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1.
Environ Sci Pollut Res Int ; 31(11): 16150-16163, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38319419

ABSTRACT

Understanding anaerobic biodegradation of ether oxygenates beyond MTBE in groundwater is important, given that it is replaced by ETBE as a gasoline additive in several regions. The lack of studies demonstrating anaerobic biodegradation of ETBE, and its product TBA, reflects the relative resistance of ethers and alcohols with a tertiary carbon atom to enzymatic attack under anoxic conditions. Anaerobic ETBE- or TBA-degrading microorganisms have not been characterized. Only one field study suggested anaerobic ETBE biodegradation. Anaerobic (co)metabolism of ETBE or TBA was reported in anoxic microcosms, indicating their biodegradation potential in anoxic groundwater systems. Non-isotopic methods, such as the detection of contaminant loss, metabolites, or ETBE- and TBA-degrading bacteria are not sufficiently sensitive to track anaerobic biodegradation in situ. Compound- and position-specific stable isotope analysis provides a means to study MTBE biodegradation, but isotopic fractionation of ETBE has only been studied with a few aerobic bacteria (εC -0.7 to -1.7‰, εH -11 to -73‰) and at one anoxic field site (δ2H-ETBE +14‰). Similarly, stable carbon isotope enrichment (δ13C-TBA +6.5‰) indicated TBA biodegradation at an anoxic field site. CSIA and PSIA are promising methods to detect anaerobic ETBE and TBA biodegradation but need to be investigated further to assess their full potential at field scale.


Subject(s)
Ethyl Ethers , Groundwater , Methyl Ethers , tert-Butyl Alcohol , Anaerobiosis , Biodegradation, Environmental , Carbon Isotopes/analysis , Carbon
2.
ISME Commun ; 3(1): 68, 2023 Jul 10.
Article in English | MEDLINE | ID: mdl-37423910

ABSTRACT

Ocean plastic pollution is a severe environmental problem but most of the plastic that has been released to the ocean since the 1950s is unaccounted for. Although fungal degradation of marine plastics has been suggested as a potential sink mechanism, unambiguous proof of plastic degradation by marine fungi, or other microbes, is scarce. Here we applied stable isotope tracing assays with 13C-labeled polyethylene to measure biodegradation rates and to trace the incorporation of plastic-derived carbon into individual cells of the yeast Rhodotorula mucilaginosa, which we isolated from the marine environment. 13C accumulation in the CO2 pool during 5-day incubation experiments with R. mucilaginosa and UV-irradiated 13C-labeled polyethylene as a sole energy and carbon source translated to degradation rates of 3.8% yr-1 of the initially added substrate. Furthermore, nanoSIMS measurements revealed substantial incorporation of polyethylene-derived carbon into fungal biomass. Our results demonstrate the potential of R. mucilaginosa to mineralize and assimilate carbon from plastics and suggest that fungal plastic degradation may be an important sink for polyethylene litter in the marine environment.

3.
J Environ Qual ; 52(1): 74-87, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36368314

ABSTRACT

Mitigation measures are needed to prevent large loads of phosphate originating in agriculture from reaching surface waters. Iron-coated sand (ICS) is a residual product from drinking water production. It has a high phosphate adsorption capacity and can be placed around tile drains, taking no extra space, which increases the farmers' acceptance. The main concern regarding the use of ICS filters below groundwater level is that limited oxygen supply and high organic matter concentrations may lead to the reduction and dissolution of iron (hydr)oxides present and the release of previously adsorbed phosphate. This study aimed to investigate phosphate adsorption on ICS at the onset of iron reduction. First, we investigated whether simultaneous metal reduction and phosphate adsorption were relevant at two field sites in the Netherlands that use ICS filters around tile drains. Second, the onset of microbially mediated reduction of ICS in drainage water was mimicked in complementary laboratory microcosm experiments by varying the intensity of reduction through controlling the oxygen availability and the concentration of degradable organic matter. After 3 yr, ICS filters in the field removed phosphorus under low redox conditions. Over 45 d, the microbial reduction of manganese and iron oxides did not lead to phosphate release, confirming field observations. Electron microscopy and X-ray absorption spectroscopy did not evince systematic structural or compositional changes; only under strongly reducing conditions did iron sulfides form in small percentages in the outer layer of the iron coating. Our results suggest that detrimental effects only become relevant after long periods of operation.


