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1.
Sci Rep ; 13(1): 7281, 2023 05 04.
Article in English | MEDLINE | ID: mdl-37142607

ABSTRACT

Seroepidemiology, or measuring antibodies to pathogens to estimate population-level exposure, can provide useful public health data. The tests used, however, often lack sufficient validation data due to absence of a gold standard. For many pathogens, serum antibodies can be detected long after resolution of infection, but infection status is often used as a gold standard for antibody positivity. To ensure that recently developed antibody tests for seroepidemiology of Chlamydia trachomatis (Ct), the causative agent of urogenital chlamydia and the blinding eye disease trachoma, have high performance, we generated a chimeric antibody to the immunodominant Ct antigen Pgp3. Two clones were selected to evaluate the test performance of three assays to measure antibodies to Pgp3: multiplex bead assay (MBA), enzyme-linked immunosorbent assay (ELISA), and lateral flow assay (LFA). Overall, each assay demonstrated high accuracy and precision when tested using either clone, and the clones were stable when stored at - 20 °C and 4 °C for almost 2 years. The limit of detection was similar for MBA and LFA, but almost a log-fold higher (i.e. less sensitive) using ELISA. Overall, the chimeric antibodies represent stable control reagents for tests with robust performance and will facilitate deployment of these tests to other laboratories.


Subject(s)
Chlamydia Infections , Chlamydia trachomatis , Humans , Bacterial Proteins , Antibodies, Monoclonal , Seroepidemiologic Studies , Antibodies, Bacterial , Antigens, Bacterial , Immunoassay , Enzyme-Linked Immunosorbent Assay
2.
Biol Bull ; 245(2): 103-116, 2023 Oct.
Article in English | MEDLINE | ID: mdl-38980328

ABSTRACT

AbstractGulf of Maine waters are warming rapidly, prompting a reevaluation of how commercially important marine species will respond. The goal of this study was to determine the respiratory, cardiac, and locomotory responses of American lobsters (Homarus americanus) to increasing water temperatures and to compare these to similar published studies. First, we measured the heart rate and ventilation rate of 10 lobsters that were confined in a temperature-controlled chamber while exposing them to gradually warming temperatures from 16 to 30 °C over 7 h. Both heart rate and ventilation rate increased along with the temperature up to a break point, with the mean heart rate peaking at 26.5 ± 1.6 °C, while the ventilation rate peaked at 27.4 ± 0.8 °C. In a subset of these trials (n = 5), oxygen consumption was also monitored and peaked at similar temperatures. In a second experiment, both the heart rate and activity of five lobsters were monitored with custom-built dataloggers while they moved freely in a large tank, while the temperature was increased from 18 to 29 °C over 24 h. The heart rate of these lobsters also increased with temperature, but their initial heart rates were lower than we recorded from confined lobsters. Finally, we confirmed that the low heart rates of the freely moving lobsters were due to the methods used by comparing heart rate data from eight lobsters collected using both methods with each individual animal. Thus, while our overall results are consistent with data from previous studies, they also show that the methods used in studies of physiological and behavioral responses to warming temperatures can impact the results obtained.


Subject(s)
Heart Rate , Nephropidae , Animals , Nephropidae/physiology , Heart Rate/physiology , Temperature , Oxygen Consumption/physiology , Maine , Hot Temperature
3.
PLoS One ; 17(4): e0266544, 2022.
Article in English | MEDLINE | ID: mdl-35363833

ABSTRACT

OBJECTIVES: To examine whether the demographics of providers' prior year patient cohorts, providers' historic degree of catheter-based fractional flow reserve (FFR) utilization, and other provider characteristics were associated with post-catheterization performance of percutaneous coronary intervention (PCI) or coronary artery bypass grafting (CABG). STUDY DESIGN: A retrospective, observational analysis of outpatient claims data was performed. METHODS: All 2018 outpatient catheterization claims from a national organization offering commercial and Medicare Advantage health plans were examined. Claims were excluded if the patient had a prior catheterization in 2018, had any indications of CABG or valvular heart disease in the prior year of claims, or if the provider had ≤10 catheterization claims in 2017. Downstream PCI and CABG were determined by examining claims 0-30 days post-catheterization. Using multivariate mixed effects logistic regression with provider identity random effects, the association between post-catheterization procedures and provider characteristics was assessed, controlling for patient characteristics. RESULTS: The sample consisted of 31,920 catheterization claims pertaining to procedures performed by 964 providers. Among the catheterization claims, 8,554 (26.8%) were followed by PCI and 1,779 (5.6%) were followed by CABG. Catheterizations performed by providers with older prior year patient cohorts were associated with higher adjusted odds of PCI (1.78; CI: 1.26-2.53), even after controlling for patient age. Catheterizations performed by providers with greater historic use of FFR had significantly higher adjusted odds of being followed by PCI (1.73; CI: 1.26-2.37). CONCLUSION: Provider characteristics may impact whether patients receive a procedure post-catheterization. Further research is needed to characterize this relationship.


