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1.
Acta Crystallogr F Struct Biol Commun ; 71(Pt 10): 1258-63, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26457516

ABSTRACT

The enzyme 2,4'-dihydroxyacetophenone dioxygenase (DAD) catalyses the conversion of 2,4'-dihydroxyacetophenone to 4-hydroxybenzoic acid and formic acid. This enzyme is a very unusual dioxygenase in that it cleaves a C-C bond in a substituent of the aromatic ring rather than within the ring itself. Whilst it has been shown that DAD is a tetramer in solution, the recently solved crystal structure of the Alcaligenes sp. 4HAP enzyme was in fact dimeric rather than tetrameric. Since the use of limited chymotrypsinolysis, which apparently results in removal of the first 20 or so N-terminal residues of DAD, was necessary for crystallization of the protein, it was investigated whether this was responsible for the change in its oligomerization state. Gel-filtration and analytical ultracentrifugation studies were conducted, which confirmed that chymotrypsinolysed DAD has an apparent molecular weight of around 40 kDa, corresponding to a dimer. In contrast, the native enzyme has a molecular weight in the 70-80 kDa region, as expected for the tetramer. The structural basis for tetramerization has been investigated by the use of several docking servers, and the results are remarkably consistent with the tetrameric structure of a homologous cupin protein from Ralstonia eutropha (PDB entry 3ebr).


Subject(s)
Alcaligenes/enzymology , Dioxygenases/chemistry , Protein Multimerization , Biocatalysis , Chromatography, Gel , Crystallization , Crystallography, X-Ray , Models, Molecular , Protein Structure, Quaternary , Static Electricity , Ultracentrifugation
8.
Biochem J ; 277 ( Pt 3): 767-71, 1991 Aug 01.
Article in English | MEDLINE | ID: mdl-1651701

ABSTRACT

1. Rat hepatocytes suspended in 0.25 M-sucrose were electropermeabilized. This completely disrupted their plasma-membrane permeability barrier. 2. The endoplasmic reticulum in electroporated hepatocytes appeared morphologically preserved and maintained its permeability barrier as evidenced by electron-microscopic examination and latency measurements on luminal reticular enzymes. 3. Upon aerobic incubation with an NADPH-generating system and iron/ADP, porated hepatocytes peroxidized their membrane lipids at rates similar to those of matched microsomal preparations. 4. When hepatocytes were incubated with iron/EDTA and azide, radical formation detectable with dimethyl sulphoxide (DMSO) was only 10-20% that shown by microsomes. Omitting azide abolished hepatocyte reactivity with DMSO completely. Effects of hydroxyl-radical (.OH) scavengers and of added catalase suggest that the radical detected by DMSO is .OH. 5. Cytosolic inhibitor(s) from hepatocytes seemed to be a major factor limiting .OH formation. These were macromolecular, but showed a degree of heat-stability. Dialysis largely abolished inhibition, but this could be restored again by adding GSH. 6. Since .OH formation in hepatocytes seems to be much more stringently prevented than lipid peroxidation, free-radical damage originating from intracellular redox systems seems more likely to take the form of lipid peroxidation.


Subject(s)
Hydroxides/chemistry , Lipid Peroxides/metabolism , Liver/metabolism , Microsomes, Liver/metabolism , Animals , Cell Membrane Permeability , Cytosol/metabolism , Electricity , Endoplasmic Reticulum/enzymology , Free Radicals , Glucose-6-Phosphatase/metabolism , Glucuronosyltransferase/metabolism , Hydroxides/metabolism , Male , Rats , Rats, Inbred Strains
10.
Free Radic Res Commun ; 7(3-6): 307-13, 1989.
Article in English | MEDLINE | ID: mdl-2583549

ABSTRACT

We have investigated the effects of iron overload in vivo on the tocopherol levels and the extent of lipid peroxidation in rat liver microsomes and their response to subsequent oxidative stress in vitro. The results demonstrate a direct correlation between consumption of antioxidant defences and the induction and extent of malondialdehyde production in microsomes prepared from iron-loaded rats. The data are consistent with the requirement for iron (II)/iron (III) ratios in lipid peroxidation in control microsomes.


Subject(s)
Antioxidants/metabolism , Iron/poisoning , Lipid Peroxidation/drug effects , Animals , Lipid Peroxidation/physiology , Male , Malondialdehyde/metabolism , Microsomes, Liver/drug effects , Microsomes, Liver/metabolism , Models, Chemical , Rats , Rats, Inbred Strains , Vitamin E/metabolism
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