Generation of HIV-1 and Internal Control Transcripts as Standards for an In-House Quantitative Competitive RT-PCR Assay to Determine HIV-1 Viral Load.

Human immunodeficiency virus type-1 (HIV-1) viral load is useful for monitoring disease progression in HIV-infected individuals. We generated RNA standards of HIV-1 and internal control (IC) by in vitro transcription and evaluated its performance in a quantitative reverse transcription polymerase chain reaction (qRT-PCR) assay. HIV-1 and IC standards were obtained at high RNA concentrations, without DNA contamination. When these transcripts were included as standards in a qRT-PCR assay, it was obtained a good accuracy (±0.5 log(10) unit of the expected results) in the quantification of the HIV-1 RNA international standard and controls. The lower limit detection achieved using these standards was 511.0 IU/mL. A high correlation (r = 0.925) was obtained between the in-house qRT-PCR assay and the NucliSens easyQ HIV-1 test (bioMerieux) for HIV-1 RNA quantitation with clinical samples (N = 14). HIV-1 and IC RNA transcripts, generated in this study, proved to be useful as standards in an in-house qRT-PCR assay for determination of HIV-1 viral load.

Long-term conservation of HCV RNA at 4 degrees C using a new RNA stabilizing solution.

Protecting RNA from degradation, whilst maintaining its biological activity, is essential in molecular biology. However, RNA is very sensitive to degradation by ribonucleases, especially at temperatures above 0 degrees C. The stability of RNA was examined at 4 degrees C and -20 degrees C, in a new stabilizing solution consisting of a low-molarity mixture of chaotropic agents guanidinium and ammonium thiocyanate, a buffer for pH stabilization, phenol, and yeast RNA. Two substrates were tested for storage: RNA in human plasma positive for hepatitis C virus (HCV) and naked RNA (purified from HCV positive human plasma or transcribed in vitro). Stability was followed by viral load estimation, using an in-house competitive RT-PCR assay. Naked RNA purified from human plasma positive for HCV was stable at 4 degrees C for at least 24 months. An RNA standard transcribed in vitro was still viable after 36 months of storage at 4 degrees C. Human plasma dilutions positive for HCV were stable for at least 5 months in this solution when stored at 4 degrees C. It was concluded that the described stabilizing solution ensures long-term stability on naked RNA at 4 degrees C, and ideal for the storage of RNA controls and standards for molecular diagnosis, the solution may be used for preserving clinical samples prior to transport to a clinical laboratory.

Scaling up in vitro transcription synthesis of RNA standards for competitive quantitative RT-PCR: looking for bigger yields.

Because the acquisition of in vitro transcription kits, for production of RNA standards, might not be affordable for some small laboratories, the current work describes some alternatives to the commercial Promega protocols. Yields of tested reactions were all higher than the ones reported for the standard Riboprobe kit (1mug RNA/mug template, 1x) and the optimized variant for high yields (5-10x). They were also as good as the ones described for the high RNA production kit RiboMAX (10-20x), exceeding them in approximately 70% of reactions. Our best results, achieved in a 500-mul format, were three to five times higher than the ones reported for the Promega kit.

The usefulness of Umelosa hepatitis C vírus qualitative kit as supplemental test for confirmation of hepatitis C virus infection.

Forty voluntary blood donors from two different blood banks in Havana, Cuba, who were repeatedly reactive on the routine screening of antibodies to hepatitis C virus, by Umelisa HCV test, were analyzed for the presence of HCV RNA using a nested PCR assay of the HCV 5' untranslated region, Umelosa HCV qualitative. Sera from 45 patients of a specialized gastroenterology consultation, positive to Umelisa HCV, were also assayed with the Umelosa HCV qualitative, to establish their condition related to the presence of HCV RNA previously to the indication of a treatment or after three, six or twelve months of antiviral therapy. Serum HCV-RNA was detected in 21/40 (52.5%) donors who had repeatedly positive ELISA results, confirming the HCV infection for them. In specialized consultation HCV-RNA was detected by PCR analysis in 30/45 (66%) analyzed sera.

The usefulness of Umelosa hepatitis C vírus qualitative kit as supplemental test for confirmation of hepatitis C virus infection

Quarenta doadores de sangue voluntários de dois bancos de sangue em Havana, Cuba, repetidamente reativos ao exame de rotina para anticorpos contra o vírus da hepatite C, pelo teste Umelisa HCV, foram analisados para a presença de RNA HCV através de um ensaio de PCR da regiäo 5' näo-traduzida do HCV denominado Umelosa HCV qualitativo. Amostras de soro obtidas de 45 pacientes atendidos em consulta gastroenterológica especializada, positivos para Umelisa HCV, também foram avaliados através do Umelosa HCV qualitativo, para estabelecer sua condiçäo em relaçäo à presença de RNA HCV previamente à indicaçäo de um tratamento ou após três, seis ou doze meses de terapia anti-viral. O RNA HCV sérico foi detectado em 21/40 (52,5 por cento) doadores que haviam apresentado resultados ELISA positivos repetidos, confirmando a infecçäo por HCV. Nos pacientes atendidos em consulta especializada, o RNA HCV foi detectado por análise de PCR em 30/45 (66 por cento) amostras de soro analisadas.

Validation of a nested PCR assay UMELOSA HCV CUALITATIVO for the detection of Hepatitis C virus.

An analysis of the performance characteristics of the UMELOSA HCV CUALITATIVO assay for the detection of Hepatitis C virus (HCV) RNA in human serum or plasma is presented. This qualitative in vitro diagnostic test is performed in three steps: (a) extraction of viral RNA, (b) reverse transcription of target RNA to generate complementary DNA followed by a polymerase chain reaction assay coupled with a second round of amplification, and finally (c) fluorescent detection of the amplified DNA by hybridization in a solid phase of an ultramicroplate coated with a complementary to amplified DNA probe. Considering the assay as a limit test for the control of impurities, the following analytical performance parameters were evaluated: specificity, detection limit and robustness. A comparative evaluation of the clinical performance and detection limit of our kit and the commercial AMPLICOR HCV test, version 2.0, was also included in the validation protocol. The assay had a good specificity and did not cross-react with the non-HCV analyzed positive samples. The 95% detection limit was of 101.7IU/ml with 95% confidence interval from 81.0 to 162.8IU/ml. The UMELOSA HCV CUALITATIVO meets the minimal sensitivity requirements for a single unit blood testing of 5000 and 1250IU/ml, defined by the Paul-Ehrlich-Institute in Germany and the Food and Drug Administration in USA, respectively. Compared with the commercial AMPLICOR, the test gave identical results for all analyzed positive and negative samples. In robustness studies there was no cross-contamination between negative samples and these same samples spiked with 10000IU/ml of HCV-RNA.