Subject(s)
Coronary Artery Disease , Fractional Flow Reserve, Myocardial , Percutaneous Coronary Intervention , Aged , Cardiac Catheterization , Humans , Medicare , Percutaneous Coronary Intervention/methods , Retrospective Studies , Risk Factors , Treatment Outcome , United States
4.
Sci Rep ; 11(1): 23561, 2021 12 07.
Article in English | MEDLINE | ID: mdl-34876606

ABSTRACT

N-glycosylation plays an important role in the structure and function of membrane and secreted proteins. The spike protein on the surface of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes COVID-19, is heavily glycosylated and the major target for developing vaccines, therapeutic drugs and diagnostic tests. The first major SARS-CoV-2 variant carries a D614G substitution in the spike (S-D614G) that has been associated with altered conformation, enhanced ACE2 binding, and increased infectivity and transmission. In this report, we used mass spectrometry techniques to characterize and compare the N-glycosylation of the wild type (S-614D) or variant (S-614G) SARS-CoV-2 spike glycoproteins prepared under identical conditions. The data showed that half of the N-glycosylation sequons changed their distribution of glycans in the S-614G variant. The S-614G variant showed a decrease in the relative abundance of complex-type glycans (up to 45%) and an increase in oligomannose glycans (up to 33%) on all altered sequons. These changes led to a reduction in the overall complexity of the total N-glycosylation profile. All the glycosylation sites with altered patterns were in the spike head while the glycosylation of three sites in the stalk remained unchanged between S-614G and S-614D proteins.


Subject(s)
Glycopeptides/analysis , Mass Spectrometry/methods , SARS-CoV-2/metabolism , Spike Glycoprotein, Coronavirus/metabolism , Angiotensin-Converting Enzyme 2/chemistry , Angiotensin-Converting Enzyme 2/metabolism , COVID-19/pathology , COVID-19/virology , Chromatography, High Pressure Liquid , Glycosylation , Humans , Mutation , Protein Binding , Protein Structure, Tertiary , SARS-CoV-2/isolation & purification , Spike Glycoprotein, Coronavirus/chemistry
5.
PLoS One ; 16(12): e0260487, 2021.
Article in English | MEDLINE | ID: mdl-34910739

ABSTRACT

At the start of the COVID-19 pandemic, the Centers for Disease Control and Prevention (CDC) designed, manufactured, and distributed the CDC 2019-Novel Coronavirus (2019-nCoV) Real-Time RT-PCR Diagnostic Panel for SARS-CoV-2 detection. The diagnostic panel targeted three viral nucleocapsid gene loci (N1, N2, and N3 primers and probes) to maximize sensitivity and to provide redundancy for virus detection if mutations occurred. After the first distribution of the diagnostic panel, state public health laboratories reported fluorescent signal in the absence of viral template (false-positive reactivity) for the N3 component and to a lesser extent for N1. This report describes the findings of an internal investigation conducted by the CDC to identify the cause(s) of the N1 and N3 false-positive reactivity. For N1, results demonstrate that contamination with a synthetic template, that occurred while the "bulk" manufactured materials were located in a research lab for quality assessment, was the cause of false reactivity in the first lot. Base pairing between the 3' end of the N3 probe and the 3' end of the N3 reverse primer led to amplification of duplex and larger molecules resulting in false reactivity in the N3 assay component. We conclude that flaws in both assay design and handling of the "bulk" material, caused the problems with the first lot of the 2019-nCoV Real-Time RT-PCR Diagnostic Panel. In addition, within this study, we found that the age of the examined diagnostic panel reagents increases the frequency of false positive results for N3. We discuss these findings in the context of improvements to quality control, quality assurance, and assay validation practices that have since been improved at the CDC.


