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1.
Bioorg Khim ; 17(6): 725-31, 1991 Jun.
Article in Russian | MEDLINE | ID: mdl-1723267

ABSTRACT

We suggest a simple approach to localization of antigenic determinants for the monoclonal antibody 13B1 raised against recombinant human interleukin-2. The approach is based on the limited trypsin proteolysis, peptide separation by the O'Farrell method and identification of the peptides, interacting with monoclonal antibodies, and comparison of the charge and length of these peptides with the corresponding values of theoretically possible peptides.


Subject(s)
Antibodies, Monoclonal , Epitopes/immunology , Interleukin-2/immunology , Amino Acid Sequence , Electrophoresis, Polyacrylamide Gel , Humans , Isoelectric Focusing , Molecular Sequence Data , Recombinant Proteins/immunology , Trypsin/chemistry
5.
Bioorg Khim ; 15(10): 1362-5, 1989 Oct.
Article in Russian | MEDLINE | ID: mdl-2631685

ABSTRACT

We have cloned human interleukin-2 gene and sequenced its 1'-flanking region (-1940 to -936). The region contains promoter-like structures having a high degree of homology with the real promoter.


Subject(s)
Interleukin-2/genetics , Base Sequence , Cloning, Molecular , Humans , Molecular Sequence Data , Promoter Regions, Genetic , Protein Conformation , Restriction Mapping
6.
Mol Biol (Mosk) ; 23(4): 983-7, 1989.
Article in Russian | MEDLINE | ID: mdl-2586511

ABSTRACT

Several nucleoside 5'-triphosphate analogs were investigated as inhibitors of human hepatitis B virus replication. Different analogs inhibited DNA synthesis differently, 3'-azido-2',3'-dideoxythymidine 5'triphosphate being the most active compound. This inhibitor blocked DNA synthesis by 50% at inhibitor: substrate molar ratio 1:8, and by 80% - at 1:1. The hypothesis is formulated that 3'-azido-2',3'-dideoxythymidine 5'-triphosphate inhibits RNA directed viral DNA replication due to incorporation of this compound into 3'-termini of newly synthesized DNA chains. The phenomenon observed opens new possibilities for chemotherapy of acute and chronic human hepatitis B.


Subject(s)
Antiviral Agents , Hepatitis B virus/physiology , Virus Replication/drug effects , Zidovudine/pharmacology , DNA Replication/drug effects , DNA, Viral/drug effects , Electrophoresis, Agar Gel , Humans
8.
Bioorg Khim ; 12(4): 482-9, 1986 Apr.
Article in Russian | MEDLINE | ID: mdl-3718548

ABSTRACT

Preparative RNA-ligase synthesis of decaribonucleotides, the 5'-and 3'-constituent parts to be used for the synthesis of 20-base polyribonucleotides] simulating minimal translation initiation regions for phage RNA was carried out. The decamers were obtained via appropriate heptamers also by RNA-ligase catalyzed synthesis. Apart from decamers used to prepare the functionally active 20-base polyribonucleotide, the minimal translation initiation region of the replicase gene (R) in MS2 and fr phage--sequence R(-17----3) and two its variants, decanucleotides for other template modification were also synthesized. Three 5'-terminal decamers were isolated and identified including the natural decamer ApApApCpApUpGpApGpG (-17----(-)8) and those with G(-9)----A(-9) and U(-12)----C(-12) nucleotide substitutions, as well as three 3'-terminal products differing from the natural region ApUpUpCpCpCpApUpG (-7----3) in MS2 RNA by U(-6)----A(-6), U(-6)U(-5)----A(-6)A(-5) and CCC----UUU (-3----(-)1) substitutions.


Subject(s)
Oligoribonucleotides/biosynthesis , Polynucleotide Ligases , Protein Biosynthesis , RNA Ligase (ATP) , RNA, Messenger/biosynthesis , Base Sequence , Coliphages/genetics , Peptide Chain Initiation, Translational , RNA, Messenger/genetics , RNA, Viral/biosynthesis , Templates, Genetic
9.
Mol Biol (Mosk) ; 19(4): 1079-85, 1985.
Article in Russian | MEDLINE | ID: mdl-2413345

ABSTRACT

2',3'-O-(4-[N-(2-chloroethyl)-N-methylamino]) benzylidene derivative of AUGU6 was used for identification of the proteins in the region of the mRNA-binding centre of E. coli ribosomes. This derivative alkylated ribosomes (preferentially 30S ribosomal) with high efficiency within the 70S initiation complex. In both 30S and 50S ribosomal subunits proteins and rRNA were modified. Specificity of the alkylation of ribosomal proteins and rRNA with the reagent was proved by the inhibitory action of AUGU6. Using the method of two-dimensional electrophoresis in polyacrylamide gel the proteins S4, S12, S13, S14, S15, S18, S19 and S20/L26 which are labelled by the analog of mRNA were identified.


