 21 days. Doses explored ranged from 0.15 mg/kg to 4.8 mg/kg. Seven patients experienced at least one dose limiting toxicity (DLT), either neutropenia or rash. Doses of 3.60 mg/kg, 4.2 mg/kg and 4.8 mg/kg were considered intolerable due to DLTs in skin rash, mucosa and neutropenia. Best overall response was stable disease in 11 patients (37.9%). None of the patients had a partial or complete response. Systemic exposure of PF-06664178 increased in a dose-related manner. Serum concentrations of free Aur0101 were substantially lower than those of PF-06664178 and total antibody. No correlation of Trop-2 expression and objective response was observed, although Trop-2 overexpression was not required for study entry. The intermediate dose of 2.4 mg/kg appeared to be the highest tolerated dose, but this was not fully explored as the study was terminated early due to excess toxicity. Conclusion PF-06664178 showed toxicity at high dose levels with modest antitumor activity. Neutropenia, skin rash and mucosal inflammation were dose limiting toxicities. Findings from this study may potentially aid in future antibody drug conjugate design and trials.


Subject(s)
Aminobenzoates/therapeutic use , Antineoplastic Agents/therapeutic use , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Cell Adhesion Molecules/antagonists & inhibitors , Immunoconjugates/therapeutic use , Neoplasms/drug therapy , Oligopeptides/therapeutic use , Aminobenzoates/pharmacokinetics , Antigens, Neoplasm/metabolism , Antineoplastic Agents/pharmacokinetics , Antineoplastic Combined Chemotherapy Protocols/pharmacokinetics , Cell Adhesion Molecules/metabolism , Exanthema/chemically induced , Female , Humans , Immunoconjugates/pharmacokinetics , Male , Maximum Tolerated Dose , Middle Aged , Neoplasms/metabolism , Neutropenia/chemically induced , Oligopeptides/pharmacokinetics , Treatment Outcome
2.
Water Res ; 126: 442-449, 2017 12 01.
Article in English | MEDLINE | ID: mdl-28992591

ABSTRACT

Understanding fecal indicator bacteria persistence in aquatic environments is important when making management decisions to improve instream water quality. Routinely, bacteria fate and transport models that rely on published kinetic decay constants are used to inform such decision making but may not adequately represent instream conditions. The objective of this work was to evaluate bacterial responses to applied nutrient amendments and provide additional information regarding bacterial response to applied changes that can be incorporated into future modeling efforts. Re-created stream mesocosms were established in laboratory-based, repurposed algae raceways filled with water and sediment from a small, 3rd order Southeast Texas stream. Mesocosm treatments consisted of low (10x) or high (50x) nutrient doses above ambient water concentrations operated at low (0.032 m/s) or high (0.141 m/s) flow rates. Escherichia coli and heterotrophic bacterial concentrations were quantified in water and sediment over 22 days. No significant differences in kinetic constants were observed among E. coli in water or sediment, and only E. coli in sediment showed any growth response. Heterotrophic plate counts revealed a pronounced growth response in water and sediment within 24 h of nutrient addition but did not differ significantly from control mesocosms. Significant kinetic constant differences between E. coli and heterotrophic bacteria in water were identified (p < 0.01) but did not differ significantly in sediment (p > 0.48). Results indicate that nutrient addition does affect microbial numbers instream, but competition from heterotrophic bacteria may prevent an E. coli growth response.


Subject(s)
Escherichia coli/physiology , Eutrophication , Rivers/microbiology , Bacteria , Feces/microbiology , Geologic Sediments , Texas , Water Microbiology , Water Quality
3.
Lett Appl Microbiol ; 63(5): 369-375, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27513521