Subject(s)
COVID-19 , DNA Primers , False Positive Reactions , Humans , Reverse Transcriptase Polymerase Chain Reaction , SARS-CoV-2
6.
Sci Rep ; 11(1): 12330, 2021 06 10.
Article in English | MEDLINE | ID: mdl-34112850

ABSTRACT

SARS-CoV-2 emerged in late 2019 and has since spread around the world, causing a pandemic of the respiratory disease COVID-19. Detecting antibodies against the virus is an essential tool for tracking infections and developing vaccines. Such tests, primarily utilizing the enzyme-linked immunosorbent assay (ELISA) principle, can be either qualitative (reporting positive/negative results) or quantitative (reporting a value representing the quantity of specific antibodies). Quantitation is vital for determining stability or decline of antibody titers in convalescence, efficacy of different vaccination regimens, and detection of asymptomatic infections. Quantitation typically requires two-step ELISA testing, in which samples are first screened in a qualitative assay and positive samples are subsequently analyzed as a dilution series. To overcome the throughput limitations of this approach, we developed a simpler and faster system that is highly automatable and achieves quantitation in a single-dilution screening format with sensitivity and specificity comparable to those of ELISA.


Subject(s)
Antibodies, Viral/blood , COVID-19/blood , SARS-CoV-2/isolation & purification , Animals , Antibodies, Viral/immunology , COVID-19/diagnosis , COVID-19/immunology , COVID-19 Serological Testing/economics , COVID-19 Serological Testing/methods , Enzyme-Linked Immunosorbent Assay/economics , Enzyme-Linked Immunosorbent Assay/methods , Humans , Immunoglobulin G/blood , Immunoglobulin G/immunology , Immunoglobulin M/blood , Immunoglobulin M/immunology , Mice , SARS-CoV-2/immunology
7.
Sci Rep ; 11(1): 9682, 2021 05 06.
Article in English | MEDLINE | ID: mdl-33958613

ABSTRACT

The need for high-affinity, SARS-CoV-2-specific monoclonal antibodies (mAbs) is critical in the face of the global COVID-19 pandemic, as such reagents can have important diagnostic, research, and therapeutic applications. Of greatest interest is the ~ 300 amino acid receptor binding domain (RBD) within the S1 subunit of the spike protein because of its key interaction with the human angiotensin converting enzyme 2 (hACE2) receptor present on many cell types, especially lung epithelial cells. We report here the development and functional characterization of 29 nM-affinity mouse SARS-CoV-2 mAbs created by an accelerated immunization and hybridoma screening process. Differing functions, including binding of diverse protein epitopes, viral neutralization, impact on RBD-hACE2 binding, and immunohistochemical staining of infected lung tissue, were correlated with variable gene usage and sequence.


Subject(s)
Antibodies, Monoclonal/immunology , Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , COVID-19/immunology , SARS-CoV-2/immunology , Animals , COVID-19/diagnosis , COVID-19 Serological Testing , Epitopes/immunology , Female , Humans , Immunization , Mice , Mice, Inbred BALB C , Models, Molecular , SARS-CoV-2/isolation & purification , Spike Glycoprotein, Coronavirus/immunology
8.
J Virol Methods ; 287: 114004, 2021 01.
Article in English | MEDLINE | ID: mdl-33098957

ABSTRACT

Zika virus (ZIKV) infection remains a public health concern necessitating demand for long-term virus production for diagnostic assays and R&D activities. Inactivated virus constitutes an important component of the Trioplex rRT-PCR assay and serological IgM assay (MAC-ELISA). The aim of our study is to establish standard methods of ZIKV inactivation while maintaining antigenicity and RNA integrity. We tested viral supernatants by four different inactivation methods: 1. Heat inactivation at 56 °C and 60 °C; 2. Gamma-Irradiation; 3. Chemical inactivation by Beta-propiolactone (BPL) and 4. Fast-acting commercial disinfecting agents. Effectivity was measured by cytopathic effect (CPE) and plaque assay. RNA stability and antigenicity were measured by RT-PCR and MAC-ELISA, respectively. Results: Heat inactivation: Low titer samples, incubated at 56 °C for 2 h, showed neither CPE or plaques compared to high titer supernatants that required 2.5 h. Inactivation occurred at 60 °C for 60 min with all virus titers. Gamma irradiation: Samples irradiated at ≥3 Mrad for low virus concentrations and ≥5Mrad for high virus titer completely inactivated virus. Chemical Inactivation: Neither CPE nor plaques were observed with ≥0.045 % BPL inactivation of ZIKV. Disinfectant: Treatment of viral supernatants with Micro-Chem Plus™, inactivated virus in 2 min, whereas, Ethanol (70 %) and STERIS Coverage® Spray TB inactivated the virus in 5 min.


