Unraveling radiation resistance strategies in two bacterial strains from the high background radiation area of Chavara-Neendakara: A comprehensive whole genome analysis.

This paper reports the results of gamma irradiation experiments and whole genome sequencing (WGS) performed on vegetative cells of two radiation resistant bacterial strains, Metabacillus halosaccharovorans (VITHBRA001) and Bacillus paralicheniformis (VITHBRA024) (D10 values 2.32 kGy and 1.42 kGy, respectively), inhabiting the top-ranking high background radiation area (HBRA) of Chavara-Neendakara placer deposit (Kerala, India). The present investigation has been carried out in the context that information on strategies of bacteria having mid-range resistance for gamma radiation is inadequate. WGS, annotation, COG and KEGG analyses and manual curation of genes helped us address the possible pathways involved in the major domains of radiation resistance, involving recombination repair, base excision repair, nucleotide excision repair and mismatch repair, and the antioxidant genes, which the candidate could activate to survive under ionizing radiation. Additionally, with the help of these data, we could compare the candidate strains with that of the extremely radiation resistant model bacterium Deinococccus radiodurans, so as to find the commonalities existing in their strategies of resistance on the one hand, and also the rationale behind the difference in D10, on the other. Genomic analysis of VITHBRA001 and VITHBRA024 has further helped us ascertain the difference in capability of radiation resistance between the two strains. Significantly, the genes such as uvsE (NER), frnE (protein protection), ppk1 and ppx (non-enzymatic metabolite production) and those for carotenoid biosynthesis, are endogenous to VITHBRA001, but absent in VITHBRA024, which could explain the former's better radiation resistance. Further, this is the first-time study performed on any bacterial population inhabiting an HBRA. This study also brings forward the two species whose radiation resistance has not been reported thus far, and add to the knowledge on radiation resistant capabilities of the phylum Firmicutes which are abundantly observed in extreme environment.

Mothocya renardi (Bleeker, 1857) (Crustacea: Isopoda: Cymothoidae) parasitising Strongylura leiura (Bleeker) (Belonidae) off the Malabar coast of India: Redescription, occurrence and life-cycle.

Mothocya renardi (Bleeker, 1857), a protandrically hermaphroditic cymothoid, parasitising the banded needle fish Strongylura leiura (Bleeker) from the Malabar Coast, India is redescribed and morphological data for different life-cycle stages [male, transitional and ovigerous female, larvae (pre-manca and manca) and juvenile] are provided. Mothocya renardi exhibited strict oligoxenous host specificity by infesting only S. leiura and showed high prevalence levels (reaching up to 92%). The life-cycle of M. renardi comprises three major phases (marsupial phase, free living phase and infestive phase). The marsupial phase comprised one zygotic, three embryonic and two larval stages, all of which remained in the marsupium until the final staged manca is released into the surrounding water. After having led a short free- swimming life, the manca infested the branchial cavity of the host fish, S. leiura. Subsequently it was transformed successively into juvenile, male, transitional and finally functional female through biphasic moult which occurs in between each stage. Based on the presence (or absence) of a brood pouch and/or marsupiumites, six successive stages of the female population were also identified. These data will help precise identification of the female M. renardi irrespective of their stage. The present paper also discusses the host-parasite interactions between S. leiura and M. renardi.

Cymothoa frontalis, a cymothoid isopod parasitizing the belonid fish Strongylura strongylura from the Malabar Coast (Kerala, India): redescription, description, prevalence and life cycle.

BACKGROUND: Cymothoa frontalis Milne Edward, 1840 is a very poorly described cymothoid, notwithstanding the previous redescription of the female. Pertinently, to date, the host of C. frontalis has not been identified with adequate precision. Most of the descriptions of cymothoids carried out hitherto were based primarily on females, but practically ignoring other life cycle stages. The present paper redescribes the female and describes other life cycle stages of the species C.frontalis toget better precision in their identification. RESULTS: The female phase of C. frontalis is redescribed according to type specimens extant in the NMNH, Paris, and also by the data obtained from live specimens collected during the present study. The general morphology and appendages of various life cycle stages of the species are described. Among 80 fish species from 35 families examined, C.frontalis wasrecovered only from Strongylurastrongylura signifyingits oligoxenous host specificity, the prevalence and intensity being 68.65% and 1.9, respectively. Each host fish in more than 85% of the population was infested with a pair of C. frontalis, in three combinations, predominantly with male-female pair (70.9%). C. frontalis exhibitedstrict site specificity attaching to the buccal cavity of the host fish. The study has also identified three major phases (marsupial, free living and infective) in the life cycle of C. frontalis. The zygotic-staged marsupiumites were developed through five sequential ontogenetic stages. The manca released from the marsupium become infective aftera brief period of free swimming life. During the infective phase, C.frontalis completesremaining life cycle stages with successive moulting. Further, six successive stages of the ovigerous females have also been identified. CONCLUSIONS: Thepresent redescription of the female and the description of transitional, male, juvenile and larvae of C. frontalis facilitate precise identification of the species at any stage of the life cycle. Further, the strict host and site specificitiesof the parasite, as borne out from the present study, and its high degree of prevalence in the host make C. frontalis as an ideal model organism to study the strategies to be adopted for the management of parasites infesting edible fishes.

A novel intramolecular homoenolate annulation leading to the formation of cyclopentene-fused macrocycles.

A nucleophilic heterocyclic carbene-mediated intramolecular homoenolate reaction strategy for the efficient synthesis of cyclopentene-fused macrocycles is reported.

5-Hydroxytryptamine (serotonin) 2A receptor gene polymorphism is associated with schizophrenia.