Subject(s)
Iron , Water Pollutants, Chemical , Iron/chemistry , Phosphorus/chemistry , Sand , Adsorption , Oxides , Phosphates , Water Pollutants, Chemical/chemistry
4.
Water Res ; 221: 118767, 2022 Aug 01.
Article in English | MEDLINE | ID: mdl-35777321

ABSTRACT

Biodegradation of pollutants is a sustainable and cost-effective solution to groundwater pollution. Here, we investigate microbial populations involved in biodegradation of poly-contaminants in a pipeline for heavily contaminated groundwater. Groundwater moves from a polluted park to a treatment plant, where an aerated bioreactor effectively removes the contaminants. While the biomass does not settle in the reactor, sediment is collected afterwards and used to seed the new polluted groundwater via a backwash cycle. The pipeline has successfully operated since 1999, but the biological components in the reactor and the contaminated park groundwater have never been described. We sampled seven points along the pipeline, representing the entire remediation process, and characterized the changing microbial communities using genome-resolved metagenomic analysis. We assembled 297 medium- and high-quality metagenome-assembled genome sequences representing on average 46.3% of the total DNA per sample. We found that the communities cluster into two distinct groups, separating the anaerobic communities in the park groundwater from the aerobic communities inside the plant. In the park, the community is dominated by members of the genus Sulfuricurvum, while the plant is dominated by generalists from the order Burkholderiales. Known aromatic compound biodegradation pathways are four times more abundant in the plant-side communities compared to the park-side. Our findings provide a genome-resolved portrait of the microbial community in a highly effective groundwater treatment system that has treated groundwater with a complex contamination profile for two decades.


Subject(s)
Groundwater , Microbiota , Water Pollutants, Chemical , Biodegradation, Environmental , Metagenome , Water Pollutants, Chemical/analysis
5.
J Contam Hydrol ; 248: 104006, 2022 06.
Article in English | MEDLINE | ID: mdl-35439686

ABSTRACT

The anaerobic degradation of aromatic hydrocarbons in a plume originating from a Pintsch gas tar-DNAPL zone was investigated using molecular, isotopic- and microbial analyses. Benzene concentrations diminished at the relatively small meter scale dimensions of the nitrate reducing plume fringe. The ratio of benzene to toluene, ethylbenzene, xylenes and naphthalene (BTEXN) in the fringe zone compared to the plume zone, indicated relatively more loss of benzene in the fringe zone than TEXN. This was substantiated by changes in relative concentrations of BTEXN, and multi-element compound specific isotope analysis for δ2H and δ13C. This was supported by the presence of (abcA) genes, indicating the presumed benzene carboxylase enzyme in the nitrate-reducing plume fringe. Biodegradation of most hydrocarbon contaminants at iron reducing conditions in the plume core, appears to be quantitatively of greater significance due to the large volume of the plume core, rather than relatively faster biodegradation under nitrate reducing conditions at the smaller volume of the plume fringe. Contaminant concentration reductions by biodegradation processes were shown to vary distinctively between the source, plume (both iron-reducing) and fringe (nitrate-reducing) zones of the plume. High anaerobic microbial activity was detected in the plume zone as well as in the dense non aqueous phase liquid (DNAPL) containing source zone. Biodegradation of most, if not all, other water-soluble Pintsch gas tar aromatic hydrocarbon contaminants occur at the relatively large dimensions of the anoxic plume core. The highest diversity and concentrations of metabolites were detected in the iron-reducing plume core, where the sum of parent compounds of aromatic hydrocarbons was greater than 10 mg/L. The relatively high concentrations of metabolites suggest a hot spot for anaerobic degradation in the core of the plume downgradient but relatively close to the DNAPL containing source zone.