Subject(s)
Zika Virus Infection , Zika Virus , Disinfection , Humans , Indicators and Reagents , Virus Inactivation , Zika Virus Infection/diagnosis
9.
Infect Immun ; 88(4)2020 03 23.
Article in English | MEDLINE | ID: mdl-31964750

ABSTRACT

Human genital Chlamydia infection is a major public health concern due to the serious reproductive system complications. Chlamydia binds several receptor tyrosine kinases (RTKs) on host cells, including the epidermal growth factor receptor (EGFR), and activates cellular signaling cascades for host invasion, cytoskeletal remodeling, optimal inclusion development, and induction of pathogenic epithelial-mesenchyme transition (EMT). Chlamydia also upregulates transforming growth factor beta (TGF-ß) expression, whose signaling pathway synergizes with the EGFR cascade, but its role in infectivity, inclusions, and EMT induction is unknown. We hypothesized that the EGFR and TGF-ß signaling pathways cooperate during chlamydial infection for optimal inclusion development and stable EMT induction. The results revealed that Chlamydia upregulated TGF-ß expression as early as 6 h postinfection of epithelial cells and stimulated both the EGFR and TGF-ß signaling pathways. Inhibition of either the EGFR or TGF-ßR1 signaling substantially reduced inclusion development; however, the combined inhibition of both EGFR and TGF-ßR1 signaling reduced inclusions by over 90% and prevented EMT induction. Importantly, EGFR inhibition suppressed TGF-ß expression, and an inhibitory thrombospondin-1 (Tsp1)-based peptide inhibited chlamydia-induced EMT, revealing a major source of active TGF-ß during infection. Finally, TGF-ßR signaling inhibition suppressed the expression of transforming acidic coiled-coil protein-3 (TACC3), which stabilizes EGFR signaling, suggesting reciprocal regulation between TGF-ß and EGFR signaling during chlamydial infection. Thus, RTK-mediated host invasion by chlamydia upregulated TGF-ß expression and signaling, which cooperated with other cellular signaling cascades and cytoskeletal remodeling to support optimal inclusion development and EMT induction. This finding may provide new targets for chlamydial disease biomarkers and prevention.


Subject(s)
Chlamydia Infections/physiopathology , Chlamydia/growth & development , Epithelial Cells/microbiology , ErbB Receptors/metabolism , Host-Pathogen Interactions , Signal Transduction , Transforming Growth Factor beta/metabolism , Animals , Cell Line , Endocytosis , Epithelial-Mesenchymal Transition , Inclusion Bodies/microbiology , Mice , Models, Biological
10.
Ecology ; 100(10): e02813, 2019 10.
Article in English | MEDLINE | ID: mdl-31291466

ABSTRACT

The generality of ecological patterns depends inextricably on the scale at which they are examined. We investigated patterns of crab distribution and the relationship between crabs and vegetation in salt marshes at multiple scales. By using consistent monitoring protocols across 15 U.S. National Estuarine Research Reserves, we were able to synthesize patterns from the scale of quadrats to the entire marsh landscape to regional and national scales. Some generalities emerged across marshes from our overall models, and these are useful for informing broad coastal management policy. We found that crab burrow distribution within a marsh could be predicted by marsh elevation, distance to creek and soil compressibility. While these physical factors also affected marsh vegetation cover, we did not find a strong or consistent overall effect of crabs at a broad scale in our multivariate model, though regressions conducted separately for each site revealed that crab burrows were negatively correlated with vegetation cover at 4 out of 15 sites. This contrasts with recent smaller-scale studies and meta-analyses synthesizing such studies that detected strong negative effects of crabs on marshes, likely because we sampled across the entire marsh landscape, while targeted studies are typically limited to low-lying areas near creeks, where crab burrow densities are highest. Our results suggest that sea-level rise generally poses a bigger threat to marshes than crabs, but there will likely be interactions between these physical and biological factors. Beyond these generalities across marshes, we detected some regional differences in crab community composition, richness, and abundance. However, we found striking differences among sites within regions, and within sites, in terms of crab abundance and relationships to marsh integrity. Although generalities are broadly useful, our findings indicate that local managers cannot rely on data from other nearby systems, but rather need local information for developing salt marsh management strategies.


Subject(s)
Brachyura , Wetlands , Animals , Ecology , Soil
11.
PeerJ ; 7: e6952, 2019.
Article in English | MEDLINE | ID: mdl-31143555

ABSTRACT

Most marine crustacean eggs contain the full complement of nutritional resources required to fuel their growth and development. Given the propensity of many ovigerous (egg-bearing) American lobsters (Homarus americanus) to undergo seasonal inshore-to-offshore migrations, thereby potentially exposing their eggs to varying thermal regimes, the goal of this study was to determine the impact of water temperature on egg quality over their course of development. This was accomplished by documenting changes in total lipids, proteins, and size (volume) of eggs subjected to one of three thermal regimes: inshore, offshore, and constant (16 °C) conditions. Total egg lipids showed a marked decrease over time, while protein levels increased over the same period. Although there were no significant differences in total lipids, proteins, or egg sizes between eggs exposed to inshore and offshore temperatures, they differed from values for eggs exposed to a constant temperature, which also hatched almost three months sooner. This is most likely due to the fact that eggs held at a constant temperature did not experience a period of slow development during the colder months from November to March that are important for synchronizing egg hatch and may be compromised by elevated seawater temperatures.

