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1.
Sci Rep ; 14(1): 9547, 2024 04 25.
Article in English | MEDLINE | ID: mdl-38664546

ABSTRACT

Temperature sensitivity of abdominal pigmentation in Drosophila melanogaster females allows to investigate the mechanisms underlying phenotypic plasticity. Thermal plasticity of pigmentation is due to modulation of tan and yellow expression, encoding pigmentation enzymes. Furthermore, modulation of tan expression by temperature is correlated to the variation of the active histone mark H3K4me3 on its promoter. Here, we test the role of the DotCom complex, which methylates H3K79, another active mark, in establishment and plasticity of pigmentation. We show that several components of the DotCom complex are involved in the establishment of abdominal pigmentation. In particular, Grappa, the catalytic unit of this complex, plays opposite roles on pigmentation at distinct developmental stages. Indeed, its down-regulation from larval L2 to L3 stages increases female adult pigmentation, whereas its down-regulation during the second half of the pupal stage decreases adult pigmentation. These opposite effects are correlated to the regulation of distinct pigmentation genes by Grappa: yellow repression for the early role and tan activation for the late one. Lastly, reaction norms measuring pigmentation along temperature in mutants for subunits of the DotCom complex reveal that this complex is not only involved in the establishment of female abdominal pigmentation but also in its plasticity.


Subject(s)
Drosophila Proteins , Drosophila melanogaster , Histones , Pigmentation , Animals , Drosophila melanogaster/genetics , Drosophila melanogaster/growth & development , Female , Pigmentation/genetics , Drosophila Proteins/metabolism , Drosophila Proteins/genetics , Histones/metabolism , Temperature , Gene Expression Regulation, Developmental , Abdomen
2.
Sci Rep ; 13(1): 3513, 2023 03 02.
Article in English | MEDLINE | ID: mdl-36864153

ABSTRACT

Cuticle pigmentation was shown to be associated with body temperature for several relatively large species of insects, but it was questioned for small insects. Here we used a thermal camera to assess the association between drosophilid cuticle pigmentation and body temperature increase when individuals are exposed to light. We compared mutants of large effects within species (Drosophila melanogaster ebony and yellow mutants). Then we analyzed the impact of naturally occurring pigmentation variation within species complexes (Drosophila americana/Drosophila novamexicana and Drosophila yakuba/Drosophila santomea). Finally we analyzed lines of D. melanogaster with moderate differences in pigmentation. We found significant differences in temperatures for each of the four pairs we analyzed. The temperature differences appeared to be proportional to the differently pigmented area: between Drosophila melanogaster ebony and yellow mutants or between Drosophila americana and Drosophila novamexicana, for which the whole body is differently pigmented, the temperature difference was around 0.6 °C ± 0.2 °C. By contrast, between D. yakuba and D. santomea or between Drosophila melanogaster Dark and Pale lines, for which only the posterior abdomen is differentially pigmented, we detected a temperature difference of about 0.14 °C ± 0.10 °C. This strongly suggests that cuticle pigmentation has ecological implications in drosophilids regarding adaptation to environmental temperature.


Subject(s)
Body Temperature , Diospyros , Animals , Drosophila melanogaster , Fever , Drosophila , Pigmentation
4.
Biol Aujourdhui ; 216(1-2): 41-47, 2022.
Article in French | MEDLINE | ID: mdl-35876520

ABSTRACT

Small-scale evolution or microevolution concerns evolution at the intra-specific level or between closely related species. At the intra-specific level, it allows the analysis of the evolutionary forces at work: mutation, genetic drift, migration and selection. Moreover, because of the short evolutionary time, it is easier to identify the genetic basis of observed phenotypic differences. Most studies focus on current populations but more and more analyses are performed on ancient DNA. This provides important information for tracing the history of populations and also allows the reconstruction of phenotypes of individuals that disappeared several thousand years ago. In this short review, I present studies showing how pre-zygotic or post-zygotic barriers involved in species formation are set up using the example of the geographical barrier due to the formation of the Isthmus of Panama and that of the heterochromatin divergence in Drosophilidae. I also describe the different approaches that have been used to identify the genetic basis of well known phenotypic variations: candidate gene approach (about melanism in felines), QTL mapping (variation in the number of lateral bone plates in sticklebacks), association study (pigmentation in the Asian ladybird). Finally, I illustrate the key impact of natural selection with the iconic example of the evolution of the beak of Galapagos finches, and the role of certain developmental genes in its morphological diversification.


