Analysis of biomolecules in cochineal dyed archaeological textiles by surface-enhanced Raman spectroscopy.

SERS spectroscopy is successfully employed in this work to reveal different components integrating the cochineal colorant employed for dying archaeological textile samples from the Arica Region in North Chile. This analysis was done by in-situ experiments that does not imply the material (colorant and biomolecules) extraction. The spectroscopic analysis of the archaeological textiles by SERS reveals the presence of bands attributed to carminic acid and nucleobases, mainly adenine and guanine. The identification of these biomolecules was also verified in raw cochineal extract and in cochineal dyed replica wool fibers fabricated by us following ancient receipts. The effect of Al on the complexation of carminic acid and other biomolecules was also tested in order to understand the changes induced by the metal interaction on the colorant structure. This study revealed that Al can also complex biomolecules existing in the cochineal extract. In particular, guanine residue seems to interact strongly with the metal, since SERS bands of this residue are enhanced. Furthermore, a theoretical analysis on the interaction of carminic acid and a silver surface was also performed in order to better understand the interaction mechanism between carminic acid and a metal surface that leads to the final SERS spectrum. The results of the present work will be very useful in the identification of different molecules and metal complexes that may be forming part of the cochineal colorant found in archaeological materials.

Interaction of the CLPFFD peptide with gold nanospheres. A Raman, surface enhanced Raman scattering and theoretical study.

In a previous work we demonstrated that toxic aggregates of the protein ß-amyloid (ATAß) involved in the Alzheimer's disease (AD) can be destabilized upon electromagnetic irradiation of the peptide Cys-Leu-Pro-Phe-Phe-Asp (CLPFFD) adsorbed on gold nanospheres (AuNSs). For a selective recognition of the therapeutic target (i.e. ATAß) of AD by the conjugates peptide-nanoparticle it is relevant to understand how the interaction between attached ligands and nanoparticles occurs. In this work a surface enhanced Raman scattering spectroscopy (SERS) study of the interactions of CLPFFD with AuNSs of 10nm average diameter was carried out. The SERS data suggest that phenylalanine displays its aromatic ring coplanar to the surface which is supported by theoretical data obtained from molecular mechanics (MM) and Extended Hückel Theory (EHT) calculations.

Surface enhanced Raman scattering study of the antioxidant alkaloid boldine using prismatic silver nanoparticles.

Prismatic silver nanoparticles (PNps) were used in the surface enhanced Raman scattering (SERS) study of the antioxidant alkaloid boldine (5,6,6a,7-tetrahydro-1,10-dimethoxy-6-methyl-4H-dibenzo[de,g]quinoline-2,9-diol). Prismatic and quasi-spherical (QsNps) silver nanoparticles were synthesized and characterized by UV-Vis spectra, topographic profile (AFM) and zeta potential measurements. Raman and infrared (IR) spectra of the boldine were registered. Theoretical model calculations of the boldine onto the Ag surface predict a nearly coplanar orientation of the benzo[de]quinoline moiety and non-bonded interactions (electrostatic).

Surface-enhanced Raman scattering and theoretical studies of the C-terminal peptide of the ß-subunit human chorionic gonadotropin without linked carbohydrates.

Raman and surface-enhanced Raman scattering (SERS) spectra of the synthetic carboxy terminal peptide of human chorionic gonadatropin ß-subunit free of carbohydrate moieties(P37) are reported. The spectral analysis is performed on the basis of our reported Raman spectrum and SERS data of oligopeptides displaying selected amino acids sequences MRKDV, ADEDRDA, and LGRGISL. SERS samples of P37 were prepared by coating the solid peptide with metal colloids on a quartz slide. This treatment makes possible to obtain high spectral batch to batch reproducibility. Amino acids components of P37 display net charges and hydrophobic characteristics, which are related to particular structural aspects of the adsorbate-substrate interaction. The spectroscopic results are supported by quantum chemical calculations performed by using extended Hückel theory method for a model of P37 interacting with an Ag surface. The P37-metal interaction is drove by positively charged fragments of selected amino acids,mainly threonine 109, lysine 122, and arginine in positions 114 and 133. Data here reported intend to contribute to the knowledge about the antigen-antibody interaction and to the drugs delivery research area

SERS and theoretical studies of arginine.

