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1.
Phys Rev E ; 93(6): 062227, 2016 06.
Article in English | MEDLINE | ID: mdl-27415273

ABSTRACT

Shape transformations in driven and damped molecular chains are considered. Closed chains of weakly coupled molecular subunits under the action of spatially homogeneous time-periodic external field are studied. The coupling between the internal excitations and the bending degrees of freedom of the chain modifies the local bending rigidity of the chain. In the absence of driving the array takes a circular shape. When the energy pumped into the system exceeds some critical value the chain undergoes a nonequilibrium phase transition: The circular shape of the aggregate becomes unstable and the chain takes the shape of an ellipse or, in general, of a polygon. The excitation energy distribution becomes spatially nonuniform: It localizes in such places where the chain is more flat. The weak interaction of the chain with a flat surface restricts the dynamics to a flat manifold.

2.
Vox Sang ; 110(4): 369-75, 2016 May.
Article in English | MEDLINE | ID: mdl-26830874

ABSTRACT

BACKGROUND AND OBJECTIVES: The management of platelet concentrate (PC) stocks is not simple given their short shelf life and variable demand. In general, managers decide on PC production based on personal experience. The objective of this study was to provide a tool to help decide how many PC units to produce each day in a more rational and objective way. MATERIALS AND METHODS: From the historical data on PCs produced, transfused and discarded in the Basque Country in 2012, a mathematical model was built, based on the normality of the time series of the transfusions performed on each day of the week throughout the year. This model was implemented in an easy-to-use Excel spreadsheet and validated using real production data from 2013. RESULTS: Comparing with real 2013 data, in the best scenario, the number of PC units that expired was 87·7% lower, PC production, 14·3% lower and the age of the PCs transfused nearly 1-day younger in the simulation. If we want to ensure a minimum stock at the end of each day, the outdating rate and average age of the transfused PCs progressively increase. CONCLUSION: The practical application of the designed tool can facilitate decision-making about how many PC units to produce each day, resulting in very significant reductions in PC production and wastage and corresponding cost savings, together with an almost 1 day decrease in the mean age of PCs transfused.


Subject(s)
Blood Platelets/cytology , Blood Preservation/methods , Models, Theoretical , Humans , Spain , Time Factors
3.
Article in English | MEDLINE | ID: mdl-24229222

ABSTRACT

The possibility of controlling traffic dynamics by applying high-frequency time modulation of traffic flow parameters is studied. It is shown that the region of the car density where the uniform (free) flow is unstable changes in the presence of time modulation compared with the unmodulated case. This region shrinks when the speed-up of cars does not exceed some critical value and expands in the opposite case. The flux of the time-modulated flow is an increasing function of the amplitude of the modulation for traffic flows whose density is larger than 1/h where h is the safety distance in the nonmodulated case, while it is a decreasing function in the opposite case. In other words, the safety distance time modulation facilitates car propagation in the case when the mean distance between cars in the congestive traffic is less than h and hinders it when the neighboring cars in the flow are well separated. A link between a microscopic description and the macroscopic fundamental diagram is established.

4.
J Biol Phys ; 35(1): 103-13, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19669572

ABSTRACT

The role of thermal fluctuations in the conformational dynamics of a single closed filament is studied. It is shown that, due to the interaction between charges and bending degrees of freedom, initially circular chains may undergo transformation to polygonal shape.

5.
Phys Rev E Stat Nonlin Soft Matter Phys ; 78(5 Pt 1): 051908, 2008 Nov.
Article in English | MEDLINE | ID: mdl-19113156

ABSTRACT

The role of thermal fluctuations in the conformational dynamics of a single closed filament is studied. It is shown that, due to the interaction between charges and bending degrees of freedom, initially circular aggregates may undergo transformation to a polygonal shape. The transition occurs in the cases of hardening and softening charge-bending interaction. In the former case the charge and curvature are smoothly distributed along the chain, while in the latter spontaneous kink formation is initiated. The transition to a noncircular conformation is analogous to a phase transition of the second kind.


Subject(s)
DNA, Circular/chemistry , DNA/chemistry , Nucleic Acid Conformation , Deoxyribonucleotides/chemistry , Elasticity , Stochastic Processes , Temperature , Thermodynamics
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