12.
Anal Bioanal Chem ; 411(12): 2493-2509, 2019 May.
Article in English | MEDLINE | ID: mdl-30911800

ABSTRACT

Inhalation of Bacillus anthracis spores can cause a rapidly progressing fatal infection. B. anthracis secretes three protein toxins: lethal factor (LF), edema factor (EF), and protective antigen (PA). EF and LF may circulate as free or PA-bound forms. Both free EF (EF) and PA-bound-EF (ETx) have adenylyl cyclase activity converting ATP to cAMP. We developed an adenylyl cyclase activity-based method for detecting and quantifying total EF (EF+ETx) in plasma. The three-step method includes magnetic immunocapture with monoclonal antibodies, reaction with ATP generating cAMP, and quantification of cAMP by isotope-dilution HPLC-MS/MS. Total EF was quantified from 5PL regression of cAMP vs ETx concentration. The detection limit was 20 fg/mL (225 zeptomoles/mL for the 89 kDa protein). Relative standard deviations for controls with 0.3, 6.0, and 90 pg/mL were 11.7-16.6% with 91.2-99.5% accuracy. The method demonstrated 100% specificity in 238 human serum/plasma samples collected from unexposed healthy individuals, and 100% sensitivity in samples from 3 human and 5 rhesus macaques with inhalation anthrax. Analysis of EF in the rhesus macaques showed that it was detected earlier post-exposure than B. anthracis by culture and PCR. Similar to LF, the kinetics of EF over the course of infection were triphasic, with an initial rise (phase-1), decline (phase-2), and final rapid rise (phase-3). EF levels were ~ 2-4 orders of magnitude lower than LF during phase-1 and phase-2 and only ~ 6-fold lower at death/euthanasia. Analysis of EF improves early diagnosis and adds to our understanding of anthrax toxemia throughout infection. The LF/EF ratio may also indicate the stage of infection and need for advanced treatments.


Subject(s)
Anthrax/pathology , Antigens, Bacterial/blood , Bacillus anthracis/pathogenicity , Bacterial Toxins/blood , Chromatography, High Pressure Liquid/methods , Respiratory Tract Infections/pathology , Tandem Mass Spectrometry/methods , Toxemia/pathology , Adenosine Triphosphate/metabolism , Animals , Anthrax/blood , Case-Control Studies , Cyclic AMP/biosynthesis , Disease Progression , Enzyme-Linked Immunosorbent Assay , Humans , Limit of Detection , Macaca mulatta , Polymerase Chain Reaction , Respiratory Tract Infections/blood , Toxemia/blood , Toxemia/microbiology
13.
JIMD Rep ; 44: 9-15, 2019.
Article in English | MEDLINE | ID: mdl-29923087

ABSTRACT

Transaldolase deficiency (MIM#: 606003) is a rare autosomal recessive defect in the pentose phosphate pathway. Affected individuals are at risk for progressive liver failure and hepatocarcinoma. In the transaldolase-deficient mouse model (Taldo1 -/-), these hepatic complications are accentuated by oxidative stress related to acetaminophen administration. We report a 13-month-old transaldolase-deficient male who developed mild liver failure after receiving standard doses of acetaminophen during a febrile respiratory syncytial virus infection. He was admitted for respiratory distress with neutropenia and thrombocytopenia, but developed an enlarged nodular liver with accompanying splenomegaly and rising alpha-fetoprotein which peaked 2 weeks after acetaminophen exposure. Whole exome sequencing revealed compound heterozygous variants c.512_514delCCT (p.Ser171del) and c.931G > T (p.Gly311Trp) in TALDO1 (HGNC:11559), which encodes transaldolase (EC 2.2.1.2), a key enzyme in ribose metabolism. Urine polyols and plasma metabolomics confirmed the diagnosis of transaldolase deficiency. Studies on the Taldo1 -/- mouse model demonstrate acetaminophen-induced liver failure can be prevented by administration of the antioxidant N-acetylcysteine. Moreover, a published report showed treatment of a transaldolase-deficient patient with N-acetylcysteine was associated with a decrease in alpha-fetoprotein levels. After discontinuation of acetaminophen and prior to initiation of N-acetylcysteine treatment, our patient demonstrated resolving alpha-fetoprotein levels suggesting acetaminophen incited the liver failure. Conclusion: Our observations support the conclusion from mouse model studies that transaldolase-deficient patients are uniquely sensitive to acetaminophen and should avoid this antipyretic. Recognition of this individualized toxicity and avoidance of acetaminophen are essential for management of these patients.

