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1.
PLoS One ; 9(10): e110374, 2014.
Article in English | MEDLINE | ID: mdl-25330305

ABSTRACT

Foehn-like extreme hot and dry wind conditions (34°C, >2.5 kPa vapor pressure deficit, and 7 m s(-1)) strongly affect grain quality in rice (Oryza sativa L.). This is a current concern because of the increasing frequency and intensity of combined heat and water-deficit stress under climate change. Foehn-induced dry wind conditions during the grain-filling stage increase ring-shaped chalkiness as a result of spatiotemporal reduction in starch accumulation in the endosperm, but kernel growth is sometimes maintained by osmotic adjustment. Here, we assess the effects of dry wind on chalky ring formation in environmentally controlled growth chambers. Our results showed that hot and dry wind conditions that lasted for >24 h dramatically increased chalky ring formation. Hot and dry wind conditions temporarily reduced panicle water potential to -0.65 MPa; however, kernel growth was maintained by osmotic adjustment at control levels with increased transport of assimilate to the growing kernels. Dynamic tracer analysis with a nano-electrospray-ionization Orbitrap mass spectrometer and quantitative polymerase chain reaction analysis revealed that starch degradation was negligible in the short-term treatment. Overall expression of starch synthesis-related genes was found to be down-regulated at moderately low water potential. Because the events observed at low water potential preceded the packing of starch granules in cells, we concluded that reduced rates of starch biosynthesis play a central role in the events of cellular metabolism that are altered at osmotic adjustment, which leads to chalky ring formation under short-term hot and dry wind conditions.


Subject(s)
Hot Temperature , Oryza/anatomy & histology , Oryza/metabolism , Osmosis , Starch/biosynthesis , Wind , Endosperm/anatomy & histology , Endosperm/drug effects , Endosperm/genetics , Endosperm/metabolism , Gene Expression Regulation, Plant/drug effects , Organ Size/drug effects , Oryza/drug effects , Oryza/genetics , Osmosis/drug effects , Photosynthesis/drug effects , Time Factors , Water/pharmacology
2.
Anal Biochem ; 433(1): 70-8, 2013 Feb 01.
Article in English | MEDLINE | ID: mdl-23068039

ABSTRACT

A modified cell pressure probe and an online Orbitrap mass spectrometer were used to sample in situ plant single cells without any additional manipulation. The cell pressure probe, a quartz capillary tip filled with an oil mixture, was penetrated to various depths into parenchyma cells of tulip bulb scale, followed by a hydraulic continuity test to determine the exact location of the tip inside target cells. The operation was conducted under a digital microscope, and the capillary tip was photographed to calculate the volume of the cell sap sucked. The cell sap sample was then directly nebulized/ionized under high-voltage conditions at the entrance of the mass spectrometer. Several sugars, amino acids, organic acids, vitamins, fatty acids, and secondary metabolites were detected. Because picoliter solutions can be accurately handled and measured, known volumes of standard solutions can be added to cell sap samples inside the capillary tip to be used as references for metabolite characterization and relative quantitation. The high precision and sensitivity of the cell pressure probe and Orbitrap mass spectrometer allow for the manipulation and analysis of both femtoliter cell sap samples and standard solutions.


Subject(s)
Metabolomics/methods , Spectrometry, Mass, Electrospray Ionization/methods , Tulipa/cytology , Tulipa/metabolism , Cell Survival , Plant Roots/cytology , Plant Roots/metabolism , Pressure , Single-Cell Analysis
3.
Org Biomol Chem ; 10(47): 9359-72, 2012 Dec 21.
Article in English | MEDLINE | ID: mdl-23111419

ABSTRACT

Norharmane is a compound that belongs to a family of alkaloids called ß-carbolines (ßCs). These alkaloids are present in a wide range of biological systems, playing a variety of significant photo-dependent roles. Upon UV-A irradiation, ßCs are able to act as efficient photosensitizers. In this work, we have investigated the photosensitized oxidation of 2'-deoxyadenosine 5'-monophosphate (dAMP) by norharmane in an aqueous phase, upon UV-A (350 nm) irradiation. The effect of the pH was evaluated on both the interactions between norharmane and dAMP in the ground and electronic excited states, and on the dAMP photosensitized oxidation. A quite strong static interaction between norharmane and dAMP was observed, especially under those pH conditions where the protonated form of the alkaloid is present (pH < 7). Theoretical studies were performed to further characterize the static complex structure. The participation of reactive oxygen species (ROS) in the photosensitized reaction was also investigated and the photoproducts were characterized by means of UV-LDI-MS and ESI-MS. All the data provided herein indicate that electron transfer (Type I) within a self-assembled norharmane-dAMP complex is the operative mechanism in the dAMP photosensitization.