Title: L'évolution à petite échelle. Abstract: L'évolution à petite échelle ou microévolution concerne l'évolution au niveau intra-spécifique ou entre espèces proches. Au niveau intra-spécifique, elle permet d'analyser les forces évolutives en action : mutation, dérive génétique, migration et sélection. De plus, en raison de ce temps évolutif court, il est plus facile d'identifier les bases génétiques des différences phénotypiques observées. La plupart des études porte sur des populations actuelles mais de plus en plus de travaux analysent l'ADN ancien. Ces derniers apportent non seulement des informations importantes pour retracer l'histoire des populations mais permettent également de reconstituer les phénotypes d'individus disparus depuis plusieurs milliers d'années. Dans cette courte revue, je présente des travaux montrant comment se mettent en place des barrières pré-zygotiques ou post-zygotiques impliquées dans la formation d'espèces, avec l'exemple de la barrière géographique due à la formation de l'isthme de Panama et celui de la divergence de l'hétérochromatine chez les drosophilidés. Par ailleurs, à propos de cas bien établis, je décris les différentes approches qui ont été utilisées pour identifier les bases génétiques de variations phénotypiques : approche gène-candidat pour ce qui concerne le mélanisme chez les félins, cartographie QTL (Quantitative trait loci) pour la variation du nombre de plaques osseuses latérales chez les épinoches, étude d'association pour la pigmentation chez la coccinelle asiatique. Enfin, j'illustre le rôle de la sélection naturelle avec l'exemple iconique de l'évolution du bec des pinsons des Galapagos et l'implication de certains gènes du développement dans sa diversification morphologique.


Subject(s)
Finches , Selection, Genetic , Animals , Beak/anatomy & histology , Biological Evolution , Cats , Evolution, Molecular , Finches/anatomy & histology , Finches/genetics , Genetic Variation , Mutation , Phenotype
5.
Insects ; 12(10)2021 Sep 29.
Article in English | MEDLINE | ID: mdl-34680653

ABSTRACT

Drosophila melanogaster has played a paramount role in epigenetics, the study of changes in gene function inherited through mitosis or meiosis that are not due to changes in the DNA sequence. By analyzing simple phenotypes, such as the bristle position or cuticle pigmentation, as read-outs of regulatory processes, the identification of mutated genes led to the discovery of major chromatin regulators. These are often conserved in distantly related organisms such as vertebrates or even plants. Many of them deposit, recognize, or erase post-translational modifications on histones (histone marks). Others are members of chromatin remodeling complexes that move, eject, or exchange nucleosomes. We review the role of D. melanogaster research in three epigenetic fields: Heterochromatin formation and maintenance, the repression of transposable elements by piRNAs, and the regulation of gene expression by the antagonistic Polycomb and Trithorax complexes. We then describe how genetic tools available in D. melanogaster allowed to examine the role of histone marks and show that some histone marks are dispensable for gene regulation, whereas others play essential roles. Next, we describe how D. melanogaster has been particularly important in defining chromatin types, higher-order chromatin structures, and their dynamic changes during development. Lastly, we discuss the role of epigenetics in a changing environment.

6.
Biol Aujourdhui ; 214(1-2): 25-31, 2020.
Article in French | MEDLINE | ID: mdl-32773027

ABSTRACT

Phenotypic plasticity describes the ability of a given genotype to produce different phenotypes in response to distinct environmental conditions. It has major implications in agronomy, animal husbandry and medicine and is also thought to facilitate evolution. Phenotypic plasticity is widely observed in the wild. It is only relatively recently that the mechanisms involved in phenotypic plasticity have been analysed. Thanks to laboratory experiments we understand better how environmental conditions are involved in phenotypic variations. This article introduces major concepts from the phenotypic plasticity field, presents briefly mechanisms involved in phenotypic plasticity and discusses the links between phenotypic plasticity and evolution.