ABSTRACT

There are numerous regulatory-approved Escherichia coli enumeration methods, but it is not known whether differences in media composition and incubation conditions impact the diversity of E. coli populations detected by these methods. A study was conducted to determine if three standard water quality assessments, Colilert® , USEPA Method 1603, (modified mTEC) and USEPA Method 1604 (MI), detect different populations of E. coli. Samples were collected from six watersheds and analysed using the three enumeration approaches followed by E. coli isolation and genotyping. Results indicated that the three methods generally produced similar enumeration data across the sites, although there were some differences on a site-by-site basis. The Colilert® method consistently generated the least diverse collection of E. coli genotypes as compared to modified mTEC and MI, with those two methods being roughly equal to each other. Although the three media assessed in this study were designed to enumerate E. coli, the differences in the media composition, incubation temperature, and growth platform appear to have a strong selective influence on the populations of E. coli isolated. This study suggests that standardized methods of enumeration and isolation may be warranted if researchers intend to obtain individual E. coli isolates for further characterization. SIGNIFICANCE AND IMPACT OF THE STUDY: This study characterized the impact of three USEPA-approved Escherichia coli enumeration methods on observed E. coli population diversity in surface water samples. Results indicated that these methods produced similar E. coli enumeration data but were more variable in the diversity of E. coli genotypes observed. Although the three methods enumerate the same species, differences in media composition, growth platform, and incubation temperature likely contribute to the selection of different cultivable populations of E. coli, and thus caution should be used when implementing these methods interchangeably for downstream applications which require cultivated isolates.


Subject(s)
Bacterial Load/methods , Escherichia coli/genetics , Escherichia coli/isolation & purification , Fresh Water/microbiology , Water Microbiology , Water Quality , Bacterial Load/standards , Culture Media/chemistry , DNA Fingerprinting/methods , Genetic Variation , Genotype
4.
J Appl Microbiol ; 115(3): 774-85, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23773226

ABSTRACT

AIMS: The objective of this study was to determine whether varying levels of urbanization influence the dominant bacterial species of mildly resistant (0·03 mmol l(-1) tetracycline) and highly resistant (0·06 mmol l(-1) tetracycline) bacteria in sediment and water. Also, the level of urbanization was further evaluated to determine whether the diversity of tetracycline resistance genes present in the isolates and the capability of transferring their resistance were influenced. METHODS AND RESULTS: Sediment and water samples collected from five sampling sites were plated in triplicate on nutrient agar plates with a mild dose (0·03 mmol l(-1) ) and a high dose (0·06 mmol l(-1) ) of tetracycline. Five colonies from each plate plus an additional five from each triplicate group were randomly selected and isolated on nutrient agar containing 0·03 mmol l(-1) tetracycline (400 isolates). The isolates were identified by 16S rRNA gene sequencing and comparison to GenBank using blast. The isolates were also screened for 15 tetracycline resistance genes using a multiplex PCR assay and their ability to transfer resistance through conjugation experiments using a kanamycin-resistant Escherichia. coli K-12 strain labelled with a green fluorescent protein gene. Results from this study indicate that the dominant resistant organisms in this watershed are Acinetobacter spp., Chryseobacterium spp., Serratia spp., Pseudomonas spp., Aeromonas spp. and E. coli. All of these organisms are Gram negative and are closely related to pathogenic species. A majority of the isolates (66%) were capable of transferring their resistance, and there was a greater incidence of tet resistance transfer with increasing urbanization. Also, it was determined that the dominant resistance genes in the watershed are tet(W) and tet(A). CONCLUSION: Urbanization significantly affected dominant tetracycline-resistant bacteria species, but did not affect dominant resistance genes. There was correlation between increased urbanization with an increase in the ability to transfer tetracycline resistance. This indicates that urban areas may select for bacterial species that are capable of transferring resistance. SIGNIFICANCE AND IMPACT OF STUDY: These results indicate that urbanization influences the occurrence of tetracycline-resistant bacteria and the potential for transfer of resistance genes.


Subject(s)
Bacteria/isolation & purification , Genes, Bacterial , Tetracycline Resistance/genetics , Acinetobacter/drug effects , Acinetobacter/genetics , Aeromonas/drug effects , Aeromonas/genetics , Bacteria/drug effects , Bacteria/genetics , Climate , Escherichia coli/drug effects , Escherichia coli/genetics , Geologic Sediments/microbiology , Pseudomonas/drug effects , Pseudomonas/genetics , Urbanization , Water Microbiology
5.
Environ Monit Assess ; 185(6): 4659-78, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23014925

