ABSTRACT
A novel member of the genus Amycolatopsis was isolated from soil collected from the banks of the Umgeni River, KwaZulu Natal province, South Africa. The strain, designated UM16(T), grouped with the type strains of Amycolatopsis alba, Amycolatopsis coloradensis and Amycolatopsis thailandensis by 16S rRNA gene based phylogeny. Genetic distance values, based on the gyrB and recN genes, between strain UM16(T) and its closest relatives were all above the threshold values of 0.02 and 0.04, respectively, that have been proposed to distinguish Amycolatopsis type strains. DNA-DNA hybridisation experiments confirmed that strain UM16(T) represents a unique genomic species, sharing 18.4 ± 5.1, 16.2 ± 1.8 and 45.8 ± 8.9 % DNA relatedness to the type strains of A. alba, A. coloradensis and A. thailandensis, respectively. The physiological, phylogenetic and DNA-relatedness data support the description of strain UM16(T) as the type strain of a novel species, for which the name Amycolatopsis umgeniensis sp. nov. is proposed (= DSM 45272(T) = NRRL B-24724(T)).
Subject(s)
Actinomycetales/classification , Actinomycetales/isolation & purification , Soil Microbiology , Actinomycetales/genetics , Actinomycetales/physiology , Bacterial Proteins/genetics , Bacterial Typing Techniques , Cluster Analysis , DNA Gyrase/genetics , DNA Restriction Enzymes/genetics , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Molecular Sequence Data , Nucleic Acid Hybridization , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , South AfricaABSTRACT
An actinomycete, strain BS2T, was isolated from a sand sample collected from an estuary in Plettenberg Bay, Western Cape Province, South Africa. Based on 16S rRNA gene sequence similarities and chemotaxonomy, strain BS2T was identified as a member of the genus Gordonia. It exhibited weak antibiosis against Mycobacterium aurum A+ and Mycobacterium smegmatis LR222. Phenotypic and phylogenetic results allowed for the differentiation of strain BS2T from other species within the genus Gordonia. DNA-DNA hybridization further differentiated strain BS2T from its nearest phylogenetic neighbour, Gordonia terrae NRRL B-16283T (57.5+/-4.4% DNA relatedness). Strain BS2T is therefore a novel species within the genus Gordonia, for which the name Gordonia lacunae is proposed, with the type strain being BS2T (=DSM 45085T=NRRL B-24551T).
Subject(s)
Actinomycetales/classification , Actinomycetales/isolation & purification , Soil Microbiology , Actinomycetales/chemistry , Actinomycetales/genetics , Antibiosis , Bacterial Typing Techniques , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Genes, rRNA , Molecular Sequence Data , Mycobacterium/drug effects , Mycobacterium/growth & development , Nucleic Acid Hybridization , Phylogeny , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Silicon Dioxide , South AfricaABSTRACT
An actinomycete with blue aerial mycelium and yellow substrate mycelium was isolated from a suburban soil sample collected in Cape Town, South Africa and named strain CPJVR-HT. The colour of the substrate mycelium was not sensitive to changes in pH. The organism produced spiny spores in Spirales spore chains. Chemical taxonomy indicated that it is a member of the genus Streptomyces. Strain CPJVR-HT grew at 45 degrees C and did not produce melanin or any diffusible pigments. It exhibited weak antibacterial activity against a clinical isolate of Enterococcus faecium, but no antibacterial activity against Escherichia coli ATCC 25922 or Pseudomonas aeruginosa ATCC 27853. Analysis of its 16S rRNA gene sequence, DNA-DNA hybridization studies and the results of physiological tests showed that this strain represents a novel species of Streptomyces, for which the name Corynebacterium aurimucosum [corrected] nov. is proposed. The type strain is CPJVR-HT (= NRRL B-24243T [corrected] = DSM 41829T).