TITLE: La plasticité phénotypique : une brève introduction. ABSTRACT: La plasticité phénotypique décrit la propriété d'un génotype donné à produire des phénotypes différents en réponse à des conditions environnementales distinctes. Elle est observée fréquemment dans la nature et des expériences en laboratoire permettent de mieux en comprendre les mécanismes. Cet article introduit les concepts principaux du domaine de la plasticité phénotypique, présente brièvement les mécanismes impliqués dans la plasticité phénotypique et discute les liens entre plasticité phénotypique et évolution.


Subject(s)
Adaptation, Physiological/physiology , Phenotype , Animals , Biological Evolution , Gene-Environment Interaction , Genetic Variation/physiology , Humans , Temperature
7.
Biol Aujourdhui ; 214(1-2): 33-44, 2020.
Article in French | MEDLINE | ID: mdl-32773028

ABSTRACT

Insects represent 85% of the animals. They have adapted to many environments and play a major role in ecosystems. Many insect species exhibit phenotypic plasticity. We here report on the mechanisms involved in phenotypic plasticity of different insects (aphids, migratory locust, map butterfly, honeybee) and also on the nutritional size plasticity in Drosophila and the plasticity of the wing eye-spots of the butterfly Bicyclus anynana. We also describe in more detail our work concerning the thermal plasticity of pigmentation in Drosophila. We have shown that the expression of the tan, yellow and Ddc genes, encoding enzymes of the melanin synthesis pathway, is modulated by temperature and that it is a consequence, at least in part, of the temperature-sensitive expression of the bab locus genes that repress them.


TITLE: La plasticité phénotypique chez les insectes. ABSTRACT: Les insectes représentent 85 % des animaux. Ils se sont adaptés à de nombreux environnements et jouent un rôle majeur dans les écosystèmes. De nombreuses espèces d'insectes montrent de la plasticité phénotypique. Nous présentons ici les mécanismes impliqués dans la plasticité phénotypique chez différents insectes (les pucerons, le criquet migrateur, le papillon carte géographique, l'abeille ainsi que la plasticité nutritionnelle de la taille chez la drosophile et la plasticité des ocelles sur les ailes du papillon Bicyclus anynana). Nous décrivons également plus en détail nos travaux sur la plasticité thermique de la pigmentation chez la drosophile. Le froid induit une pigmentation abdominale plus foncée chez les femelles drosophiles. Nous avons montré que l'expression des gènes tan,yellow et Ddc, codant des enzymes de la voie de synthèse des mélanines, est modulée par la température et que c'est une conséquence, au moins en partie, de l'expression sensible à la température des gènes du locus bab qui les répriment.


Subject(s)
Adaptation, Physiological/physiology , Insecta/physiology , Phenotype , Animals , Aphids/physiology , Bees/physiology , Butterflies/physiology , Drosophila melanogaster/physiology , Ecosystem , Gene Expression Regulation , Gene-Environment Interaction , Grasshoppers/physiology , Melanins/biosynthesis , Melanins/genetics , Pigmentation/genetics , Pigmentation/physiology , Temperature
8.
PLoS Genet ; 14(8): e1007573, 2018 08.
Article in English | MEDLINE | ID: mdl-30067846

ABSTRACT

Drosophila body pigmentation has emerged as a major Evo-Devo model. Using two Drosophila melanogaster lines, Dark and Pale, selected from a natural population, we analyse here the interaction between genetic variation and environmental factors to produce this complex trait. Indeed, pigmentation varies with genotype in natural populations and is sensitive to temperature during development. We demonstrate that the bric à brac (bab) genes, that are differentially expressed between the two lines and whose expression levels vary with temperature, participate in the pigmentation difference between the Dark and Pale lines. The two lines differ in a bab regulatory sequence, the dimorphic element (called here bDE). Both bDE alleles are temperature-sensitive, but the activity of the bDE allele from the Dark line is lower than that of the bDE allele from the Pale line. Our results suggest that this difference could partly be due to differential regulation by AbdB. bab has been previously reported to be a repressor of abdominal pigmentation. We show here that one of its targets in this process is the pigmentation gene tan (t), regulated via the tan abdominal enhancer (t_MSE). Furthermore, t expression is strongly modulated by temperature in the two lines. Thus, temperature sensitivity of t expression is at least partly a consequence of bab thermal transcriptional plasticity. We therefore propose that a gene regulatory network integrating both genetic variation and temperature sensitivity modulates female abdominal pigmentation. Interestingly, both bDE and t_MSE were previously shown to have been recurrently involved in abdominal pigmentation evolution in drosophilids. We propose that the environmental sensitivity of these enhancers has turned them into evolutionary hotspots.


