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1.
Microb Genom ; 8(10)2022 10.
Article in English | MEDLINE | ID: mdl-36239595

ABSTRACT

The ability to respond to injury is essential for the survival of an organism and involves analogous mechanisms in animals and plants. Such mechanisms integrate coordinated genetic and metabolic reprogramming events requiring regulation by small RNAs for adequate healing of the wounded area. We have previously reported that the response to injury of the filamentous fungus Trichoderma atroviride involves molecular mechanisms closely resembling those of plants and animals that lead to the formation of new hyphae (regeneration) and the development of asexual reproduction structures (conidiophores). However, the involvement of microRNAs in this process has not been investigated in fungi. In this work, we explore the participation of microRNA-like RNAs (milRNAs) molecules by sequencing messenger and small RNAs during the injury response of the WT strain and RNAi mutants. We found that Dcr2 appears to play an important role in hyphal regeneration and is required to produce the majority of sRNAs in T. atroviride. We also determined that the three main milRNAs produced via Dcr2 are induced during the damage-triggered developmental process. Importantly, elimination of a single milRNA phenocopied the main defects observed in the dcr2 mutant. Our results demonstrate the essential role of milRNAs in hyphal regeneration and asexual development by post-transcriptionally regulating cellular signalling processes involving phosphorylation events. These observations allow us to conclude that fungi, like plants and animals, in response to damage activate fine-tuning regulatory mechanisms.


Subject(s)
Hypocreales , MicroRNAs , Animals , Gene Expression Regulation, Fungal , Hyphae/genetics , Hypocreales/genetics , Hypocreales/metabolism , MicroRNAs/genetics , MicroRNAs/metabolism , Regeneration/genetics
2.
Exp Biol Med (Maywood) ; 243(13): 1027-1036, 2018 09.
Article in English | MEDLINE | ID: mdl-30322266

ABSTRACT

IMPACT STATEMENT: This is the first study in which hsa-miR-708-5p has been identified in peripheral blood monocytes (osteoclast precursors) and associated with postmenopausal osteoporosis through small RNA-Sequencing, in an Admixed Mexican Mestizo population. By conducting in silico and bioinformatic analyzes, we identified target genes and important signaling pathways involved in bone metabolism pointing hsa-miR-708-5p as a candidate marker for osteoporosis in Mexican population. These approaches provide a landscape of the post-transcriptional regulation, which can be useful for the management of postmenopausal osteoporosis along with the potential use of microRNAs as markers for its early detection.


Subject(s)
Gene Expression Regulation , MicroRNAs/genetics , Osteoclasts/cytology , Osteoporosis, Postmenopausal/genetics , Computational Biology , Gene Expression Profiling/methods , Humans , Mexican Americans , Monocytes/metabolism , Sequence Analysis, RNA/methods
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