BACKGROUND & OBJECTIVES: Schizophrenia, the debilitating neuropsychiatric disorder, is known to be heritable, involving complex genetic mechanisms. Several chromosomal regions associated with schizophrenia have been identified during the past; putative gene (s) in question, to be called the global signature for the pathophysiology of the disease, however, seems to evade us. The results obtained from the several population-wise association-non association studies have been diverse. w0 e therefore, undertook the present study on Tamil speaking population in south India to examine the association between the single nucleotide polymorphisms (SNPs) at the serotonin receptor gene (5HT2A) and the occurrence of the disease. METHODS: Blood samples collected from 266 cases and 272 controls were subjected to genotyping (PCR amplification of candidate SNPs, RFLP and sequencing). The data on the SNPs were subjected to statistical analysis for assessing the gene frequencies in both the cases and the controls. RESULTS: The study revealed significant association between the genotypic frequencies of the serotonin receptor polymorphism and schizophrenia. SNP analysis revealed that the frequencies of GG (30%, rs6311) and CC genotypes (32%, rs6313), were higher in patients (P<0.05) than in controls. The study also showed presence of G and C alleles in patients. s0 ignificant levels of linkage disequilibrium (LD) were found to exist between the genotype frequencies of rs6311 and rs6313. INTERPRETATION & CONCLUSIONS: This study indicated an association between the SNPs (rs6311 and rs6313) of the serotonin receptor 5HT2A and schizophrenia. HapMap analysis revealed that in its genotype distribution, the Tamil speaking population was different from several other populations across the world, signifying the importance of such ethnicity-based studies to improve our understanding of this complex disease.

Radionuclides and radiation indices of high background radiation area in Chavara-Neendakara placer deposits (Kerala, India).

The present paper describes a detailed study on the distribution of radionuclides along Chavara - Neendakara placer deposit, a high background radiation area (HBRA) along the Southwest coast of India (Kerala). Judged from our studies using HPGe gamma spectrometric detector, it becomes evident that Uranium ((238)U), Thorium ((232)Th) and Potassium ((40)K) are the major sources for radioactivity prevailing in the area. Our statistical analyses reveal the existence of a high positive correlation between (238)U and (232)Th, implicating that the levels of these elements are interdependent. Our SEM-EDAX analyses reveal that titanium (Ti) and zircon (Zr) are the major trace elements in the sand samples, followed by aluminum, copper, iron, ruthenium, magnesium, calcium, sulphur and lead. This is first of its kind report on the radiation hazard indices on this placer deposit. The average absorbed dose rates (9795 nGy h(-1)) computed from the present study is comparable with the top-ranking HBRAs in the world, thus offering the Chavara-Neendakara placer the second position, after Brazil; pertinently, this value is much higher than the World average. The perceptibly high absorbed gamma dose rates, entrained with the high annual external effective dose rates (AEED) and average annual gonadal dose equivalent (AGDE) values existing in this HBRA, encourage us to suggest for a candid assessment of the impact of the background radiation, if any, on the organisms that inhabit along this placer deposit. Future research could effectively address the issue of the possible impact of natural radiation on the biota inhabiting this HBRA.

Application of polymerase chain reaction to detect burkholderia pseudomallei and Brucella species in buffy coat from patients with febrile illness among rural and peri-urban population.

CONTEXT: Melioidosis and Brucellosis are important endemic infections among people in India, especially in rural settings. Conventional detection techniques have several limitations. Only a few studies exist on the prevalence of Melioidosis and Brucellosis in rural area especially in India. AIM: We sought to evaluate detection of Burkholderia pseudomallei and Brucella spp. among patients presenting febrile illness. MATERIAL AND METHODS: Previously described polymerase chain reaction (PCR) assays for both pathogens were evaluated with Deoxyribonucleic acid extracts of buffy coat samples collected from 301 patients recruited prospectively. Data was not amenable to statistical analysis. RESULTS: The PCR showed specific amplification and no non-specific amplification with heterologous Gram-negative bacilli. The lower limit of detection of the assay for B. pseudomallei was determined to be 1 colony-forming unit /mL and for Brucella it was 1.95 × 10(3) plasmids per microliter. Blood culture in automated blood culture system was negative for all the samples. This prospective study carried out in southern India for the first time. PCR for Brucella was positive in 1% of the patient samples whereas 0.3% was positive for B. pseudomallei. CONCLUSION: The finding of Brucella and Burkholderia infections in our populations leads us to suggest that tests for Brucella and B. pseudomallei should also form part of a diagnostic platform for patients with Pyrexia of unknown origin in tropical developing countries.

Synthesis and characterization of new iridium photosensitizers for catalytic hydrogen generation from water.

Novel phenylazole ligands were applied successfully in the synthesis of cyclometalated iridium(III) complexes of the general formula [Ir(phenylazole)(2)(bpy)]PF(6) (bpy=2,2'-bipyridine). All complexes were fully characterized by NMR, IR, and MS spectroscopic studies as well as by cyclic voltammetry. Three crystal structures obtained by X-ray analysis complemented the spectroscopic investigations. The excited-state lifetimes of the iridium complexes were determined and showed to be in the range of several hundred ns to multiple µs. All obtained iridium complexes were active as photosensitizers in catalytic hydrogen evolution from water in the presence of triethylamine as a sacrificial reducing agent. Applying an in situ formed iron-based water reduction catalyst derived from [HNEt(3)](+) [HFe(3)(CO)(11)](-) and tris[3,5-tris-(trifluoromethyl)-phenyl]phosphine as the ligand, [Ir(2-phenylbenz-oxazole)(2)-(bpy)]PF(6) proved to be the most efficient complex giving a quantum yield of 16% at 440 nm light irradiation.