Subject(s)
DNA-Binding Proteins/physiology , Drosophila Proteins/physiology , Drosophila melanogaster/genetics , Gene Regulatory Networks , Pigmentation/genetics , Transcription Factors/physiology , Alleles , Animals , Base Sequence , Binding Sites , Chromosomal Proteins, Non-Histone/genetics , Chromosomal Proteins, Non-Histone/physiology , DNA-Binding Proteins/genetics , Drosophila Proteins/genetics , Evolution, Molecular , Female , Gene Expression Regulation , Genetic Variation , Genotyping Techniques , Sequence Analysis, DNA , Temperature , Transcription Factors/genetics
9.
Mol Ecol ; 2018 Jun 29.
Article in English | MEDLINE | ID: mdl-29957826

ABSTRACT

Traits with a common genetic basis frequently display correlated phenotypic responses to selection or environmental conditions. In Drosophila melanogaster, pigmentation of the abdomen and a trident-shaped region on the thorax are genetically correlated. Here, we used a pooled replicated genomewide association approach (Pool-GWAS) to identify the genetic basis of variation in thoracic trident pigmentation in two Drosophila melanogaster populations. We confirmed the previously reported large effect of ebony and the association of the cosmopolitan inversion In(3R)Payne. For the first time, we identified tan as another major locus contributing to variation in trident pigmentation. Intriguingly, the regulatory variants of tan that were most strongly associated with female abdominal pigmentation also showed a strong association with trident pigmentation. We validated this common genetic basis in transgenic assays and found qualitatively similar effects on trident and abdominal pigmentation. Further work is required to determine whether this genetic correlation is favoured by natural selection or reflects a neutral by-product of a shared regulatory architecture.

10.
Sci Rep ; 8(1): 5328, 2018 03 28.
Article in English | MEDLINE | ID: mdl-29593305

ABSTRACT

In their seminal paper published in 1979, Gould and Lewontin argued that some traits arise as by-products of the development of other structures and not for direct utility in themselves. We show here that this applies to the trident, a pigmentation pattern observed on the thorax of Drosophila melanogaster. Using reporter constructs, we show that the expression domain of several genes encoding pigmentation enzymes follows the trident shape. This domain is complementary to the expression pattern of stripe (sr), which encodes an essential transcription factor specifying flight muscle attachment sites. We demonstrate that sr limits the expression of these pigmentation enzyme genes to the trident by repressing them in its own expression domain, i.e. at the flight muscle attachment sites. We give evidence that repression of not only yellow but also other pigmentation genes, notably tan, is involved in the trident shape. The flight muscle attachment sites and sr expression patterns are remarkably conserved in dipterans reflecting the essential role of sr. Our data suggest that the trident is a by-product of flight muscle attachment site patterning that arose when sr was co-opted for the regulation of pigmentation enzyme coding genes.


Subject(s)
Drosophila melanogaster/embryology , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Muscle Development , Animals , DNA-Binding Proteins/metabolism , Drosophila Proteins/metabolism , Female , Gene Expression Regulation, Developmental , Melanins/biosynthesis , Muscle, Skeletal/embryology , Muscle, Skeletal/metabolism , Pigmentation/genetics , Transcription Factors/metabolism
11.
Dev Genes Evol ; 227(5): 297-307, 2017 09.
Article in English | MEDLINE | ID: mdl-28780641

ABSTRACT

Phenotypic plasticity, the ability of a given genotype to produce different phenotypes in response to distinct environmental conditions, is widely observed in the wild. It is believed to facilitate evolution and, under the "flexible stem hypothesis", it is thought that an ancestral plastic species can be at the origin of sister lineages with divergent phenotypes fixed by genetic assimilation of alternative morphs. We review here the genetic mechanisms underlying such phenomenon. We show several examples in which the same gene shows transcriptional plasticity in response to environmental factors and divergence of expression within or between species. Thus, the same gene is involved both in the plasticity of a trait and in the evolution of that trait. In a few cases, it can be traced down to cis-regulatory variation in this gene and, in one case, in the very same regulatory sequence whose activity is modulated by the environment. These data are compatible with the "flexible stem hypothesis" and also suggest that the evolution of the plasticity of a trait and the evolution of the trait are not completely uncoupled as they often involve the same locus. Furthermore, the "flexible stem hypothesis" implies that it is possible to canalize initially plastic phenotypes. Several studies have shown that it was possible through modification of chromatin regulation or hormonal signalling/response. Further studies of phenotypic plasticity in an evolutionary framework are needed to see how much the findings described in this review can be generalized.