ABSTRACT

Diffuse sources of surface water pathogens and nutrients can be difficult to isolate in larger river basins. This study used a geographical or nested approach to isolate diffuse sources of Escherichia coli and other water quality constituents in a 145.7-km(2) river basin in south central Texas, USA. Average numbers of E. coli ranged from 49 to 64,000 colony forming units (CFU) per 100 mL depending upon season and stream flow over the 1-year sampling period. Nitrate-N concentrations ranged from 48 to 14,041 µg L(-1) and orthophosphate-P from 27 to 2,721 µg L(-1). High concentrations of nitrate-N, dissolved organic nitrogen, and orthophosphate-P were observed downstream of waste water treatment plants but E. coli values were higher in a watershed draining an older part of the city. Total urban land use explained between 56 and 72 % of the variance in mean annual E. coli values (p < 0.05) in nine hydrologically disconnected creeks. Of the types of urban land use, commercial land use explained most of the variance in E. coli values in the fall and winter. Surface water sodium, alkalinity, and potassium concentrations in surface water were best described by the proportion of commercial land use in the watershed. Based on our nested approach in examining surface water, city officials are able to direct funding to specific areas of the basin in order to mitigate high surface water E. coli numbers and nutrient concentrations.


Subject(s)
Environmental Monitoring/methods , Escherichia coli/growth & development , Rivers/microbiology , Water Microbiology , Water Pollutants/analysis , Escherichia coli/isolation & purification , Rivers/chemistry , Texas , Water Pollution/statistics & numerical data , Water Quality/standards
6.
J Appl Microbiol ; 110(2): 587-96, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21199196

ABSTRACT

AIMS: To monitor microbial community dynamics in a semi-industrial-scale lignocellulosic biofuel reactor system and to improve our understanding of the microbial communities involved in the MixAlco™ biomass conversion process. METHODS AND RESULTS: Reactor microbial communities were characterized at six time points over the course of an 80-day, mesophilic, semi-industrial-scale fermentation using community qPCR and 16S rRNA tag-pyrosequencing. We found the communities to be dynamic, bacterially dominated consortia capable of changing quickly in response to reactor conditions. Clostridia- and Bacteroidetes-like organisms dominated the reactor communities, but ultimately the communities established consortia containing complementary functional capacities for the degradation of lignocellulosic materials. Eighteen operational taxonomic units were found to share strong correlations with reactor acid concentration and may represent taxa integral to fermentor performance. CONCLUSIONS: The results of this study indicate that the emergence of complementary functional classes within the fermentor consortia may be a trait that is consistent across scales, and they suggest that there may be flexibility with respect to the specific identities of the organisms involved in the fermentor's degradation and fermentation processes. SIGNIFICANCE AND IMPACT OF THE STUDY: This study provides new information regarding the composition, dynamics and potential flexibility of the microbial communities associated with the MixAlco™ process and is likely to inform the improvement of this and other applications that employ mixed microbial communities.


Subject(s)
Bacteria/classification , Biofuels , Bioreactors/microbiology , Bacteria/genetics , Bacteria/isolation & purification , Biomass , Fermentation , Industrial Microbiology/instrumentation , Polymerase Chain Reaction
7.
Cytotherapy ; 9(6): 569-76, 2007.
Article in English | MEDLINE | ID: mdl-17882722

ABSTRACT

BACKGROUND: ALDH-bright (ALDH(br)) cell populations sorted from freshly collected umbilical cord blood (UCB) on the basis of their high aldehyde dehydrogenase (ALDH) activity are highly enriched for HPC. HPC with low ALDH activity (ALDH(dim)) are primarily short-term progenitors, whereas progenitors that initiate long-term cultures or establish long-term grafts in xenograft models are ALDH(br). We examined the multilineage hematopoietic and platelet progenitor activities of ALDH(br) cells recovered from cryopreserved UCB units typically employed in the practice of clinical transplantation. METHODS: Frozen UCB units were thawed, washed, immunomagnetically depleted of cells expressing glycophorin A and CD14, reacted for flow cytometric detection of ALDH, and sorted to yield ALDH(br) and ALDH(dim) populations. We measured surface Ag expression and viability of cells in the ALDH(br) and ALDH(dim) populations by flow cytometry and hematopoietic (CFC-H) and megakaryocytic (CFC-Mk) colony-forming cells in each population. RESULTS: ALDH(br) populations isolated from thawed UCB cells were highly enriched for CD34(+) and CD133(+) cells. Flow-sorted ALDH(br) populations were enriched 1116-fold in CFC-H, 10-fold in multilineage GEMM colonies and 2015-fold in CFC-Mk compared with the ALDH(dim) population. All progenitors giving rise to large Mk colonies were derived from ALDH(br) populations. DISCUSSION: ALDH(br) populations recovered from thawed, banked UCB with the method we describe have HPC activity and may be useful in the clinic to facilitate reconstitution of erythroid, myeloid and megakaryocytic blood elements.