14.
Biochem Biophys Res Commun ; 508(2): 421-429, 2019 01 08.
Article in English | MEDLINE | ID: mdl-30503337

ABSTRACT

The unfolded protein response (UPR) contributes to chlamydial pathogenesis, as a source of lipids and ATP during replication, and for establishing the initial anti-apoptotic state of host cell that ensures successful inclusion development. The molecular mechanism(s) of UPR induction by Chlamydia is unknown. Chlamydia use type III secretion system (T3SS) effector proteins (e.g, the Translocated Actin-Recruiting Phosphoprotein (Tarp) to stimulate host cell's cytoskeletal reorganization that facilitates invasion and inclusion development. We investigated the hypothesis that T3SS effector-mediated assembly of myosin-II complex produces activated non-muscle myosin heavy chain II (NMMHC-II), which then binds the UPR master regulator (BiP) and/or transducers to induce UPR. Our results revealed the interaction of the chlamydial effector proteins (CT228 and Tarp) with components of the myosin II complex and UPR regulator and transducer during infection. These interactions caused the activation and binding of NMMHC-II to BiP and IRE1α leading to UPR induction. In addition, specific inhibitors of myosin light chain kinase, Tarp oligomerization and myosin ATPase significantly reduced UPR activation and Chlamydia replication. Thus, Chlamydia induce UPR through T3SS effector-mediated activation of NMMHC-II components of the myosin complex to facilitate infectivity. The finding provides greater insights into chlamydial pathogenesis with the potential to identify therapeutic targets and formulations.


Subject(s)
Chlamydia muridarum/pathogenicity , Chlamydia trachomatis/pathogenicity , Host Microbial Interactions/physiology , Unfolded Protein Response/physiology , Animals , Chlamydia Infections/etiology , Chlamydia Infections/metabolism , Chlamydia Infections/microbiology , Chlamydia muridarum/metabolism , Chlamydia trachomatis/metabolism , HeLa Cells , Humans , Inclusion Bodies/metabolism , Mice , Myosin Type II/metabolism , Type III Secretion Systems/metabolism
15.
Biosens Bioelectron ; 100: 85-88, 2018 Feb 15.
Article in English | MEDLINE | ID: mdl-28865242

ABSTRACT

We have developed a cost-effective and portable graphene-enabled biosensor to detect Zika virus with a highly specific immobilized monoclonal antibody. Field Effect Biosensing (FEB) with monoclonal antibodies covalently linked to graphene enables real-time, quantitative detection of native Zika viral (ZIKV) antigens. The percent change in capacitance in response to doses of antigen (ZIKV NS1) coincides with levels of clinical significance with detection of antigen in buffer at concentrations as low as 450pM. Potential diagnostic applications were demonstrated by measuring Zika antigen in a simulated human serum. Selectivity was validated using Japanese Encephalitis NS1, a homologous and potentially cross-reactive viral antigen. Further, the graphene platform can simultaneously provide the advanced quantitative data of nonclinical biophysical kinetics tools, making it adaptable to both clinical research and possible diagnostic applications. The speed, sensitivity, and selectivity of this first-of-its-kind graphene-enabled Zika biosensor make it an ideal candidate for development as a medical diagnostic test.


Subject(s)
Antibodies, Immobilized/chemistry , Antigens, Viral/analysis , Biosensing Techniques/methods , Graphite/chemistry , Zika Virus Infection/diagnosis , Zika Virus/isolation & purification , Antigens, Viral/blood , Biosensing Techniques/instrumentation , Equipment Design , Humans , Immunoassay/instrumentation , Immunoassay/methods , Sensitivity and Specificity , Zika Virus Infection/blood , Zika Virus Infection/virology
16.
Infect Immun ; 86(1)2018 01.
Article in English | MEDLINE | ID: mdl-29084894