Subject(s)
Biological Evolution , Chromatin , Chromosomal Proteins, Non-Histone/genetics , Gene Expression Regulation , Adaptation, Physiological , Animals , Gene-Environment Interaction , Genetic Variation , Humans , Phenotype , Selection, Genetic
12.
Genome Biol ; 18(1): 126, 2017 07 03.
Article in English | MEDLINE | ID: mdl-28673357

ABSTRACT

BACKGROUND: The mapping resolution of genome-wide association studies (GWAS) is limited by historic recombination events and effects are often assigned to haplotype blocks rather than individual SNPs. It is not clear how many of the SNPs in the block, and which ones, are causative. Drosophila pigmentation is a powerful model to dissect the genetic basis of intra-specific and inter-specific phenotypic variation. Three tightly linked SNPs in the t-MSE enhancer have been identified in three D. melanogaster populations as major contributors to female abdominal pigmentation. This enhancer controls the expression of the pigmentation gene tan (t) in the abdominal epidermis. Two of the three SNPs were confirmed in an independent study using the D. melanogaster Genetic Reference Panel established from a North American population. RESULTS: We determined the functional impact of SNP1, SNP2, and SNP3 using transgenic lines to test all possible haplotypes in vivo. We show that all three candidate SNPs contribute to female Drosophila abdominal pigmentation. Interestingly, only two SNPs agree with the effect predicted by GWAS; the third one goes in the opposite direction because of linkage disequilibrium between multiple functional SNPs. Our experimental design uncovered strong additive effects for the three SNPs, but we also found significant epistatic effects explaining up to 11% of the total variation. CONCLUSIONS: Our results suggest that linked causal variants are important for the interpretation of GWAS and functional validation is needed to understand the genetic architecture of traits.


Subject(s)
Drosophila/genetics , Epistasis, Genetic , Genetic Linkage , Genome-Wide Association Study , Pigmentation/genetics , Polymorphism, Single Nucleotide , Animals , Animals, Genetically Modified , Female , Genes, Insect , Quantitative Trait Loci
13.
Sci Rep ; 7: 43370, 2017 02 23.
Article in English | MEDLINE | ID: mdl-28230190

ABSTRACT

Phenotypic plasticity describes the ability of a given genotype to produce distinct phenotypes in different environments. We use the temperature sensitivity of abdominal pigmentation in Drosophila melanogaster females as a model to analyse the effect of the environment on development. We reported previously that thermal plasticity of abdominal pigmentation in females involves the pigmentation gene tan (t). However, the expression of the pigmentation gene yellow (y) was also modulated by temperature in the abdominal epidermis of pharate females. We investigate here the contribution of y to female abdominal pigmentation plasticity. First, we show that y is required for the production of black Dopamine-melanin. Then, using in situ hybridization, we show that the expression of y is strongly modulated by temperature in the abdominal epidermis of pharate females but not in bristles. Interestingly, these two expression patterns are known to be controlled by distinct enhancers. However, the activity of the y-wing-body epidermal enhancer only partially mediates the effect of temperature suggesting that additional regulatory sequences are involved. In addition, we show that y and t co-expression is needed to induce strong black pigmentation indicating that y contributes to female abdominal pigmentation plasticity.