Subject(s)
Benzylidene Compounds/pharmacology , Escherichia coli/metabolism , Oligoribonucleotides/pharmacology , Peptide Chain Initiation, Translational , RNA, Bacterial/metabolism , RNA, Messenger/metabolism , Ribosomes/metabolism , Alkylation , Benzylidene Compounds/metabolism , Binding Sites , Electrophoresis, Polyacrylamide Gel , Oligoribonucleotides/metabolism , Ribosomal Proteins/metabolism , Time Factors
10.
Bioorg Khim ; 9(11): 1535-43, 1983 Nov.
Article in Russian | MEDLINE | ID: mdl-6385995

ABSTRACT

Hexaribouridylic acid, prepared by digestion of poly(U) with cobra venom endonuclease, and trinucleotide AUG synthesized chemically by triester approach were joined by RNA-ligase to yield a nonaribonucleotide AUGU6 bearing the initiation codon at its 5'-terminus. 2',3'-O-(4-[N-(2-chloro(or hydroxy) ethyl-N-Methylamino])- benzylidene residues were introduced at the 3'-terminus of oligonucleotide AUGU6 and its benzylidene derivatives AUGU6CHRCl or AUGU6CHROH were obtained. The mRNA analogs synthesized were tested for their template activity in the formation of 70S initiation complex. AUGU6, AUGU6CHRC1 and AUGU6CHROH were shown to stimulate factor-dependent binding of fMet-tRNA to ribosomes. The effect of benzylidene fragment on the template activity of AUGU6CHROH in the course of translation process was studied. It was shown that AUGU6CHROH stimulates synthesis of di- and tripeptides with the same efficiency as AUGU6.


Subject(s)
Benzylidene Compounds/pharmacology , Oligonucleotides/metabolism , Oligoribonucleotides/metabolism , Protein Biosynthesis , RNA, Messenger/genetics , Ribosomes/metabolism , Codon , Escherichia coli/genetics , Escherichia coli/metabolism , Peptide Chain Initiation, Translational , RNA, Messenger/metabolism , RNA, Ribosomal/genetics , RNA, Ribosomal/metabolism , RNA, Transfer, Amino Acyl/genetics , RNA, Transfer, Amino Acyl/metabolism , Templates, Genetic
11.
Mol Biol (Mosk) ; 15(5): 1158-68, 1981.
Article in Russian | MEDLINE | ID: mdl-7029244

ABSTRACT

A series of plasmids with tetracycline resistance genes (Tcr-operon) subjected to transcription from chloramphenicol acetyl transferase promoter (Cmr-promoter) have been constructed on the basis of plasmid pBR325, AprCmrTcr. For this purpose, a 0.8 Md fragment in pBR325 DNA bordered by unique EcoRI and HindIII restriction sites was cut out and structural genes of Tcr-operon were fused to the cat gene nucleotides corresponding to Cmr-promoter and first 72 amino acids of cat (alton, Vapnek, 1979; Marcoli et al., 1980). These plasmids with molecular weight amounting to 3 Md confer AprTcr phenotype to host cells. Tetracycline resistance can be eliminated completely by the deletion of a) Cmr-promoter; b) part of the first Tcr-operon gene.


Subject(s)
Acetyltransferases/genetics , Escherichia coli/genetics , Genes, Bacterial , Plasmids , Tetracycline , Chloramphenicol O-Acetyltransferase , Drug Resistance, Microbial , Molecular Weight , Recombination, Genetic , Transcription, Genetic
12.
Biokhimiia ; 46(9): 1640-5, 1981 Sep.
Article in Russian | MEDLINE | ID: mdl-7028142

ABSTRACT

The level of contaminating RNAases in the main components of the protein biosynthesis initiation system, the initiation factors and ribosomes of E. coli, was studied. It was shown that the ribosomes are the major source of contaminating RNAases. A simple procedure for purification of ribosomes active in initiation including Sephadex G-200 gel-filtration of unwashed ribosomes in a 1.5 M NH4Cl-containing buffer was developed.


Subject(s)
Escherichia coli/metabolism , Peptide Chain Initiation, Translational , Ribonucleases/isolation & purification , Ribosomes/metabolism , Ribonucleases/metabolism
13.
Mol Biol (Mosk) ; 15(4): 725-52, 1981.
Article in Russian | MEDLINE | ID: mdl-7024782

ABSTRACT

Structural aspects of ribosomal recognition of initiation sites on messenger RNA in procaryotes are considered. Location of initiation sites on mRNA, their length, typical nucleotide sequences that build up the initiation signal, and also the influence of the macrostructure of mRNA on protein synthesis are discussed. Determined nucleotide sequences of mRNA and DNA flanking the origin of different phage and bacterial genes are given.