ABSTRACT

The reproductive system complications of genital chlamydial infection include fallopian tube fibrosis and tubal factor infertility. However, the molecular pathogenesis of these complications remains poorly understood. The induction of pathogenic epithelial-mesenchymal transition (EMT) through microRNA (miRNA) dysregulation was recently proposed as the pathogenic basis of chlamydial complications. Focusing on fibrogenesis, we investigated the hypothesis that chlamydia-induced fibrosis is caused by EMT-driven generation of myofibroblasts, the effector cells of fibrosis that produce excessive extracellular matrix (ECM) proteins. The results revealed that the targets of a major category of altered miRNAs during chlamydial infection are key components of the pathophysiological process of fibrogenesis; these target molecules include collagen types I, III, and IV, transforming growth factor ß (TGF-ß), TGF-ß receptor 1 (TGF-ßR1), connective tissue growth factor (CTGF), E-cadherin, SRY-box 7 (SOX7), and NFAT (nuclear factor of activated T cells) kinase dual-specificity tyrosine (Y) phosphorylation-regulated kinase 1a (Dyrk1a). Chlamydial induction of EMT resulted in the generation of α-smooth muscle actin (α-SMA)-positive myofibroblasts that produced ECM proteins, including collagen types I and III and fibronectin. Furthermore, the inhibition of EMT prevented the generation of myofibroblasts and production of ECM proteins during chlamydial infection. These findings may provide useful avenues for targeting EMT or specific components of the EMT pathways as a therapeutic intervention strategy to prevent chlamydia-related complications.


Subject(s)
Chlamydia Infections/complications , Chlamydia Infections/pathology , Chlamydia/pathogenicity , Epithelial-Mesenchymal Transition/physiology , Fibrosis/etiology , Fibrosis/pathology , Actins/metabolism , Animals , Cadherins/metabolism , Cell Line , Chlamydia Infections/microbiology , Collagen/metabolism , Connective Tissue Growth Factor/metabolism , Extracellular Matrix Proteins/metabolism , Fibronectins/metabolism , Fibrosis/microbiology , Mice , MicroRNAs/metabolism , Myofibroblasts/microbiology , Myofibroblasts/pathology , NFATC Transcription Factors/metabolism , Protein Serine-Threonine Kinases/metabolism , Protein-Tyrosine Kinases/metabolism , Receptor, Transforming Growth Factor-beta Type I , Receptors, Transforming Growth Factor beta/metabolism , SOXF Transcription Factors/metabolism , Transforming Growth Factor beta/metabolism
17.
Mol Microbiol ; 99(3): 586-96, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26480895

ABSTRACT

HtrA serine proteases are highly conserved and essential ATP-independent proteases with chaperone activity. Bacteria express a variable number of HtrA homologues that contribute to the virulence and pathogenicity of bacterial pathogens. Lyme disease spirochetes possess a single HtrA protease homologue, Borrelia burgdorferi HtrA (BbHtrA). Previous studies established that, like the human orthologue HtrA1, BbHtrA is proteolytically active against numerous extracellular proteins in vitro. In this study, we utilized size exclusion chromatography and blue native polyacrylamide gel electrophoresis (BN-PAGE) to demonstrate BbHtrA oligomeric structures that were substrate independent and salt sensitive. Examination of the influence of transition metals on the activity of BbHtrA revealed that this protease is inhibited by Zn(2+) > Cu(2+) > Mn(2+). Extending this analysis to two other HtrA proteases, E. coli DegP and HtrA1, revealed that all three HtrA proteases were reversibly inhibited by ZnCl2 at all micro molar concentrations examined. Commercial inhibitors for HtrA proteases are not available and physiologic HtrA inhibitors are unknown. Our observation of conserved zinc inhibition of HtrA proteases will facilitate structural and functional studies of additional members of this important class of proteases.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Borrelia burgdorferi/enzymology , Chlorides/metabolism , Enzyme Inhibitors/metabolism , Serine Endopeptidases/chemistry , Serine Endopeptidases/metabolism , Zinc Compounds/metabolism , Zinc/metabolism , Bacterial Proteins/genetics , Borrelia burgdorferi/chemistry , Borrelia burgdorferi/genetics , Borrelia burgdorferi/metabolism , Chlorides/chemistry , Enzyme Inhibitors/chemistry , Humans , Kinetics , Lyme Disease/microbiology , Serine Endopeptidases/genetics , Zinc/chemistry , Zinc Compounds/chemistry
18.
Exp Parasitol ; 156: 61-7, 2015 Sep.
Article in English | MEDLINE | ID: mdl-25980370

ABSTRACT

Balamuthia mandrillaris is a free-living ameba (FLA) that has been isolated or its DNA identified in soil, dust and water. It causes a fatal central nervous system infection in humans and animals. Although it is environmental as Acanthamoeba and Naegleria fowleri, the two other free-living amebae that also cause CNS infections in humans and other animals, Balamuthia does not feed on bacteria as the other FLA. In the laboratory, it can be grown on a variety of mammalian cell cultures. In this study we examined the ability of three different Balamuthia isolates to grow on several different human skin cell cultures including the WT/A keratinocyte cell cultures. A corneal isolate of Acanthamoeba castellanii was used for comparison.


