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1.
Comput Methods Programs Biomed ; 221: 106901, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35636359

ABSTRACT

OBJECTIVE: To investigate the impact of atrial flutter (Afl) in the atrial arrhythmias classification task. We additionally advocate the use of a subject-based split for future studies in the field in order to avoid within-subject correlation which may lead to over-optimistic inferences. Finally, we demonstrate the effectiveness of the classifiers outside of the initially studied circumstances, by performing an inter-dataset model evaluation of the classifiers in data from different sources. METHODS: ECG signals of two private and three public (two MIT-BIH and Chapman ecgdb) databases were preprocessed and divided into 10s segments which were then subject to feature extraction. The created datasets were divided into a training and test set in two ways, based on a random split and a patient split. Classification was performed using the XGBoost classifier, as well as two benchmark classification models using both data splits. The trained models were then used to make predictions on the test data of the remaining datasets. RESULTS: The XGBoost model yielded the best performance across all datasets compared to the remaining benchmark models, however variability in model performance was seen across datasets, with accuracy ranging from 70.6% to 89.4%, sensitivity ranging from 61.4% to 76.8%, and specificity ranging from 87.3% to 95.5%. When comparing the results between the patient and the random split, no significant difference was seen in the two private datasets and the Chapman dataset, where the number of samples per patient is low. Nonetheless, in the MIT-BIH dataset, where the average number of samples per patient is approximately 1300, a noticeable disparity was identified. The accuracy, sensitivity, and specificity of the random split in this dataset of 93.6%, 86.4%, and 95.9% respectively, were decreased to 88%, 61.4%, and 89.8% in the patient split, with the largest drop being in Afl sensitivity, from 71% to 5.4%. The inter-dataset scores were also significantly lower than their intra-dataset counterparts across all datasets. CONCLUSIONS: CAD systems have great potential in the assistance of physicians in reliable, precise and efficient detection of arrhythmias. However, although compelling research has been done in the field, yielding models with excellent performances on their datasets, we show that these results may be over-optimistic. In our study, we give insight into the difficulty of detection of Afl on several datasets and show the need for a higher representation of Afl in public datasets. Furthermore, we show the necessity of a more structured evaluation of model performance through the use of a patient-based split and inter-dataset testing scheme to avoid the problem of within-subject correlation which may lead to misleadingly high scores. Finally, we stress the need for the creation and use of datasets with a higher number of patients and a more balanced representation of classes if we are to progress in this mission.


Subject(s)
Atrial Fibrillation , Atrial Flutter , Arrhythmias, Cardiac/diagnosis , Atrial Fibrillation/diagnosis , Atrial Flutter/diagnosis , Databases, Factual , Electrocardiography/methods , Humans
2.
Chaos ; 26(6): 063101, 2016 06.
Article in English | MEDLINE | ID: mdl-27368766

ABSTRACT

In the present paper, we study the nonlinear dynamics of microtubules relying on the known u-model. As a mathematical procedure, we use the simplest equation method. We recover some solutions obtained earlier using less general methods. These are kink solitons. In addition, we show that the solution of the crucial differential equation, describing nonlinear dynamics of microtubules, can be a bell-type soliton. The discovery of this new solution is supported by numerical analysis.


Subject(s)
Microtubules/metabolism , Models, Theoretical
3.
Chaos ; 24(2): 023124, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24985438

ABSTRACT

Spatially periodic modulation of the intersite coupling in two-dimensional (2D) nonlinear lattices modifies the eigenvalue spectrum by opening mini-gaps in it. This work aims to build stable localized modes in the new bandgaps. Numerical analysis shows that single-peak and composite two- and four-peak discrete static solitons and breathers emerge as such modes in certain parameter areas inside the mini-gaps of the 2D superlattice induced by the periodic modulation of the intersite coupling along both directions. The single-peak solitons and four-peak discrete solitons are stable in a part of their existence domain, while unstable stationary states (in particular, two-soliton complexes) may readily transform into robust localized breathers.

4.
Article in English | MEDLINE | ID: mdl-24125323

ABSTRACT

We report that infinite and semi-infinite lattices with spatially inhomogeneous self-defocusing (SDF) onsite nonlinearity, whose strength increases rapidly enough toward the lattice periphery, support stable unstaggered (UnST) discrete bright solitons, which do not exist in lattices with the spatially uniform SDF nonlinearity. The UnST solitons coexist with stable staggered (ST) localized modes, which are always possible under the defocusing onsite nonlinearity. The results are obtained in a numerical form and also by means of variational approximation (VA). In the semi-infinite (truncated) system, some solutions for the UnST surface solitons are produced in an exact form. On the contrary to surface discrete solitons in uniform truncated lattices, the threshold value of the norm vanishes for the UnST solitons in the present system. Stability regions for the novel UnST solitons are identified. The same results imply the existence of ST discrete solitons in lattices with the spatially growing self-focusing nonlinearity, where such solitons cannot exist either if the nonlinearity is homogeneous. In addition, a lattice with the uniform onsite SDF nonlinearity and exponentially decaying intersite coupling is introduced and briefly considered. Via a similar mechanism, it may also support UnST discrete solitons. The results may be realized in arrayed optical waveguides and collisionally inhomogeneous Bose-Einstein condensates trapped in deep optical lattices. A generalization for a two-dimensional system is briefly considered.

5.
Phys Rev Lett ; 108(14): 140402, 2012 Apr 06.
Article in English | MEDLINE | ID: mdl-22540773

ABSTRACT

Density-wave patterns in discrete media with local interactions are known to be unstable. We demonstrate that stable double- and triple-period patterns (DPPs and TPPs), with respect to the period of the underlying lattice, exist in media with nonlocal nonlinearity. This is shown in detail for dipolar Bose-Einstein condensates, loaded into a deep one-dimensional optical lattice. The DPP and TPP emerge via phase transitions of the second and first kind, respectively. The emerging patterns may be stable if the dipole-dipole interactions are repulsive and sufficiently strong, in comparison with the local repulsive nonlinearity. Within the set of the considered states, the TPPs realize a minimum of the free energy. A vast stability region for the TPPs is found in the parameter space, while the DPP stability region is relatively narrow. The same mechanism may create stable density-wave patterns in other physical media featuring nonlocal interactions.

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