Subject(s)
Hydrocarbons, Aromatic , Water Pollutants, Chemical , Anaerobiosis , Benzene/analysis , Benzene Derivatives/analysis , Biodegradation, Environmental , Hydrocarbons , Hydrocarbons, Aromatic/analysis , Iron/analysis , Nitrates/analysis , Toluene/analysis , Water Pollutants, Chemical/analysis , Xylenes
7.
Commun Biol ; 4(1): 530, 2021 05 05.
Article in English | MEDLINE | ID: mdl-33953314

ABSTRACT

A key question in microbial ecology is what the driving forces behind the persistence of large biodiversity in natural environments are. We studied a microbial community with more than 100 different types of species which evolved in a 15-years old bioreactor with benzene as the main carbon and energy source and nitrate as the electron acceptor. Using genome-centric metagenomics plus metatranscriptomics, we demonstrate that most of the community members likely feed on metabolic left-overs or on necromass while only a few of them, from families Rhodocyclaceae and Peptococcaceae, are candidates to degrade benzene. We verify with an additional succession experiment using metabolomics and metabarcoding that these few community members are the actual drivers of benzene degradation. As such, we hypothesize that high species richness is maintained and the complexity of a natural community is stabilized in a controlled environment by the interdependencies between the few benzene degraders and the rest of the community members, ultimately resulting in a food web with different trophic levels.


Subject(s)
Bacteria/classification , Benzene/metabolism , Biodegradation, Environmental , Biodiversity , Metagenome , Nitrates/metabolism , Bacteria/genetics , Bacteria/isolation & purification , Bacteria/metabolism
8.
Sci Rep ; 10(1): 10945, 2020 07 02.
Article in English | MEDLINE | ID: mdl-32616793

ABSTRACT

We studied the fragmentation of conventional thermoplastic and compostable plastic items in a laboratory seawater microcosm. In the microcosm, polyurethane foams, cellulose acetate cigarette filters, and compostable polyester and polylactic acid items readily sank, whereas polyethylene air pouches, latex balloons, polystyrene foams and polypropylene cups remained afloat. Microbial biofilms dominated by Cyanobacteria, Proteobacteria, Planctomycetes and Bacteriodetes grew on the plastics, and caused some of the polyethylene items to sink to the bottom. Electrical resistances (ER) of plastic items decreased as function of time, an indication that seawater had penetrated into microscopic crevices in the plastic that had developed over time. Rate constants for ER decrease in polyethylene items in the microcosm were similar to tensile elongation decrease of polyethylene sheets floating in sea, measured previously by others. Weight loss of plastic items was ≤ 1% per year for polyethylene, polystyrene and polypropylene, 3-5% for latex, polyethylene terephthalate and polyurethane, 15% for cellulose acetate, and 7-27% for polyester and polylactic acid compostable bags. The formation of microplastics observed in the microcosm was responsible for at least part of the weight loss. This study emphasizes the need to obtain experimental data on plastic litter degradation under conditions that are realistic for marine environments.

9.
J Environ Qual ; 48(2): 394-402, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30951110

ABSTRACT

Denitrifying bioreactors are dependent on organic matter supply as a substrate for effective NO removal. In this study, the difference in removal efficiency and side effects when using different organic matter sources and dosing strategies was tested in two field experiments. The organic matter sources tested were woodchips and ethanol. The effect of woodchips was tested using woodchip-enveloped drains. Ethanol was supplied to a flow-through reactor by passive dosing by diffusion through silicone tubing. The woodchip-enveloped drains showed a removal efficiency of 80% during the first year of application, but this rate decreased during the second and third years of application, coinciding with a decrease in dissolved organic C and an increase in redox potential. The removal efficiency was higher and remained higher over a longer period of time when the drains were installed more deeply. The flow-through reactor with ethanol could lead to a higher removal efficiency (up to 95%) at higher hydraulic retention time (HRT, 0.1 d) than the woodchip-enveloped drains (HRT = 5 d). Passive dosing of organic substrates is simple, needs little maintenance and no energy, and can be performed independent of electricity. A denitrifying bioreactor with a controlled drainage inlet and outlet is a promising setup for optimizing N removal and minimizing side effects.


