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Database (Oxford) ; 20242024 Mar 09.
Article in English | MEDLINE | ID: mdl-38459946

ABSTRACT

Mapping of expression quantitative trait loci (eQTLs) and other molecular QTLs can help characterize the modes of action of disease-associated genetic variants. However, current eQTL databases present data from bulk RNA-seq approaches, which cannot shed light on the cell type- and environment-specific regulation of disease-associated genetic variants. Here, we introduce our Single-cell eQTL Interactive Database which collects single-cell eQTL (sc-eQTL) datasets and provides online visualization of sc-eQTLs across different cell types in a user-friendly manner. Although sc-eQTL mapping is still in its early stage, our database curates the most comprehensive summary statistics of sc-eQTLs published to date. sc-eQTL studies have revolutionized our understanding of gene regulation in specific cellular contexts, and we anticipate that our database will further accelerate the research of functional genomics. Database URL: http://www.sqraolab.com/scqtl.


Subject(s)
Gene Expression Regulation , Quantitative Trait Loci , Humans , Quantitative Trait Loci/genetics , RNA-Seq , Genomics , Genome-Wide Association Study , Polymorphism, Single Nucleotide
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