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1.
Cell ; 186(23): 5054-5067.e16, 2023 11 09.
Article in English | MEDLINE | ID: mdl-37949058

ABSTRACT

Fatty acids (FAs) play a central metabolic role in living cells as constituents of membranes, cellular energy reserves, and second messenger precursors. A 2.6 MDa FA synthase (FAS), where the enzymatic reactions and structures are known, is responsible for FA biosynthesis in yeast. Essential in the yeast FAS catalytic cycle is the acyl carrier protein (ACP) that actively shuttles substrates, biosynthetic intermediates, and products from one active site to another. We resolve the S. cerevisiae FAS structure at 1.9 Å, elucidating cofactors and water networks involved in their recognition. Structural snapshots of ACP domains bound to various enzymatic domains allow the reconstruction of a full yeast FA biosynthesis cycle. The structural information suggests that each FAS functional unit could accommodate exogenous proteins to incorporate various enzymatic activities, and we show proof-of-concept experiments where ectopic proteins are used to modulate FAS product profiles.


Subject(s)
Acyl Carrier Protein , Fatty Acids , Saccharomyces cerevisiae , Acyl Carrier Protein/chemistry , Catalytic Domain , Fatty Acids/biosynthesis , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism
2.
Subcell Biochem ; 99: 1-33, 2022.
Article in English | MEDLINE | ID: mdl-36151372

ABSTRACT

Fatty acid (FA) biosynthesis plays a central role in the metabolism of living cells as building blocks of biological membranes, energy reserves of the cell, and precursors to second messenger molecules. In keeping with its central metabolic role, FA biosynthesis impacts several cellular functions and its misfunction is linked to disease, such as cancer, obesity, and non-alcoholic fatty liver disease. Cellular FA biosynthesis is conducted by fatty acid synthases (FAS). All FAS enzymes catalyze similar biosynthetic reactions, but the functional architectures adopted by these cellular catalysts can differ substantially. This variability in FAS structure amongst various organisms and the essential role played by FA biosynthetic pathways makes this metabolic route a valuable target for the development of antibiotics. Beyond cellular FA biosynthesis, the quest for renewable energy sources has piqued interest in FA biosynthetic pathway engineering to generate biofuels and fatty acid derived chemicals. For these applications, based on FA biosynthetic pathways, to succeed, detailed metabolic, functional and structural insights into FAS are required, along with an intimate knowledge into the regulation of FAS. In this review, we summarize our present knowledge about the functional, structural, and regulatory aspects of FAS.


Subject(s)
Biofuels , Fatty Acid Synthases , Anti-Bacterial Agents , Biosynthetic Pathways , Fatty Acid Synthases/genetics , Fatty Acid Synthases/metabolism , Fatty Acids/metabolism
3.
Appl Opt ; 61(31): 9233-9240, 2022 Nov 01.
Article in English | MEDLINE | ID: mdl-36607058

ABSTRACT

This paper presents the design and implementation of a scalable laser ranger finder (LRF)-based prototype system, which enables distance measurement and precise localization of multiple unmanned aerial vehicles (UAVs) in real-time. The system consists of a telescope and camera as the image acquisition components, supplemented by an LRF and a fast steering mirror (FSM) to obtain the distance measurement. By combining the optical path of the camera and the LRF through a dichroic mirror, the LRF is accurately aligned by the FSM based on the angular position of a UAV within the camera field of view. The implemented prototype successfully demonstrates distance measurements of up to four UAVs with a bandwidth of 14 Hz per object.

4.
Fortschr Neurol Psychiatr ; 89(1-02): 44-47, 2021 Jan.
Article in German | MEDLINE | ID: mdl-33051863

ABSTRACT

The implementation of ECT treatment should not be ruled out in principle even if there is a cavernoma of the medulla oblongata with previous bleeding, but it requires appropriate conditions such as neurosurgical consultation, strict blood pressure monitoring and special information from the patient.


Subject(s)
Electroconvulsive Therapy , Female , Humans , Medulla Oblongata
5.
Cell ; 180(6): 1130-1143.e20, 2020 03 19.
Article in English | MEDLINE | ID: mdl-32160528

ABSTRACT

Fatty acid synthases (FASs) are central to metabolism but are also of biotechnological interest for the production of fine chemicals and biofuels from renewable resources. During fatty acid synthesis, the growing fatty acid chain is thought to be shuttled by the dynamic acyl carrier protein domain to several enzyme active sites. Here, we report the discovery of a γ subunit of the 2.6 megadalton α6-ß6S. cerevisiae FAS, which is shown by high-resolution structures to stabilize a rotated FAS conformation and rearrange ACP domains from equatorial to axial positions. The γ subunit spans the length of the FAS inner cavity, impeding reductase activities of FAS, regulating NADPH turnover by kinetic hysteresis at the ketoreductase, and suppressing off-pathway reactions at the enoylreductase. The γ subunit delineates the functional compartment within FAS. As a scaffold, it may be exploited to incorporate natural and designed enzymatic activities that are not present in natural FAS.