Subject(s)
Aldehyde Dehydrogenase/metabolism , Cryopreservation , Fetal Blood/cytology , Fetal Blood/enzymology , Hematopoietic Stem Cells/cytology , Megakaryocytes/cytology , Tissue Banks , Antigens, CD , Cell Separation , Flow Cytometry , Humans
8.
Cytotherapy ; 9(3): 259-74, 2007.
Article in English | MEDLINE | ID: mdl-17464758

ABSTRACT

BACKGROUND: ALDH(br) cells express high aldehyde dehydrogenase (ALDH) activity and have progenitor cell activity in several contexts. We characterized human BM ALDH(br) cells to determine whether cell sorting based on ALDH activity isolates potentially useful populations for cell therapy. METHOD: We measured the expression of ALDH and cell-surface Ag by flow cytometry and compared the ability of sorted ALDH(br), and BM populations remaining after ALDH(br) cells were removed (ALDH(dim) populations), to develop into several cell lineages in culture. RESULTS: The ALDH(br) population comprised 1.2+/-0.8% (mean+/-SD, n=30) nucleated cells and was enriched in cells expressing CD34, CD117, CD105, CD127, CD133 and CD166, and in primitive CD34(+) CD38(-) and CD34(+) CD133(+) progenitors. Most of the CD34(+) and CD133(+) cells were ALDH(dim). ALDH(br) populations had 144-fold more hematopoietic colony-forming activity than ALDH(dim) cells and included all megakaryocyte progenitors. ALDH(br) populations readily established endothelial cell monolayers in cultures. Cells generating endothelial colonies in 7 days were 435-fold more frequent in ALDH(br) than ALDH(dim) populations. CFU-F were 9.5-fold more frequent in ALDH(br) than ALDH(dim) cells, and ALDH(br) cells gave rise to multipotential mesenchymal cell cultures that could be driven to develop into adipocytes, osteoblasts and chondrocytes. DISCUSSION: Hematopoietic, endothelial and mesenchymal progenitor cells can be isolated simultaneously from human BM by cell sorting based on ALDH activity. BM ALDH(br) populations may be useful in several cell therapy applications.


Subject(s)
Aldehyde Dehydrogenase/analysis , Endothelial Cells/cytology , Flow Cytometry/methods , Hematopoietic Stem Cells/cytology , Mesenchymal Stem Cells/cytology , Stem Cells/cytology , Aldehyde Dehydrogenase/metabolism , Cell Culture Techniques , Cell Differentiation , Cell Transplantation , Humans , von Willebrand Factor/analysis
9.
Microb Ecol ; 52(2): 159-75, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16897303

ABSTRACT

Microarray technology has the unparalleled potential to simultaneously determine the dynamics and/or activities of most, if not all, of the microbial populations in complex environments such as soils and sediments. Researchers have developed several types of arrays that characterize the microbial populations in these samples based on their phylogenetic relatedness or functional genomic content. Several recent studies have used these microarrays to investigate ecological issues; however, most have only analyzed a limited number of samples with relatively few experiments utilizing the full high-throughput potential of microarray analysis. This is due in part to the unique analytical challenges that these samples present with regard to sensitivity, specificity, quantitation, and data analysis. This review discusses specific applications of microarrays to microbial ecology research along with some of the latest studies addressing the difficulties encountered during analysis of complex microbial communities within environmental samples. With continued development, microarray technology may ultimately achieve its potential for comprehensive, high-throughput characterization of microbial populations in near real time.


Subject(s)
Ecology/methods , Oligonucleotide Array Sequence Analysis/methods , Soil Microbiology , Bacteria/classification , Bacteria/genetics , Biodiversity , Fungi/classification , Fungi/genetics , Genetic Markers , Phylogeny , RNA, Ribosomal/classification
10.
Appl Microbiol Biotechnol ; 71(5): 748-60, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16292532

ABSTRACT

High levels of nitrate are present in groundwater migrating from the former waste disposal ponds at the Y-12 National Security Complex in Oak Ridge, TN. A field-scale denitrifying fluidized bed reactor (FBR) was designed, constructed, and operated with ethanol as an electron donor for the removal of nitrate. After inoculation, biofilms developed on the granular activated carbon particles. Changes in the bacterial community of the FBR were evaluated with clone libraries (n = 500 partial sequences) of the small-subunit rRNA gene for samples taken over a 4-month start-up period. Early phases of start-up operation were characterized by a period of selection, followed by low diversity and predominance by Azoarcus-like sequences. Possible explanations were high pH and nutrient limitations. After amelioration of these conditions, diversification increased rapidly, with the appearance of Dechloromonas, Pseudomonas, and Hydrogenophaga sequences. Changes in NO3, SO4, and pH also likely contributed to shifts in community composition. The detection of sulfate-reducing-bacteria-like sequences closely related to Desulfovibrio and Desulfuromonas in the FBR have important implications for downstream applications at the field site.