Subject(s)
Bioreactors , Nitrates/analysis , Non-Point Source Pollution/prevention & control , Waste Disposal, Fluid/methods , Water Pollutants/analysis , Denitrification
10.
Water Res ; 148: 314-323, 2019 01 01.
Article in English | MEDLINE | ID: mdl-30391860

ABSTRACT

EtBE is a fuel oxygenate that is synthesized from (bio)ethanol and fossil-based isobutylene, and replaces the fossil-based MtBE. Biodegradation of EtBE to harmless metabolites or end products can reduce the environmental and human health risks after accidental release. In this study, an algal-bacterial culture enriched from contaminated groundwater was used to (i) assess the potential for EtBE degradation, (ii) resolve the EtBE degradation pathway and (iii) characterize the phylogenetic composition of the bacterial community involved in EtBE degradation in contaminated groundwater. In an unamended microcosm, algal growth was observed after eight weeks when exposed to a day-night light cycle. In the fed-batch reactor, oxygen produced by the algae Scenedesmus and Chlorella was used by bacteria to degrade 50 µM EtBE replenishments with a cumulative total of 1250 µM in a day/night cycle (650 lux), over a period of 913 days. The microbial community in the fed-batch reactor degraded EtBE, using a P450 monooxygenase and 2-hydroxyisobutyryl-CoA mutase, to tert-butyl alcohol (TBA), ethanol and CO2 as determined using 13C nuclear magnetic resonance spectroscopy (NMR) and gas chromatography. Stable isotope probing (SIP) with 13C6 labeled EtBE in a fed-batch vessel showed no significant difference in community profiles of the 13C and 12C enriched DNA fractions, with representatives of the families Halomonadaceae, Shewanellaceae, Rhodocyclaceae, Oxalobacteraceae, Comamonadaceae, Sphingomonadaceae, Hyphomicrobiaceae, Candidatus Moranbacteria, Omnitrophica, Anaerolineaceae, Nocardiaceae, and Blastocatellaceae. This is the first study describing micro-oxic degradation of EtBE by an algal-bacterial culture. This algal-bacterial culture has advantages compared with conventional aerobic treatments: (i) a lower risk of EtBE evaporation and (ii) no need for external oxygen supply in the presence of light. This study provides novel leads towards future possibilities to implement algal-bacterial consortia in field-scale groundwater or wastewater treatment.


Subject(s)
Chlorella , Groundwater , Methyl Ethers , Biodegradation, Environmental , Ethyl Ethers , Humans , Phylogeny , tert-Butyl Alcohol
11.
Sci Rep ; 8(1): 4490, 2018 03 14.
Article in English | MEDLINE | ID: mdl-29540736

ABSTRACT

In this study, we report transcription of genes involved in aerobic and anaerobic benzene degradation pathways in a benzene-degrading denitrifying continuous culture. Transcripts associated with the family Peptococcaceae dominated all samples (21-36% relative abundance) indicating their key role in the community. We found a highly transcribed gene cluster encoding a presumed anaerobic benzene carboxylase (AbcA and AbcD) and a benzoate-coenzyme A ligase (BzlA). Predicted gene products showed >96% amino acid identity and similar gene order to the corresponding benzene degradation gene cluster described previously, providing further evidence for anaerobic benzene activation via carboxylation. For subsequent benzoyl-CoA dearomatization, bam-like genes analogous to the ones found in other strict anaerobes were transcribed, whereas gene transcripts involved in downstream benzoyl-CoA degradation were mostly analogous to the ones described in facultative anaerobes. The concurrent transcription of genes encoding enzymes involved in oxygenase-mediated aerobic benzene degradation suggested oxygen presence in the culture, possibly formed via a recently identified nitric oxide dismutase (Nod). Although we were unable to detect transcription of Nod-encoding genes, addition of nitrite and formate to the continuous culture showed indication for oxygen production. Such an oxygen production would enable aerobic microbes to thrive in oxygen-depleted and nitrate-containing subsurface environments contaminated with hydrocarbons.