Subject(s)
Drosophila Proteins/biosynthesis , Drosophila melanogaster/physiology , Gene Expression Regulation/radiation effects , Pigmentation , Adaptation, Physiological , Animals , Drosophila melanogaster/radiation effects , Environmental Exposure , Female , Temperature
14.
PLoS Genet ; 12(8): e1006218, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27508387

ABSTRACT

Phenotypic plasticity is the ability of a given genotype to produce different phenotypes in response to distinct environmental conditions. Phenotypic plasticity can be adaptive. Furthermore, it is thought to facilitate evolution. Although phenotypic plasticity is a widespread phenomenon, its molecular mechanisms are only beginning to be unravelled. Environmental conditions can affect gene expression through modification of chromatin structure, mainly via histone modifications, nucleosome remodelling or DNA methylation, suggesting that phenotypic plasticity might partly be due to chromatin plasticity. As a model of phenotypic plasticity, we study abdominal pigmentation of Drosophila melanogaster females, which is temperature sensitive. Abdominal pigmentation is indeed darker in females grown at 18°C than at 29°C. This phenomenon is thought to be adaptive as the dark pigmentation produced at lower temperature increases body temperature. We show here that temperature modulates the expression of tan (t), a pigmentation gene involved in melanin production. t is expressed 7 times more at 18°C than at 29°C in female abdominal epidermis. Genetic experiments show that modulation of t expression by temperature is essential for female abdominal pigmentation plasticity. Temperature modulates the activity of an enhancer of t without modifying compaction of its chromatin or level of the active histone mark H3K27ac. By contrast, the active mark H3K4me3 on the t promoter is strongly modulated by temperature. The H3K4 methyl-transferase involved in this process is likely Trithorax, as we show that it regulates t expression and the H3K4me3 level on the t promoter and also participates in female pigmentation and its plasticity. Interestingly, t was previously shown to be involved in inter-individual variation of female abdominal pigmentation in Drosophila melanogaster, and in abdominal pigmentation divergence between Drosophila species. Sensitivity of t expression to environmental conditions might therefore give more substrate for selection, explaining why this gene has frequently been involved in evolution of pigmentation.


Subject(s)
Chromosomal Proteins, Non-Histone/genetics , DNA-Binding Proteins/genetics , Drosophila Proteins/genetics , Drosophila melanogaster/genetics , Gene-Environment Interaction , Selection, Genetic/genetics , Animals , Chromatin/genetics , Drosophila Proteins/biosynthesis , Drosophila melanogaster/physiology , Female , Gene Expression Regulation , Genotype , Histone-Lysine N-Methyltransferase/genetics , Melanins/biosynthesis , Phenotype , Pigmentation/genetics , Promoter Regions, Genetic , Temperature
15.
Fly (Austin) ; 8(2): 108-12, 2014.
Article in English | MEDLINE | ID: mdl-25483255

ABSTRACT

Sumoylation, the covalent attachment of SUMO, a 90 amino acid peptide related to ubiquitin, is a major modulator of protein functions. Fluorescent SUMO protein fusions have been used in cell cultures to visualize SUMO in vivo but not in multicellular organisms. We generated a transgenic line of Drosophila expressing an mCherry-SUMO fusion. We analyzed its pattern in vivo in salivary gland nuclei expressing Venus-HP1 to recognize the different chromatin components (Chromocenter, chromosome IV). We compared it to SUMO immunostaining on squashed polytene chromosomes and observed similar patterns. In addition to the previously reported SUMO localizations (chromosome arms and chromocenter), we identify 2 intense binding sites: the fourth chromosome telomere and the DAPI-bright band in the region 81F.


Subject(s)
Luminescent Proteins , SUMO-1 Protein/analysis , Animals , Animals, Genetically Modified , Drosophila , Polytene Chromosomes/chemistry , Recombinant Fusion Proteins/analysis , Red Fluorescent Protein
16.
PLoS Genet ; 8(10): e1003006, 2012.
Article in English | MEDLINE | ID: mdl-23071455

ABSTRACT

Chromodomains are found in many regulators of chromatin structure, and most of them recognize methylated lysines on histones. Here, we investigate the role of the Drosophila melanogaster protein Corto's chromodomain. The Enhancer of Trithorax and Polycomb Corto is involved in both silencing and activation of gene expression. Over-expression of the Corto chromodomain (CortoCD) in transgenic flies shows that it is a chromatin-targeting module, critical for Corto function. Unexpectedly, mass spectrometry analysis reveals that polypeptides pulled down by CortoCD from nuclear extracts correspond to ribosomal proteins. Furthermore, real-time interaction analyses demonstrate that CortoCD binds with high affinity RPL12 tri-methylated on lysine 3. Corto and RPL12 co-localize with active epigenetic marks on polytene chromosomes, suggesting that both are involved in fine-tuning transcription of genes in open chromatin. RNA-seq based transcriptomes of wing imaginal discs over-expressing either CortoCD or RPL12 reveal that both factors deregulate large sets of common genes, which are enriched in heat-response and ribosomal protein genes, suggesting that they could be implicated in dynamic coordination of ribosome biogenesis. Chromatin immunoprecipitation experiments show that Corto and RPL12 bind hsp70 and are similarly recruited on gene body after heat shock. Hence, Corto and RPL12 could be involved together in regulation of gene transcription. We discuss whether pseudo-ribosomal complexes composed of various ribosomal proteins might participate in regulation of gene expression in connection with chromatin regulators.