Subject(s)
Bacteria/growth & development , Bioreactors , Ecosystem , Water Pollutants, Chemical/metabolism , Bacteria/classification , Bacteria/genetics , Charcoal , Nitrates/metabolism , Phylogeny , Pseudomonas , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sulfur-Reducing Bacteria , Uranium , Water Purification/methods
11.
Microb Ecol ; 48(1): 90-102, 2004 Jul.
Article in English | MEDLINE | ID: mdl-15085300

ABSTRACT

A study was conducted to determine the diversity of 2-, 3-, and 4-chlorobenzoate (CB) degraders in two pristine soils with similar physical and chemical characteristics. Surface soils were collected from forested sites and amended with 500 microg of 2-, 3-, or 4-CB g(-1) soil. The CB levels and degrader numbers were monitored throughout the study. Degraders were isolated, grouped by DNA fingerprints, identified via 16S rDNA sequences, and screened for plasmids. The CB genes in selected degraders were isolated and/or sequenced. In the Madera soil, 2-CB and 4-CB degraded within 11 and 42 d, respectively, but 3-CB did not degrade. In contrast, 3-CB and 4-CB degraded in the Oversite soil within 14 and 28 d, respectively, while 2-CB did not degrade. Approximately 10(7) CFU g(-1) of degraders were detected in the Madera soil with 2-CB, and the Oversite soil with 3- and 4-CB. No degraders were detected in the Madera soil with 4-CB even though the 4-CB degraded. Nearly all of the 2-CB degraders isolated from the Madera soil were identified as a Burkholderia sp. containing chromosomally encoded degradative genes. In contrast, several different 3- and 4-CB degraders were isolated from the Oversite soil, and their populations changed as CB degradation progressed. Most of these 3-CB degraders were identified as Burkholderia spp. while the majority of 4-CB degraders were identified as Bradyrhizobium spp. Several of the 3-CB degraders contained the degradative genes on large plasmids, and there was variation between the plasmids in different isolates. When a fresh sample of Madera soil was amended with 50, 100, or 200 microg 3-CB g(-1), 3-CB degradation occurred, suggesting that 500 microg 3-CB g(-1) was toxic to the degraders. Also, different 3-CB degraders were isolated from the Madera soil at each of the three lower levels of 3-CB. No 2-CB degradation was detected in the Oversite soil even at lower 2-CB levels. These results indicate that the development of 2-, 3-, and 4-CB degrader populations is site-specific and that 2-, 3-, and 4-CB are degraded by different bacterial populations in pristine soils. These results also imply that the microbial ecology of two soils that develop under similar biotic and abiotic environments can be quite different.


Subject(s)
Bacteria/metabolism , Chlorobenzoates/metabolism , Ecosystem , Phylogeny , Soil Microbiology , Arizona , Bacteria/genetics , Base Sequence , Biodegradation, Environmental , Blotting, Southern , Cluster Analysis , DNA Fingerprinting , DNA Primers , Molecular Sequence Data , Plasmids/genetics , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
12.
Blood ; 97(10): 3004-10, 2001 May 15.
Article in English | MEDLINE | ID: mdl-11342424