Subject(s)
Anaerobiosis , Benzene/metabolism , Metabolic Networks and Pathways , Microbial Consortia , Nitrates/metabolism , Peptococcaceae/metabolism , Biodegradation, Environmental , Biofilms , Gene Expression Profiling , Gene Expression Regulation, Bacterial , Oxidation-Reduction , Oxygen/metabolism , Peptococcaceae/genetics , Peptococcaceae/growth & development , Transcriptome
12.
Appl Microbiol Biotechnol ; 102(7): 3387-3397, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29478141

ABSTRACT

The increasing use of biobased fuels and fuel additives can potentially change the typical fuel-related contamination in soil and groundwater. Anaerobic biotransformation of the biofuel additive ethyl tert-butyl ether (EtBE), as well as of methyl tert-butyl ether (MtBE), benzene, and tert-butyl alcohol (TBA, a possible oxygenate metabolite), was studied at an industrially contaminated site and in the laboratory. Analysis of groundwater samples indicated that in the field MtBE was degraded, yielding TBA as major product. In batch microcosms, MtBE was degraded under different conditions: unamended control, with medium without added electron acceptors, or with ferrihydrite or sulfate (with or without medium) as electron acceptor, respectively. Degradation of EtBE was not observed under any of these conditions tested. TBA was partially depleted in parallel with MtBE. Results of microcosm experiments with MtBE substrate analogues, i.e., syringate, vanillate, or ferulate, were in line with the hypothesis that the observed TBA degradation is a cometabolic process. Microcosms with ferulate, syringate, isopropanol, or diethyl ether showed EtBE depletion up to 86.5% of the initial concentration after 83 days. Benzene was degraded in the unamended controls, with medium without added electron acceptors and with ferrihydrite, sulfate, or chlorate as electron acceptor, respectively. In the presence of nitrate, benzene was only degraded after addition of an anaerobic benzene-degrading community. Nitrate and chlorate hindered MtBE, EtBE, and TBA degradation.


Subject(s)
Biodegradation, Environmental , Industrial Microbiology/methods , Water Pollutants, Chemical/metabolism , Anaerobiosis , Ethyl Ethers/metabolism , Methyl Ethers/metabolism , Oxidation-Reduction , tert-Butyl Alcohol/metabolism
13.
Appl Microbiol Biotechnol ; 101(12): 5175-5188, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28321487

ABSTRACT

Benzene is an aromatic compound and harmful for the environment. Biodegradation of benzene can reduce the toxicological risk after accidental or controlled release of this chemical in the environment. In this study, we further characterized an anaerobic continuous biofilm culture grown for more than 14 years on benzene with nitrate as electron acceptor. We determined steady state degradation rates, microbial community composition dynamics in the biofilm, and the initial anaerobic benzene degradation reactions. Benzene was degraded at a rate of 0.15 µmol/mg protein/day and a first-order rate constant of 3.04/day which was fourfold higher than rates reported previously. Bacteria belonging to the Peptococcaceae were found to play an important role in this anaerobic benzene-degrading biofilm culture, but also members of the Anaerolineaceae were predicted to be involved in benzene degradation or benzene metabolite degradation based on Illumina MiSeq analysis of 16S ribosomal RNA genes. Biomass retention in the reactor using a filtration finger resulted in reduction of benzene degradation capacity. Detection of the benzene carboxylase encoding gene, abcA, and benzoic acid in the culture vessel indicated that benzene degradation proceeds through an initial carboxylation step.


Subject(s)
Bacteria/metabolism , Benzene/metabolism , Biodegradation, Environmental , Biofilms/growth & development , Denitrification , Microbial Consortia/physiology , Anaerobiosis , Bacteria/classification , Bacteria/drug effects , Bacteria/genetics , Benzene/pharmacology , Benzoic Acid/analysis , Biofilms/drug effects , Culture Media/chemistry , Microbial Consortia/drug effects , Microbial Consortia/genetics , Nitrates/metabolism , Peptococcaceae/classification , Peptococcaceae/genetics , Peptococcaceae/isolation & purification , Peptococcaceae/metabolism , RNA, Ribosomal, 16S/genetics
14.
PLoS One ; 8(6): e66971, 2013.
Article in English | MEDLINE | ID: mdl-23825601