Subject(s)
Deoxyadenine Nucleotides/chemistry , Harmine/analogs & derivatives , Light , Carbolines , Harmine/chemistry , Hydrogen-Ion Concentration , Molecular Structure , Oxidation-Reduction , Spectrometry, Mass, Electrospray Ionization
4.
Mass Spectrom (Tokyo) ; 1(1): A0003, 2012.
Article in English | MEDLINE | ID: mdl-24349904

ABSTRACT

In this work we describe the use of a combination of a cell pressure probe and a UV-matrix-assisted laser desorption/ionization time of flight (UV-MALDI-TOF) mass spectrometer for the in situ picoliter sampling and shotgun metabolite profiling of living single cells of plants. In addition to quantifiable sampling, the pressure probe has some unique features which differentiate it from other single-cell analytical tools. Cell wall and plasma membrane properties and water relations of in situ living single cells can be analyzed before sampling the cell sap. In addition, the fully-controlled sampling of cells located at different depths in plant tissues, measurement of the sample volume, and the addition of internal standards are facilitated by the pressure probe. Using a variety of organic compounds and nanoparticles as UV-MALDI matrices, metabolites from neutral carbohydrates to amino acids and other metabolites can be detected through UV-MALDI-TOF mass spectrometry analyses of picoliter-sized, single-cell samples.

5.
J Inj Violence Res ; 3(1): 55-9, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21483215

ABSTRACT

UNLABELLED: The main objective for introducing this case study is to create a platform from which the importance of road traffic related injuries and traumas can be emphasized and discussed within and across various fields of investigation. The long term goal is to entice public campaign around unmet needs for higher road safety measures to reduce primary, secondary, and tertiary risks of injuries and traumas. CASE: a 28-year-old pregnant woman with a 16-week gestational age fetus was involved in a road car crash resulting in multiple traumas. Evaluation and treatment was initiated in the local Urgent Care Unit and continued in the emergency department and operation room. Patient underwent the following procedures: laparotomy, diverting colostomy, terminating pregnancy, right calcaneal traction and long leg splint, as well as multiple irrigation-debridements. Finally, the wound was left open and the patient was admitted to Intensive Care Unit. We hope that the introduction of this case for a "Ground Round" discussion will stir up a comprehensive discussion regarding the injury and trauma related preventive measures as well as treatment approaches in cases involving pregnant women in car accidents, and will bring about a holistic overview of this issue by the experts in various fields.


Subject(s)
Accidents, Traffic , Multiple Trauma/complications , Pregnancy Complications/therapy , Abdominal Injuries/complications , Abdominal Injuries/therapy , Adult , Female , Fibula/injuries , Humans , Multiple Trauma/therapy , Pelvis/injuries , Perineum/injuries , Pregnancy , Tibial Fractures/complications , Tibial Fractures/therapy , Treatment Outcome
6.
Anal Chem ; 82(13): 5518-26, 2010 Jul 01.
Article in English | MEDLINE | ID: mdl-20518509

ABSTRACT

Nanoparticles (NPs) of diamond, titanium dioxide, titanium silicon oxide, barium strontium titanium oxide, and silver (Ag) were examined for their potential as MALDI matrixes for direct laser desorption/ionization of carbohydrates, especially fructans, from plant tissue. Two sample preparation methods including solvent-assisted and solvent-free (dry) NPs deposition were performed and compared. All examined NPs except for Ag could desorb/ionize standard sucrose and fructans in positive and in negative ion mode. Ag NPs yielded good signals only for nonsalt-doped samples that were measured in the negative ion mode. In the case of in vivo studies, except for Ag, all NPs studied could desorb/ionize carbohydrates from tissue in both the positive and negative ion modes. Furthermore, compared to the results obtained with soluble sugars extracted from plant tissues, fructans with higher molecular weight intact molecular ions could be detected when the plant tissues were directly profiled. The limit of detection (LOD) of fructans and the ratios between signal intensities and fructan concentrations were analyzed. NPs had similar LODs for standard fructan triose (1-kestose) in the positive ion mode and better LODs in the negative ion mode when compared with the common crystalline organic MALDI matrixes used for carbohydrates (2,5-dihydroxybenzoic acid and nor-harmane) or carbon nanotubes. Solvent-free NP deposition on tissues partially improves the signal acquisition. Although lower signal-to-noise ratio sugar signals were acquired from the tissues when compared to the solvent-assisted method, the reproducibility averaged over all sample was more uniform.