Arginine amino acid (Arg) has been vibrationally studied through its infrared, Raman and surface-enhanced Raman scattering (SERS) spectra, and theoretical calculations. Net charge is used to predict the possibility to obtain the SERS spectrum of Arg in colloidal solution. The interpretation of the SERS spectral data suggests that the Arg-Ag nanoparticles interaction in a colloidal solution and in the case of the Arg coated by Ag is mainly verified through the guanidinium moiety. Theoretical calculations performed by using extended Hückel theory method for a model of Arg interacting with an Ag cluster support the observed SERS experimental result.

Functionalization of Ag nanoparticles with the bis-acridinium lucigenin as a chemical assembler in the detection of persistent organic pollutants by surface-enhanced Raman scattering.

Organochlorine pesticide endosulfan has been detected for the first time by using surface-enhanced Raman scattering (SERS) at trace concentrations. The bis-acridinium dication lucigenine was successfully used as a molecular assembler in the functionalization of metal nanoparticles to facilitate the approach of the pesticide to the metal surface. From the SERS spectra valuable information about the interaction mechanism between the pesticide and lucigenin can be deduced. In fact, endosulfan undergoes an isomerization upon adsorption onto the metal, while the viologen undergoes a rotation of the acridinium planes to better accommodate the pesticide molecule. An interaction between the N atom of the central acridinium ring and the pesticide Cl-CC-Cl fragment is verified through a charge-transfer complex. The present study affords important information which can be applied to the design of chemical sensor systems of persistent organic pollutants based on the optical detection on functionalized metal nanoparticle.

Carbon nanotube bundles as molecular assemblies for the detection of polycyclic aromatic hydrocarbons: surface-enhanced resonance Raman spectroscopy and theoretical studies.

In this work surface-enhanced resonance Raman spectroscopic experiments have demonstrated that metallic single-walled carbon nanotubes can be used as chemical assemblies between the pyrene analyte and the silver colloidal surface. Pyrene has been detected at concentrations lower than 10(-9) M by use of the 514.5 nm excitation laser line. A charge transfer from the surface to the nanotube characterizes the nanotube-silver surface interaction. The pyrene-nanotube interaction occurs through a pi-pi electronic stacking. Extended Hückel calculations based on a simplified molecular model for the analyte/nanotube/surface system support the experimental conclusions. The nanotube-pyrene distance is 3.4 A, and the most probable orientation for pyrene is confirmed to be plane parallel to the nanotube surface. An energy transfer from the silver surface to the nanotube/analyte system is verified.

The use of competitive ligand binding results in QSAR studies.

The use in QSAR studies of parameters measuring the ability of an unlabeled molecule to compete for the binding site with a radioligand is examined. It is shown that in order to employ them within a recently developed formal model it is previously necessary to carry out a linear transformation. This necessarily demands the adoption by investigators of a standard measuring procedure.

Quantum chemical approach to the relationship between molecular structure and serotonin receptor binding affinity.

We have analyzed the dependence of the serotonin receptor binding affinity on the atomic net charges, superdelocalizabilities, mass, and moment of inertia in a group of indole derivatives. The approaches employed are a new nonempirical quantitative structure-activity relationship (QSAR) method and multiple regression analyses. The results suggest that the indole derivatives interact with the receptor through a charge transfer between the phenyl ring and a counterpart in the receptor, plus some localized electrostatic interactions. Also, the fit of the equation obtained suggests that the indole derivatives have the aromatic ring placed in the same relative position during the interaction with the receptor.