ABSTRACT

Paroxysmal nocturnal hemoglobinuria (PNH) is a clonal hematopoietic stem cell disorder characterized by complement-mediated hemolysis due to deficiencies of glycosylphosphatidylinositol-anchored proteins (GPI-APs) in subpopulations of blood cells. Acquired mutations in the X-linked phosphatidylinositol glycan-class A (PIG-A) gene appear to be the characteristic and pathogenetic cause of PNH. To develop a gene therapy approach for PNH, a retroviral vector construct, termed MPIN, was made containing the PIG-A complementary DNA along with an internal ribosome entry site and the nerve growth factor receptor (NGFR) as a selectable marker. MPIN transduction led to efficient and stable PIG-A and NGFR gene expression in a PIG-A-deficient B-cell line (JY5), a PIG-A-deficient K562 cell line, an Epstein-Barr virus-transformed B-cell line (TK-14(-)) established from a patient with PNH, as well as peripheral blood (PB) mononuclear cells from a patient with PNH. PIG-A expression in these cell lines stably restored GPI-AP expression. MPIN was transduced into bone marrow mononuclear cells from a patient with PNH, and myeloid/erythroid colonies and erythroid cells were derived. These transduced erythroid cells restored surface expression of GPI-APs and resistance to hemolysis. These results indicate that MPIN is capable of efficient and stable functional restoration of GPI-APs in a variety of PIG-A-deficient hematopoietic cell types. Furthermore, MPIN also transduced into PB CD34(+) cells from a normal donor, indicating that MPIN can transduce primitive human progenitors. These findings set the stage for determining whether MPIN can restore PIG-A function in multipotential stem cells, thereby providing a potential new therapeutic option in PNH.


Subject(s)
Glycosylphosphatidylinositols/genetics , Hemoglobinuria, Paroxysmal/genetics , Membrane Proteins/genetics , Retroviridae/genetics , Transfection , 3T3 Cells , Animals , B-Lymphocytes/metabolism , Bone Marrow Cells/metabolism , Cell Line , Cell Line, Transformed , Gene Expression , Genetic Vectors , Hematopoietic Stem Cells/metabolism , Hemoglobinuria, Paroxysmal/blood , Hemoglobinuria, Paroxysmal/metabolism , Hemolysis , Herpesvirus 4, Human , Membrane Proteins/deficiency , Membrane Proteins/physiology , Mice , Mutation , Nerve Growth Factor/analysis , Nerve Growth Factor/genetics , Phenotype
13.
Biodegradation ; 12(5): 349-57, 2001.
Article in English | MEDLINE | ID: mdl-11998824

ABSTRACT

Changes in microbial populations were evaluated following inoculation of contaminated soil with a 3-chlorobenzoate degrader. Madera sandy loam was amended with 0, 500, or 1,000 microg 3-chlorobenzoate g(-1) dry soil. Selected microcosms were inoculated with the degrader Comamonas testosteroni BR60. Culturable bacterial degraders were enumerated on minimal salts media containing 3-chlorobenzoate. Culturable heterotrophic bacteria were enumerated on R2A. Isolated degraders were grouped by enterobacterial repetitive intergenic consensus sequence-polymerase chain reaction fingerprints and identified based on 16S ribosomal-DNA sequences. Bioaugmentation increased the rate of degradation at both levels of 3-chlorobenzoate. In both the 500 and 1,000 microg 3-chlorobenzoate g(-1) dry soil inoculated microcosms, degraders increased from the initial inoculum and decreased following degradation of 3-CB. Inoculation delayed the development of indigenous 3-chlorobenzoate degrading populations. It is unclear if inoculation altered the composition of indigenous degrader populations. In the uninoculated soil, degraders increased from undetectable levels to 6.6 x 10(7) colony-forming-units g(-1) dry soil in the 500 microg 3-chlorobenzoate g(-1) dry soil microcosms, but none were detected in the 1,000 microg 3-chlorobenzoate g(-1) dry soil microcosms. Degraders isolated from uninoculated soil were identified as one of two distinct Burkholderia species. In the uninoculated soil, numbers of culturable heterotrophic bacteria initially decreased following addition of 1,000 microg 3-chlorobenzoate g(-1) dry soil. Inoculation with C. testosteroni reduced this negative impact on culturable bacterial numbers. The results indicate that bioaugmentation may not only increase the rate of 3-chlorobenzoate degradation but also reduce the deleterious effects of 3-chlorbenzoate on indigenous soil microbial populations.