Subject(s)
Chromosomal Proteins, Non-Histone/metabolism , DNA-Binding Proteins/metabolism , Drosophila Proteins/metabolism , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Gene Expression Regulation , Polycomb Repressive Complex 1/metabolism , Ribosomal Proteins/metabolism , Amino Acid Sequence , Animals , Animals, Genetically Modified , Chromatin/metabolism , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , Drosophila Proteins/chemistry , Drosophila Proteins/genetics , Gene Expression , Gene Expression Profiling , Genome-Wide Association Study , HSP70 Heat-Shock Proteins/genetics , Lysine/metabolism , Methylation , Molecular Sequence Data , Phenotype , Polytene Chromosomes/genetics , Polytene Chromosomes/metabolism , Protein Binding , Protein Interaction Domains and Motifs , Ribosomal Proteins/chemistry , Ribosomal Proteins/genetics , Sequence Alignment , Transcription, Genetic , Transcriptome
17.
PLoS Genet ; 7(1): e1001280, 2011 Jan 20.
Article in English | MEDLINE | ID: mdl-21283785

ABSTRACT

The phenotype produced by a given genotype can be strongly modulated by environmental conditions. Therefore, natural populations continuously adapt to environment heterogeneity to maintain optimal phenotypes. It generates a high genetic variation in environment-sensitive gene networks, which is thought to facilitate evolution. Here we analyze the chromatin regulator crm, identified as a candidate for adaptation of Drosophila melanogaster to northern latitudes. We show that crm contributes to environmental canalization. In particular, crm modulates the effect of temperature on a genomic region encoding Hedgehog and Wingless signaling effectors. crm affects this region through both constitutive heterochromatin and Polycomb silencing. Furthermore, we show that crm European and African natural variants shift the reaction norms of plastic traits. Interestingly, traits modulated by crm natural variants can differ markedly between Drosophila species, suggesting that temperature adaptation facilitates their evolution.


Subject(s)
Adaptation, Physiological/genetics , Drosophila Proteins/genetics , Drosophila Proteins/physiology , Drosophila melanogaster/physiology , Gene Silencing , Hedgehog Proteins/genetics , Homeodomain Proteins/physiology , Repressor Proteins/genetics , Transcription Factors/physiology , Wnt1 Protein/genetics , Animals , Biological Evolution , Drosophila melanogaster/anatomy & histology , Drosophila melanogaster/genetics , Female , Genetic Variation , Heterochromatin/metabolism , Homeodomain Proteins/genetics , Male , Polycomb-Group Proteins , Signal Transduction/genetics , Temperature , Transcription Factors/genetics
18.
Chromosoma ; 120(3): 297-307, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21336627

ABSTRACT

CRAMPED (CRM), conserved from plants to animals, was previously characterized genetically as a repressive factor involved in the formation of facultative and constitutive heterochromatin (Polycomb silencing, position effect variegation). We show that crm is dynamically regulated during replication and identify the Histone gene cluster (His-C) as a major CRM target. Surprisingly, CRM is specifically required for the expression of the Histone H1 gene, like the promoter-bound transcription factor TRF2. Consistently with this, CRM genetically interacts and co-immunoprecipitates with TRF2. However, the Polycomb phenotypes observed in crm mutants are not observed in TRF2 hypomorphic mutants, suggesting that they correspond to independent roles of CRM. CRM is thus a highly pleiotropic factor involved in both activation and repression.