ABSTRACT

The genomes of the Betaproteobacteria Alicycliphilus denitrificans strains BC and K601(T) have been sequenced to get insight into the physiology of the two strains. Strain BC degrades benzene with chlorate as electron acceptor. The cyclohexanol-degrading denitrifying strain K601(T) is not able to use chlorate as electron acceptor, while strain BC cannot degrade cyclohexanol. The 16S rRNA sequences of strains BC and K601(T) are identical and the fatty acid methyl ester patterns of the strains are similar. Basic Local Alignment Search Tool (BLAST) analysis of predicted open reading frames of both strains showed most hits with Acidovorax sp. JS42, a bacterium that degrades nitro-aromatics. The genomes include strain-specific plasmids (pAlide201 in strain K601(T) and pAlide01 and pAlide02 in strain BC). Key genes of chlorate reduction in strain BC were located on a 120 kb megaplasmid (pAlide01), which was absent in strain K601(T). Genes involved in cyclohexanol degradation were only found in strain K601(T). Benzene and toluene are degraded via oxygenase-mediated pathways in both strains. Genes involved in the meta-cleavage pathway of catechol are present in the genomes of both strains. Strain BC also contains all genes of the ortho-cleavage pathway. The large number of mono- and dioxygenase genes in the genomes suggests that the two strains have a broader substrate range than known thus far.


Subject(s)
Comamonadaceae/genetics , Comamonadaceae/physiology , Genomics , Base Sequence , Chlorates/metabolism , Comamonadaceae/metabolism , Genome, Bacterial/genetics , Hydrocarbons, Alicyclic/metabolism , Nitrates/metabolism , Oxygen/metabolism , Species Specificity
15.
Environ Microbiol ; 14(5): 1171-81, 2012 May.
Article in English | MEDLINE | ID: mdl-22296107

ABSTRACT

An anaerobic microbial community was enriched in a chemostat that was operated for more than 8 years with benzene and nitrate as electron acceptor. The coexistence of multiple species in the chemostat and the presence of a biofilm, led to the hypothesis that benzene-degrading species coexist in a syntrophic interaction, and that benzene can be degraded in syntrophy by consortia with various electron acceptors in the same culture. The benzene-degrading microorganisms were identified by DNA-stable isotope probing with [U-(13) C]-labelled benzene, and the effect of different electron donors and acceptors on benzene degradation was investigated. The degradation rate constant of benzene with nitrate (0.7 day(-1) ) was higher than reported previously. In the absence of nitrate, the microbial community was able to use sulfate, chlorate or ferric iron as electron acceptor. Bacteria belonging to the Peptococcaceae were identified as dominant benzene consumers, but also those related to Rhodocyclaceae and Burkholderiaceae were found to be associated with the anaerobic benzene degradation process. The benzene degradation activity in the chemostat was associated with microbial growth in biofilms. This, together with the inhibiting effect of hydrogen and the ability to degrade benzene with different electron acceptors, suggests that benzene was degraded via a syntrophic process.


Subject(s)
Benzene/metabolism , Peptococcaceae/physiology , Anaerobiosis , Burkholderiaceae/metabolism , Burkholderiaceae/physiology , Chlorates/metabolism , Nitrates/metabolism , Peptococcaceae/metabolism , Rhodocyclaceae/metabolism , Rhodocyclaceae/physiology , Sulfates/metabolism
16.
J Bacteriol ; 193(18): 5028-9, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21742888

ABSTRACT

Alicycliphilus denitrificans strain BC and A. denitrificans strain K601(T) degrade cyclic hydrocarbons. These strains have been isolated from a mixture of wastewater treatment plant material and benzene-polluted soil and from a wastewater treatment plant, respectively, suggesting their role in bioremediation of soil and water. Although the strains are phylogenetically closely related, there are some clear physiological differences. The hydrocarbon cyclohexanol, for example, can be degraded by strain K601(T) but not by strain BC. Furthermore, both strains can use nitrate and oxygen as an electron acceptor, but only strain BC can use chlorate as electron acceptor. To better understand the nitrate and chlorate reduction mechanisms coupled to the oxidation of cyclic compounds, the genomes of A. denitrificans strains BC and K601(T) were sequenced. Here, we report the complete genome sequences of A. denitrificans strains BC and K601(T).