Subject(s)
Bacteria/genetics , Peptide Chain Initiation, Translational , RNA, Messenger/genetics , Base Sequence , Genes , Genes, Viral , RNA Phages/genetics
16.
Genetika ; 16(10): 1719-28, 1980.
Article in Russian | MEDLINE | ID: mdl-7007155

ABSTRACT

A number of ts-mutants with altered characteristics of RNA synthesis in non-suppressor cells at elevated temperatures have been obtained after HNO2-treatment of phage MS2am623 (amber mutation in site 50). The mutant ts130 is studied in detail: its peak of RNA synthesis is displaced 10 min. later and the total amount of RNA is reduced in 5-10 times. No RNA synthesis is observed in ts130-infected cell at 46 degrees C. Changes in the character of RNA synthesis are accompanied by the over-production of phage subunit of replicase: at 42 degrees C the replicase/RNA ratio in ts130 is 20 times higher than that of the original phage MS2am623. It is assumed that there is a decrease in the activity of replicase--RNA repressor complex in ts130 resulting in the loss of replicase control over its own synthesis while the control of coat protein synthesis remains unaffected.


Subject(s)
Coliphages/genetics , RNA Nucleotidyltransferases/genetics , RNA Phages/genetics , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/genetics , Repressor Proteins/analysis , Transcription Factors/analysis , Coliphages/enzymology , Escherichia coli/metabolism , Mutation , Protein Biosynthesis , RNA Phages/enzymology , RNA, Viral/biosynthesis , Temperature , Viral Proteins/biosynthesis
17.
Mol Biol (Mosk) ; 12(6): 1288-98, 1978.
Article in Russian | MEDLINE | ID: mdl-106237

ABSTRACT

Partial digestion with T1 RNAase and chemical modification with kethoxal were used to study stability of two hairpin in the proposed secondary structure of the functionally active MS2 RNA fragment MS2 R(--53 leads to 6), containing the regulatory region of the phage replicase cistron. Analysis of the products obtained after the above treatments showed that T1 RNAase and kethoxal attacked predominantly the guanosine residues in the hairpin b of the MS2 R(--53 leads to 6). This implies that in contrast to the structurally stable hairpin a of the polynucleotide, hairpin b appears to be more labile and may exist under the present experimental conditions in equilibrium with its open form. The data of the competition experiments demonstrated that the kethoxal modified MS2 R(-53 leads to 6) and shorter polynucleotide MS2 R(-53 leads to-11) obtained from MS2 R(-53 leads to 6) after T1 RNAase digestion failed to bind with MS2 coat protein. The relatively unstable hairpin b region in the polynucleotide MS2 R(-53 leads to 6) is suggested to play essential role in the complex formation.


Subject(s)
Aldehydes , Antiviral Agents , Coliphages/analysis , RNA Nucleotidyltransferases/metabolism , RNA, Viral , RNA-Dependent RNA Polymerase/metabolism , Ribonuclease T1 , Ribonucleases , Base Sequence , Butanones , Drug Stability , Guanosine/analysis , Nucleic Acid Conformation , Oligoribonucleotides/analysis
18.
Genetika ; 14(10): 1687-95, 1978 Oct.
Article in Russian | MEDLINE | ID: mdl-363501

ABSTRACT

The synthesis of RNA by polar coat protein mutants f2sus3 and Qbetaam12 under suppressor (Escherichia coli S26R1E, Su+-1; H12R8a Su+-3) and non-suppressor (E. coli AB259; S26) conditions was examined. It was demonstrated that the synthesis of viral RNA under non-suppressor conditions in the presence of rifamycin produced the same gaussian pattern of rates as the synthesis of RNA by wild type phage or non-polar coat protein mutants. However, the total amount of RNA was decreased approximately 10-fold and the peak of RNA synthesis was displaced 7--10 min later. The number of infective centers was reduced also 10-fold indicating that a certain time-lapse was required to overcome the polarity of the parental RNA, this process being of single occurrence, exclusively on the parental RNA, but not on the progeny strains. As a consequence, it was concluded that the initiation of translation at the replicase cistron starts on the nascent RNA chains within the replicative complexes and not on the fully-synthesized templates with their complete secondary structure. The data obtained are not in contradiction with the hypothesis concerning the role of the repressor complex II (replicase-RNA) to slow down the synthesis of replicase and RNA in the coat protein mutants. The polarity can not be responsible probably for the blocking of the replicase cistron on the nascent chain following the block of coat protein cistron. Therefore, it appears appropriate to assume the existence of two binding sites for the replicase as repressor which is in keeping with the conclusions of Weissmann and co-workers.


Subject(s)
Coliphages/metabolism , RNA, Viral/biosynthesis , Viral Proteins/genetics , Coliphages/genetics , Escherichia coli/genetics , Escherichia coli/metabolism , RNA-Dependent RNA Polymerase/genetics , RNA-Dependent RNA Polymerase/metabolism
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