Subject(s)
Drosophila Proteins/metabolism , Drosophila melanogaster/genetics , Histones/genetics , Homeodomain Proteins/metabolism , Repressor Proteins/metabolism , Telomeric Repeat Binding Protein 2/metabolism , Transcription Factors/metabolism , Transcriptional Activation , Animals , Drosophila Proteins/genetics , Drosophila melanogaster/metabolism , Heterochromatin/genetics , Homeodomain Proteins/genetics , Mutation , Phenotype , Polycomb-Group Proteins , Promoter Regions, Genetic , Repressor Proteins/genetics , Salivary Glands/metabolism , Telomeric Repeat Binding Protein 2/genetics , Transcription Factors/genetics
19.
Proc Natl Acad Sci U S A ; 105(51): 20112-7, 2008 Dec 23.
Article in English | MEDLINE | ID: mdl-19104061

ABSTRACT

The thoracic bristle pattern of Drosophila results from the spatially restricted expression of the achaete-scute (ac-sc) genes in clusters of cells, mediated by the activity of many discrete cis-regulatory sequences. However, ubiquitous expression of sc or asense (ase) achieved with a heterologous promoter, in the absence of endogenous ac-sc expression, and the activity of the cis-regulatory elements, allows the development of bristles positioned at wild-type locations. We demonstrate that the products of the genes stripe, hairy, and extramacrochaetae contribute to rescue by antagonizing the activity of Sc and Ase. The three genes are expressed in specific but overlapping spatial domains of expression that form a prepattern that allows precise positioning of bristles. The redundant mechanisms might contribute to the robustness of the pattern. We discuss the possibility that patterning in trans by antagonism is ancestral and that the positional cis-regulatory sequences might be of recent origin.


Subject(s)
Body Patterning/genetics , Gene Expression Regulation, Developmental , Hair , Thorax , Animals , DNA-Binding Proteins/genetics , Drosophila , Drosophila Proteins/genetics , Enhancer Elements, Genetic , Genes, Insect , Nerve Tissue Proteins/genetics , Transcription Factors/genetics
20.
PLoS Genet ; 3(2): e30, 2007 Feb 16.
Article in English | MEDLINE | ID: mdl-17305433

ABSTRACT

Phenotypic plasticity is the ability of a genotype to produce contrasting phenotypes in different environments. Although many examples have been described, the responsible mechanisms are poorly understood. In particular, it is not clear how phenotypic plasticity is related to buffering, the maintenance of a constant phenotype against genetic or environmental variation. We investigate here the genetic basis of a particularly well described plastic phenotype: the abdominal pigmentation in female Drosophila melanogaster. Cold temperature induces a dark pigmentation, in particular in posterior segments, while higher temperature has the opposite effect. We show that the homeotic gene Abdominal-B (Abd-B) has a major role in the plasticity of pigmentation in the abdomen. Abd-B plays opposite roles on melanin production through the regulation of several pigmentation enzymes. This makes the control of pigmentation very unstable in the posterior abdomen, and we show that the relative spatio-temporal expression of limiting pigmentation enzymes in this region of the body is thermosensitive. Temperature acts on melanin production by modulating a chromatin regulator network, interacting genetically with the transcription factor bric-à-brac (bab), a target of Abd-B and Hsp83, encoding the chaperone Hsp90. Genetic disruption of this chromatin regulator network increases the effect of temperature and the instability of the pigmentation pattern in the posterior abdomen. Colocalizations on polytene chromosomes suggest that BAB and these chromatin regulators cooperate in the regulation of many targets, including several pigmentation enzymes. We show that they are also involved in sex comb development in males and that genetic destabilization of this network is also strongly modulated by temperature for this phenotype. Thus, we propose that phenotypic plasticity of pigmentation is a side effect reflecting a global impact of temperature on epigenetic mechanisms. Furthermore, the thermosensitivity of this network may be related to the high evolvability of several secondary sexual characters in the genus Drosophila.


Subject(s)
Chromatin/genetics , Chromatin/metabolism , Drosophila melanogaster/genetics , Drosophila melanogaster/physiology , Gene Expression Regulation , Pigmentation/physiology , Temperature , Abdomen/physiology , Alleles , Animals , DNA-Binding Proteins/metabolism , Drosophila Proteins/metabolism , Drosophila melanogaster/enzymology , Female , HSP90 Heat-Shock Proteins/metabolism , Homeodomain Proteins/metabolism , Male , Melanins/biosynthesis , Mutation/genetics , Phenotype , Pigmentation/genetics , Protein Binding , Time Factors , Transcription Factors/metabolism
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