Subject(s)
Comamonadaceae/genetics , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Genome, Bacterial , Sequence Analysis, DNA , Biotransformation , Chlorates , Comamonadaceae/isolation & purification , Comamonadaceae/metabolism , Hydrocarbons, Cyclic/metabolism , Molecular Sequence Data , Nitrates/metabolism , Soil Microbiology , Soil Pollutants/metabolism , Water Microbiology , Water Pollutants, Chemical/metabolism
17.
Ground Water ; 49(1): 12-9, 2011.
Article in English | MEDLINE | ID: mdl-21039452

ABSTRACT

Objectives of this work are to investigate effects of pH and ionic strength (IS) on virus transport in saturated soil and to develop a quantitative relationship for these effects. A series of 50-cm column experiments with clean quartz sand under saturated conditions and with pH values of 5, 6, 7, 8, and IS values of 1, 10, and 20 mM were conducted. Bacteriophage PRD1 was used as a model virus. Applying a one-site kinetic model, attachment, detachment, and inactivation rate coefficients were determined from fitting breakthrough curves using the software package Hydrus-1D. Attachment rate coefficients increased with decreasing pH and increasing IS, in agreement with DLVO theory. Sticking efficiencies were calculated from the attachment rate coefficients and used to develop an empirical formula for sticking efficiency as a function of pH and IS. This relationship is applicable under unfavorable conditions for virus attachment. We compared sticking efficiencies predicted by the empirical formula with those from field and column experiments. Within the calibrated range of pH and IS, the predicted and observed sticking efficiencies are in reasonable agreement for bacteriophages PRD1 and MS2. However, the formula significantly overestimates sticking efficiencies for IS higher than 100 mM. In addition, it performs less well for viruses with different surface reactivity than PRD1 and MS2. Effects of pH and IS on detachment and inactivation rate coefficients were also investigated but the experimental results do not allow constraining these parameters with sufficient certainty.


Subject(s)
Bacteriophage PRD1/physiology , Environmental Monitoring , Hydrogen-Ion Concentration , Osmolar Concentration , Water Microbiology , Water Movements
18.
FEMS Microbiol Ecol ; 74(1): 72-82, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20618856

ABSTRACT

River systems are exposed to anthropogenic disturbances, including chemical pollution and eutrophication. This may affect the phylogenetic diversity as well as the abundance of various functional groups within sediment-associated microbial communities. To address such potential effects, mesocosms filled with Ebro delta sediment covered with river water were exposed to chlorinated organic compounds or to a high nutrient concentration as used for fertilization. Changes in the abundance of selected functional microbial groups, i.e. total aerobes, nitrate, sulfate and iron reducers, organohalide-respiring microorganisms as well as methanogens, were examined using culture-dependent most probable number and culture-independent PCR methods targeting phylogenetic as well as functional gene markers. It was concluded that the abundance of functional groups was neither affected by pollution with 1,2-dichloroethane and tetrachloroethene nor by elevated nutrient loads, although changes in the bacterial community composition were observed using 16S rRNA gene-targeted fingerprint techniques. This study reinforced the notion that complementary culture-dependent and molecular methods, focusing on different fractions of the microbial community (cultivable, active or total), should be used in combination for a comprehensive description of phylogenetic diversity and functional potential.