Subject(s)
Diamond/chemistry , Fructans/chemistry , Nanoparticles/chemistry , Oxides/chemistry , Silicon Dioxide/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Strontium/chemistry , Titanium/chemistry , Barium/chemistry , Fructans/analysis , Gold/chemistry , Nanotubes, Carbon/chemistry , Plant Roots/chemistry , Sucrose/analysis , Trisaccharides/analysis , Tulipa/chemistry
7.
Photochem Photobiol Sci ; 8(8): 1139-49, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19639116

ABSTRACT

The photochemistry of norharmane (9H-pyrido[3,4-b]indole) in acidic (pH 5.0+/-0.1) and alkaline (pH 10.0+/-0.1) aqueous solutions was studied. The photochemical reactions were monitored by TLC, UV/VIS absorption spectroscopy, high-performance liquid chromatography (HPLC), electronic ionization-mass spectrometry (EI-MS), UV-laser desorption/ionization-time of flight-mass spectrometry (UV-LDI-TOF-MS) and an enzymatic method for H2O2 determination. The neutral (nHoN) and the protonated (nHoH+) forms of norharmane irradiated under Ar atmosphere were photostable, but they suffered a photochemical transformation in the presence of O2, yielding as photoproducts norharmane dimers, trimers and tetramers. nHoN shown to be more photostable than nHoH+. The nHoH+ and nHoN consumption quantum yields were 1.82x10(-3) and 0.51x10(-3), respectively, and the mechanisms involved in its photochemistry are discussed. H2O2 and singlet oxygen (1O2) were also detected and quantified in irradiated solutions of norharmane, and their role in the photochemistry of norharmane is discussed.


Subject(s)
Harmine/analogs & derivatives , Mutagens/chemistry , Photochemistry , Water/chemistry , Carbolines , Harmine/chemistry , Hydrogen Peroxide/chemistry , Hydrogen-Ion Concentration , Mass Spectrometry , Oxygen/chemistry , Reactive Oxygen Species/chemistry , Singlet Oxygen/chemistry , Solutions/chemistry , Spectrometry, Fluorescence
8.
J Am Soc Mass Spectrom ; 19(12): 1841-8, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18835726

ABSTRACT

Single-cell cytoplasm sap (1-10 pL) was extracted by using a pressure probe glass microcapillary tip from tulip leaf and bulb and analyzed by UV-MALDI-TOF MS for free underivatized carbohydrate content. Three matrices including 2,5-dihydroxybenzoic acid (DHB), 2,4,6-trihydroxyacetophenone (THAP), and carbon nanotubes (CNTs) in positive ion mode were selected for analysis because of acceptable carbohydrate-related signal reproducibility. Disaccharide and oligosaccharide (up to 15 Hex when THAP was used, 11 Hex with DHB, and 7 Hex with CNTs) were detected in tulip bulb cell cytoplasm sample. When DHB was used as matrix, neutral carbohydrates were more abundantly detected as sodiated cations; the sugar-related signals, however, appeared as dominant potassiated cations when THAP and CNTs were used. Small amount of monosaccharide was also detected in bulb cell cytoplasm with CNTs as matrix. UV-MALDI-TOF MS of leaf cell extract resulted in high-resolution detection of hexose and disaccharide with DHB, THAP, and CNTs.


Subject(s)
Carbohydrates/analysis , Plants/chemistry , Cytoplasm/chemistry , Plant Cells , Pressure , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tulipa/chemistry , Tulipa/cytology , Ultraviolet Rays
9.
Anal Biochem ; 383(2): 159-67, 2008 Dec 15.
Article in English | MEDLINE | ID: mdl-18805390

ABSTRACT

Underivatized carbohydrates of tulip bulb and leaf tissues were characterized in situ by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) by using carbon nanotubes (CNTs) as matrix. Two sample preparation methods--(i) depositing CNTs on the fresh tissue slices placed on the probe and (ii) locating semitransparent tissues on a dried layer of CNTs on the probe--were examined. Furthermore, practicability of in situ starch analysis by MALDI-TOF MS was examined by detection of glucose originated from on-probe amyloglucosidase-catalyzed degradation of starch on the tissue surface. Besides, CNTs could efficiently desorb/ionize natural mono-, di-, and oligosaccharides extracted from tulip bulb tissues as well as glucose resulting from starch enzymatic degradation in vitro. These results were compared with those obtained by in situ MALDI-TOF MS analysis of similar tissues. Positive ion mode showed superior signal reproducibility. CNTs deposited under semitransparent tissue could also desorb/ionize neutral carbohydrates, leading to nearly complete elimination of matrix cluster signals but with an increase in tissue-originated signals. Furthermore, several experiments were carried out to compare the efficiency of 2,5-dihydroxybenzoic acid, nor-harmane, alpha-cyano-4-hydroxycinnamic acid, and CNTs as matrices for MALDI of neutral carbohydrates from the intact plant tissue surface and for enzymatic tissue starch degradation; these results are discussed in brief. Among matrices studied, the lowest laser power was needed to acquire carbohydrate signals with high signal-to-noise ratio and resolution when CNTs were used.


Subject(s)
Carbohydrates/analysis , Glucan 1,4-alpha-Glucosidase/metabolism , Nanotubes, Carbon , Starch/metabolism , Tulipa/chemistry , Tulipa/cytology , Analytic Sample Preparation Methods , Carbohydrates/chemistry , Carbohydrates/isolation & purification , Glucose/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tulipa/enzymology
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