Subject(s)
Chlorobenzoates/metabolism , Comamonas testosteroni/metabolism , Soil Microbiology , Biodegradation, Environmental , Colony Count, Microbial , Comamonas testosteroni/genetics , Comamonas testosteroni/growth & development , Plasmids/genetics , Reverse Transcriptase Polymerase Chain Reaction
14.
Appl Environ Microbiol ; 66(8): 3399-407, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10919798

ABSTRACT

A pilot field study was conducted to assess the impact of bioaugmentation with two plasmid pJP4-bearing microorganisms: the natural host, Ralstonia eutropha JMP134, and a laboratory-generated strain amenable to donor counterselection, Escherichia coli D11. The R. eutropha strain contained chromosomal genes necessary for mineralization of 2,4-dichlorophenoxyacetic acid (2,4-D), while the E. coli strain did not. The soil system was contaminated with 2,4-D alone or was cocontaminated with 2,4-D and Cd. Plasmid transfer to indigenous populations, plasmid persistence in soil, and degradation of 2,4-D were monitored over a 63-day period in the bioreactors. To assess the impact of contaminant reexposure, aliquots of bioreactor soil were reamended with additional 2,4-D. Both introduced donors remained culturable and transferred plasmid pJP4 to indigenous recipients, although to different extents. Isolated transconjugants were members of the Burkholderia and Ralstonia genera, suggesting multiple, if not successive, plasmid transfers. Upon a second exposure to 2,4-D, enhanced degradation was observed for all treatments, suggesting microbial adaptation to 2,4-D. Upon reexposure, degradation was most rapid for the E. coli D11-inoculated treatments. Cd did not significantly impact 2,4-D degradation or transconjugant formation. This study demonstrated that the choice of donor microorganism might be a key factor to consider for bioaugmentation efforts. In addition, the establishment of an array of stable indigenous plasmid hosts at sites with potential for reexposure or long-term contamination may be particularly useful.


Subject(s)
2,4-Dichlorophenoxyacetic Acid/metabolism , Conjugation, Genetic , Cupriavidus necator/genetics , Gene Transfer Techniques , Plasmids/genetics , Soil Microbiology , Biodegradation, Environmental , Bioreactors , Burkholderia/genetics , Burkholderia/metabolism , Cadmium , Cupriavidus necator/metabolism , Escherichia coli/genetics , Soil Pollutants/metabolism
15.
Exp Hematol ; 27(8): 1244-54, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10428501

ABSTRACT

In this report, we sought to optimize gene transfer into primitive human umbilical cord blood (UCB) cells. Initially, we found that fresh UCB isolated with the CD34brCD38 CD33 phenotype were highly enriched for hematopoietic progenitors detected in extended long-term cultures (8-week LTCs). In addition, following ex vivo gene transfer, this population possessed virtually all the 8-week LTC activity of the cultured cells. A multiparameter FACS assay was developed to efficiently screen the effects of alternative retroviral vector gene transfer procedures on the transduction efficiency and maintenance of CD34brCD38 CD33 cells. Proliferation of the CD34brCD38 CD33 cells was found to be a prerequisite for efficient transduction. However, in all conditions tested, proliferation of the CD34brCD38 CD33 cells was associated with a progressive loss of primitive cell properties including a reduction in CD34 expression, an increase in CD38/CD33 expression, and a decline in the ability to sustain 8-week LTCs. These observations indicate that it will be necessary to define conditions that more effectively support the self-renewal capacity of CD34brCD38 CD33 cells to optimize retroviral vector gene transfer in these cells. Evaluating these conditions and reagents will be facilitated by the multiparameter FACS assay described in this report.


Subject(s)
Cell Separation/methods , Fetal Blood/cytology , Flow Cytometry/methods , Genetic Therapy/methods , Genetic Vectors/genetics , Hematopoietic Stem Cells/metabolism , Receptors, Nerve Growth Factor/genetics , Retroviridae/genetics , ADP-ribosyl Cyclase , ADP-ribosyl Cyclase 1 , Antigens, CD/analysis , Antigens, CD34/analysis , Antigens, Differentiation/analysis , Antigens, Differentiation, Myelomonocytic/analysis , Cell Culture Techniques/methods , Cells, Cultured , Genes, Reporter , Hematopoietic Cell Growth Factors/pharmacology , Humans , Membrane Glycoproteins , NAD+ Nucleosidase/analysis , Receptors, Nerve Growth Factor/biosynthesis , Recombinant Fusion Proteins/biosynthesis , Sialic Acid Binding Ig-like Lectin 3 , Transfection
16.
Ultrasonics ; 36(1-5): 689-93, 1998 Feb.
Article in English | MEDLINE | ID: mdl-9651598

ABSTRACT

A technique for producing strong focused negative pressure waves in water is described. The method is based on the phase inversion of the planar shock wave from an electromagnetic transducer. This is achieved by reflection and focusing at a pressure release boundary. The acoustic concentrator has a phase inverting central element and a phase maintaining annular mirror. Focal pressures of approximately -16 MPa from an initial +5 MPa EMAT source have been measured and the focal volume was found to be approximately the same as that obtained with a conventional ultrasonic lens. The electromagnetic transducer and the parabolic concentrator is an excellent source of cavitation bubbles in water. The focused negative wave has been observed using high speed laser-lit Schlieren photography.