Subject(s)
Bacteria/classification , Biota , Geologic Sediments/microbiology , Rivers/microbiology , Water Pollution, Chemical , Bacteria/genetics , DNA Fingerprinting , DNA, Bacterial/genetics , Ethylene Dichlorides/analysis , Phylogeny , RNA, Ribosomal, 16S/genetics , Spain , Tetrachloroethylene/analysis
19.
Appl Environ Microbiol ; 76(3): 843-50, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20008170

ABSTRACT

Quantitative analysis of genes that code for Dehalococcoides 16S rRNA and chloroethene-reductive dehalogenases TceA, VcrA, and BvcA was done on groundwater sampled from 150 monitoring wells spread over 11 chlorinated ethene polluted European locations. Redundancy analysis was used to relate molecular data to geochemical conditions. Dehalococcoides 16S rRNA- and vinyl chloride (VC)-reductase genes were present at all tested locations in concentrations up to 10(6) gene copies per ml of groundwater. However, differences between and also within locations were observed. Variation in Dehalococcoides 16S rRNA gene copy numbers were most strongly correlated to dissolved organic carbon concentration in groundwater and to conditions appropriate for biodegradation of chlorinated ethenes (U.S. Environmental Protection Agency score). In contrast, vcrA gene copy numbers correlated most significantly to VC and chlorinated ethene concentrations. Interestingly, bvcA and especially tceA were more correlated with oxidizing conditions. In groundwater microcosms, dechlorination of 1 mM VC was correlated to an increase of vcrA and/or bvcA gene copies by 2 to 4 orders of magnitude. Interestingly, in 34% of the monitoring wells and in 40% of the active microcosms, the amount of individual VC-reductase gene copies exceeded that of Dehalococcoides 16S rRNA gene copies. It is concluded that the geographical distribution of the genes was not homogeneous, depending on the geochemical conditions, whereby tceA and bvcA correlated to more oxidized conditions than Dehalococcoides 16S rRNA and vcrA. Because the variation in VC-reductase gene numbers was not directly correlated to variation in Dehalococcoides spp., VC-reductase genes are better monitoring parameters for VC dechlorination capacity than Dehalococcoides spp.


Subject(s)
Chloroflexi/genetics , Oxidoreductases/genetics , RNA, Ribosomal, 16S/genetics , Vinyl Chloride/metabolism , Water Pollutants, Chemical/metabolism , Bacterial Typing Techniques , Biodegradation, Environmental , Chloroflexi/classification , Chloroflexi/metabolism , Colony Count, Microbial , DNA, Bacterial/analysis , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Environmental Monitoring , Ethylenes/metabolism , Fresh Water , Gene Dosage , Genes, Bacterial , Genes, rRNA , Halogenation , Oxidoreductases/metabolism , RNA, Bacterial/analysis , RNA, Bacterial/genetics , RNA, Bacterial/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA , Water Microbiology
20.
Water Res ; 43(13): 3207-16, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19501382

ABSTRACT

Insight into the pathways of biodegradation and external factors controlling their activity is essential in adequate environmental risk assessment of chlorinated aliphatic hydrocarbon pollution. This study focuses on biodegradation of 1,2-dichloroethane (1,2-DCA) in microcosms containing sediment sourced from the European rivers Ebro, Elbe and Danube. Biodegradation was studied under different redox conditions. Reductive dechlorination of 1,2-DCA was observed with Ebro and Danube sediment with chloroethane, or ethene, respectively, as the major dechlorination products. Different reductively dehalogenating micro-organisms (Dehalococcoides spp., Dehalobacter spp., Desulfitobacterium spp. and Sulfurospirillum spp.) were detected by 16S ribosomal RNA gene-targeted PCR and sequence analyses of 16S rRNA gene clone libraries showed that only 2-5 bacterial orders were represented in the microcosms. With Ebro and Danube sediment, indications for anaerobic oxidation of 1,2-DCA were obtained under denitrifying or iron-reducing conditions. No biodegradation of 1,2-DCA was observed in microcosms with Ebro sediment under the different tested redox conditions. This research shows that 1,2-DCA biodegradation capacity was present in different river sediments, but not in the water phase of the river systems and that biodegradation potential with associated microbial communities in river sediments varies with the geochemical properties of the sediments.


Subject(s)
Bacteria/metabolism , Ethylene Dichlorides/metabolism , Geologic Sediments/microbiology , Rivers/microbiology , Bacteria/classification , Biodegradation, Environmental , Environmental Monitoring , Geologic Sediments/chemistry , Oxidation-Reduction , RNA, Ribosomal, 16S/metabolism , Rivers/chemistry
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