Subject(s)
Balamuthia mandrillaris/growth & development , Skin/parasitology , Acanthamoeba castellanii/growth & development , Acanthamoeba castellanii/pathogenicity , Animals , Balamuthia mandrillaris/pathogenicity , Cell Line , Child , Endothelium, Vascular/cytology , Endothelium, Vascular/parasitology , Female , Fibroblasts/cytology , Fibroblasts/parasitology , Humans , Keratinocytes/parasitology , Lung/cytology , Lung/parasitology , Papio , Pregnancy , Skin/cytology , Soil/parasitology
19.
Biol Bull ; 228(1): 1-12, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25745096

ABSTRACT

Some egg-bearing (ovigerous) American lobsters (Homarus americanus) make seasonal inshore-to-offshore movements, subjecting their eggs to different thermal regimes than those of eggs carried by lobsters that do not make these movements. Our goal was to determine if differences in thermal regimes influence the rate of egg development and the subsequent time of hatch. We subjected ovigerous lobsters to typical inshore or offshore water temperatures from September to August in the laboratory (n=8 inshore and 8 offshore, each year) and in the field (n=8 each, inshore and offshore), over 2 successive years. Although the rate of egg development did not differ significantly between treatments in the fall (P∼0.570), eggs exposed to inshore thermal regimes developed faster in the spring (P<0.001). "Inshore" eggs hatched about 30 days earlier (mean=26 June) than "offshore" eggs (mean=27 July), and their time of development from the onset of eyespot to hatch was significantly shorter (inshore=287±11 days vs. offshore: 311.5±7.5 days, P=0.034). Associated growing degree-days (GDD) did not differ significantly between inshore and offshore thermal treatments (P=0.061). However, eggs retained by lobsters exposed to offshore thermal regimes accumulated more GDD in the winter than did eggs carried by inshore lobsters, while eggs exposed to inshore temperatures acquired them more rapidly in the spring. Results suggest that seasonal movements of ovigerous lobsters influence the time and location of hatching, and thus the transport and recruitment of larvae to coastal and offshore locations.


Subject(s)
Nephropidae/physiology , Temperature , Animals , Atlantic Ocean , Nephropidae/embryology , Nephropidae/growth & development , Seasons , United States , Zygote/growth & development
20.
Virology ; 464-465: 264-273, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25108113

ABSTRACT

The eradication of smallpox and the cessation of global vaccination led to the increased prevalence of human infections in Central Africa. Serologic and protein-based diagnostic assay for MPXV detection is difficult due to cross-reactive antibodies that do not differentiate between diverse orthopoxvirus (OPXV) species. A previously characterized monoclonal antibody (mAb 69-126-3-7) against MPXV [1] was retested for cross-reactivity with various OPXVs. The 14.5 kDa band protein that reacted with mAb 69-126-3 was identified to be MPXV A29 protein (homolog of vaccinia virus Copenhagen A27). Amino acid sequence analysis of the MPXV A29 with other OPXV homologs identified four amino acid changes. Peptides corresponding to these regions were designed and evaluated for binding to mAb 69-126-3 by ELISA and BioLayer Interferometry (BLI). Further refinement and truncations mapped the specificity of this antibody to a single amino acid difference in a 30-mer peptide compared to other OPXV homologs. This particular residue is proposed to be essential for heparin binding by VACV A27 protein. Despite this substitution, MPXV A29 bound to heparin with similar affinity to that of VACV A27 protein, suggesting flexibility of this motif for heparin binding. Although binding of mAb 69-126-3-7 to MPXV A29 prevented interaction with heparin, it did not have any effect on the infectivity of MPXV. Characterization of 69-126-3-7 mAb antibody allows for the possibility of the generation of a serological based species-specific detection of OPXVs despite high proteomic homology.


Subject(s)
Antibodies, Monoclonal/immunology , Antibodies, Viral/immunology , Heparin/immunology , Monkeypox virus/immunology , Mpox (monkeypox)/virology , Viral Proteins/immunology , Amino Acid Sequence , Cross Reactions , Humans , Molecular Sequence Data , Mpox (monkeypox)/immunology , Monkeypox virus/chemistry , Protein Structure, Tertiary , Sequence Alignment , Viral Proteins/chemistry
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