Subject(s)
Fatty Acid Synthases/chemistry , Fatty Acid Synthases/metabolism , Acyl Carrier Protein/chemistry , Acyl Carrier Protein/metabolism , Acyltransferases/metabolism , Binding Sites , Catalytic Domain , Cryoelectron Microscopy/methods , Crystallography, X-Ray/methods , Fatty Acids/biosynthesis , Fatty Acids/chemistry , Models, Molecular , Protein Subunits/chemistry , Protein Subunits/isolation & purification , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Structure-Activity Relationship
6.
Cell ; 172(3): 454-464.e11, 2018 01 25.
Article in English | MEDLINE | ID: mdl-29361316

ABSTRACT

The spliceosome is a highly dynamic macromolecular complex that precisely excises introns from pre-mRNA. Here we report the cryo-EM 3D structure of the human Bact spliceosome at 3.4 Å resolution. In the Bact state, the spliceosome is activated but not catalytically primed, so that it is functionally blocked prior to the first catalytic step of splicing. The spliceosomal core is similar to the yeast Bact spliceosome; important differences include the presence of the RNA helicase aquarius and peptidyl prolyl isomerases. To examine the overall dynamic behavior of the purified spliceosome, we developed a principal component analysis-based approach. Calculating the energy landscape revealed eight major conformational states, which we refined to higher resolution. Conformational differences of the highly flexible structural components between these eight states reveal how spliceosomal components contribute to the assembly of the spliceosome, allowing it to generate a dynamic interaction network required for its subsequent catalytic activation.


Subject(s)
Molecular Dynamics Simulation , Spliceosomes/chemistry , HeLa Cells , Humans , Spliceosomes/metabolism , Spliceosomes/ultrastructure
7.
Pediatr Res ; 76(2): 142-9, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24850312

ABSTRACT

BACKGROUND: Neonates show sustained inflammation after a bacterial infection, which is associated with inflammatory diseases like bronchopulmonary dysplasia or periventricular leucomalacia. Physiologically, inflammation is terminated early after the removal of the invading pathogens by phagocytosis-induced cell death (PICD) of immune effector cells. Earlier results showed reduced PICD in neonatal monocytes. The underlying molecular mechanisms are unknown. We hypothesize that the reduced PICD in neonatal monocytes is regulated through the proteins of the B-cell lymphoma 2 (Bcl-2) protein family. METHODS: mRNA and protein expression of Bcl-2 family proteins in cord blood and adult peripheral blood monocytes infected with Escherichia coli were analyzed by quantitative real-time PCR and flow cytometry and cytochrome c release by fluorescence microscopy. RESULTS: mRNA expression of antiapopototic Bcl-xL was upregulated in cord blood monocytes (CBMO), whereas proapoptotic Bim tended to be higher in peripheral blood monocytes (PBMO). Upon infection, Bax was more strongly expressed in PBMO compared with CBMO. The pro/antiapoptotic balance was skewed toward survival in CBMO and apoptosis in PBMO. Cytochome c release into the cytosol was enhanced in PBMO compared with CBMO. CONCLUSION: Bcl-2 proteins are involved in reduced PICD in neonatal monocytes. These findings are another step toward the understanding of sustained inflammation in neonates.


Subject(s)
Apoptosis/immunology , Escherichia coli Infections/immunology , Monocytes/immunology , Phagocytosis/immunology , Proto-Oncogene Proteins c-bcl-2/immunology , Adult , Analysis of Variance , Cytochromes c/metabolism , DNA Primers/genetics , Female , Flow Cytometry , Humans , Infant, Newborn , Microscopy, Fluorescence , Monocytes/metabolism , Proto-Oncogene Proteins c-bcl-2/metabolism , Real-Time Polymerase Chain Reaction
8.
Am J Vet Res ; 66(12): 2073-80, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16379649

ABSTRACT

OBJECTIVE: To compare expression of tartrate-resistant acid phosphatase (TRAP) and cathepsin K and histologic changes in canine cranial cruciate ligaments (CCLs) and human anterior cruciate ligaments (ACLs). STUDY POPULATION: Sections of cruciate ligaments from 15 dogs with ruptured CCLs, 8 aged dogs with intact CCLs, 14 human beings with ruptured ACLs, and 11 aged human beings with intact ACLs. PROCEDURE: The CCLs and ACLs were evaluated histologically, and cells containing TRAP and cathepsin K were identified histochemically and immunohistochemically, respectively. RESULTS: The proportion of ruptured CCLs that contained TRAP+ cells was significantly higher than the proportion of intact ACLs that did but similar to proportions of intact CCLs and ruptured ACLs that did. The proportion of ruptured CCLs that contained cathepsin K+ cells was significantly increased, compared with all other groups. Numbers of TRAP+ and cathepsin K+ cells were significantly increased in ruptured CCLs, compared with intact ACLs. The presence of TRAP+ cells was correlated with inflammatory changes, which were most prominent in ruptured CCLs. CONCLUSION AND CLINICAL RELEVANCE: Results suggest that synovial macrophage-like cells that produce TRAP are an important feature of the inflammation associated with CCL rupture in dogs. Identification of TRAP and cathepsin K in intact CCLs and ACLs from aged dogs suggests that these enzymes have a functional role in cruciate ligament remodeling and repair. We hypothesize that recruitment and activation of TRAP+ macrophage-like cells into the stifle joint synovium and CCL epiligament are critical features of the inflammatory arthritis that promotes progressive degradation and eventual rupture of the CCL in dogs.


Subject(s)
Acid Phosphatase/metabolism , Anterior Cruciate Ligament Injuries , Anterior Cruciate Ligament/metabolism , Cathepsins/metabolism , Isoenzymes/metabolism , Macrophages/metabolism , Synovial Membrane/cytology , Analysis of Variance , Animals , Anterior Cruciate Ligament/pathology , Cathepsin K , Dogs/injuries , Humans , Immunohistochemistry/veterinary , Synovial Membrane/metabolism , Tartrate-Resistant Acid Phosphatase
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