Subject(s)
High-Energy Shock Waves , Ultrasonics , Acoustics , Electromagnetic Phenomena , Humans , Lasers , Lenses , Lithotripsy , Photography/methods , Pressure , Transducers , Water
17.
Exp Hematol ; 26(4): 288-98, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9546311

ABSTRACT

Retroviral vector gene transfer strategies are currently being developed to treat a variety of hematopoietic disorders. To date, genetic modification of human pluripotent hematopoietic stem cells has been inefficient. In the present study we developed reagents and procedures for rapidly screening retroviral vector gene transfer conditions using a multiparameter fluorescence-activated cell sorting (FACS) assay. To identify transduced cells using FACS analysis, we developed a retroviral vector, termed MN, which stably expressed high levels of a truncated version of the low-affinity nerve growth factor receptor (LNGFR). In addition, procedures were developed for enriching CD34+ cells from cryopreserved umbilical cord blood. These cells were transduced with MN and evaluated using multiparameter FACS analysis for expression of CD34, CD38, and LNGFR. Stem cell maintenance was determined by measuring the CD34hi and CD34hiCD38lo/- cells remaining after ex vivo gene transfer. Gene transfer into these cells was measured by evaluating cells expressing high levels of LNGFR. Initial studies with this assay and with in vitro functional assays indicated that retroviral gene transfer following pre-incubation with a variety of cytokines in serum containing conditions resulted in 1) poor maintenance of hematopoietic stem cells and 2) gene transfer predominantly in relatively mature cells. When gene transfer in serum-free conditions was performed, some improvement was observed in the maintenance of cells retaining primitive immunophenotypes with no reduction in the gene transfer efficiency. The MN vector and multiparameter FACS analysis will be useful in efficiently screening ongoing efforts designed to improve stem cell gene transfer.


Subject(s)
Antigens, CD , Fetal Blood/cytology , Flow Cytometry , Gene Transfer Techniques , Genetic Vectors , Hematopoietic Stem Cells/metabolism , Retroviridae/genetics , ADP-ribosyl Cyclase , ADP-ribosyl Cyclase 1 , Antigens, CD34/analysis , Antigens, Differentiation/analysis , Blood , Cell Separation , Cryopreservation , Hematopoietic Stem Cells/immunology , Humans , Immunophenotyping , Membrane Glycoproteins , NAD+ Nucleosidase/analysis , Receptors, Nerve Growth Factor/genetics
19.
J Drug Educ ; 24(3): 207-17, 1994.
Article in English | MEDLINE | ID: mdl-7844694

ABSTRACT

The Stanislaus Chemical Effects Survey, which contains the names of twenty-four substances and asks subjects to rate the relative harm and benefit of each to society, was given to male and female undergraduates in 1985 and 1992. Factor analysis of the responses from each sample were done separately and then a comparison was made of the resulting factors. Fifteen of the twenty-four drugs retained their approximate same position in the structure of drug attitudes between the two samples. Attitudes about three substances, tobacco, oral contraceptives, and PCP, notably appeared to have undergone significant shifts. Discriminant analysis revealed significant differences between the two samples, between males and females regardless of year, and an interaction between year and gender. Findings suggest that attitudes remain conservative about drugs in general and that public policies may be contributing to the shifts in attitudes seen.


Subject(s)
Attitude to Health , Substance-Related Disorders/prevention & control , Adult , Discriminant Analysis , Factor Analysis, Statistical , Female , Humans , Male , Sampling Studies , Substance-Related Disorders/epidemiology
20.
J Pers Assess ; 49(2): 146-9, 1985 Apr.
Article in English | MEDLINE | ID: mdl-16367480

ABSTRACT

Four new MMPI Scales were constructed to identify Eysenck's personality factors of psychoticism, extraversion, and neuroticism as well as a lie score. The scales showed good construct validities against the Eysenck Personality Questionnaire and the Friedman Overlap Scales developed from items in the MMPI. The study also supported the construct validity of the Friedman overlap scales.

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